FvH4_6g10380

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006413
Physical Location & Seq
Forward (+)
6192074 .. 6193544
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10380.t1

Sequence Viewer

Length: 642 bp
ATGTCCTTTTCTGTGCCAATGCCTTCGGCTGGACCAAGCGCTGCACCCCTCTCGACCGCTATAACTGTGGTTAGCTCACAGTTCCTGGCATCCTACCCTGTGAATCTGTACATTTCCGAGAAGCTGGTGACCATTAAGGAAGGTGCCTTCACAGTCACCGATGTTGATGGCAAAGACATGTTCACTGTCGAAGGTTCTTTTTTCAGCCTTCATGATACTCGACGATTGCTCGACAGTTCTGGTACTCCTATCCTCACCTTCCGTCAAAAGATTACTACGGTACATAGGAGATGGCAAGTATATAGAGGAGATAGCTCGAACAGCAAAGATCTACTTTTCAGTGCCAAGAAGTCGGGGCTTGTCCAATTTAAGACTGAACTTGATGTGTTCTTGGCTACAAACACAAAAGAAGACCATCATGATTTCAAGGTCAAAGGAAGCTTTAGAGAAAAATCATGCACCATATACTCCAAAGACAACACTATCCTTGGACAAATGCATAAGGACTGCGGTGTTAAAAACAGTATTTTAGGAAAGGATGTGTTTGCAGTGACTGTGTACCCTCAAGTCGATTTCGCCTTCATAGTTGCTGTTGTGGTGGTTCTTCATGAGATTAACCAGGACCGAAAAGGAGAAGACTGA

Protein Analysis

214

Amino Acids

23.67

Weight (kDa)

7.78

Isoelectric Point (pI)

34.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 34 - 202 1.1e-46 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 143
AciI CCGC 2 cut(s) 57, 510
AfaI GTAC 4 cut(s) 110, 244, 282, 560
AfeI AGCGCT 1 cut(s) 40
AfiI CCNNNNNNNGG 1 cut(s) 29
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 1 cut(s) 427
AjnI CCWGG 2 cut(s) 84, 618
AluBI AGCT 4 cut(s) 75, 124, 315, 441
AluI AGCT 4 cut(s) 75, 124, 315, 441
AlwNI CAGNNNCTG 2 cut(s) 85, 554
Aor51HI AGCGCT 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 2 cut(s) 32, 622
AsuHPI GGTGA 3 cut(s) 139, 148, 247
AvaII GGWCC 2 cut(s) 32, 622
BanI GGYRCC 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 417
BbvI GCAGC 1 cut(s) 28
BccI CCATC 3 cut(s) 161, 285, 423
BcgI CGANNNNNNTGC 2 cut(s) 33, 67
BciT130I CCWGG 2 cut(s) 86, 620
BfoI RGCGCY 1 cut(s) 42
BglII AGATCT 1 cut(s) 328
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 2 cut(s) 86, 620
Bme18I GGWCC 2 cut(s) 32, 622
BmgT120I GGNCC 2 cut(s) 32, 622
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 2 cut(s) 86, 620
BmsI GCATC 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 417
BpuEI CTTGAG 1 cut(s) 549
BsaJI CCNNGG 1 cut(s) 487
Bsc4I CCNNNNNNNGG 1 cut(s) 29
BseBI CCWGG 2 cut(s) 86, 620
BseDI CCNNGG 1 cut(s) 487
BseGI GGATG 2 cut(s) 89, 544
BseLI CCNNNNNNNGG 1 cut(s) 29
BseRI GAGGAG 1 cut(s) 321
BseXI GCAGC 1 cut(s) 28
BsgI GTGCAG 1 cut(s) 27
Bsh1285I CGRYCG 1 cut(s) 57
BshNI GGYRCC 1 cut(s) 143
BsiEI CGRYCG 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 29
Bsp1407I TGTACA 1 cut(s) 108
Bsp143I GATC 1 cut(s) 328
BspACI CCGC 2 cut(s) 57, 510
BspHI TCATGA 3 cut(s) 211, 418, 607
BspLI GGNNCC 1 cut(s) 145
BspT107I GGYRCC 1 cut(s) 143
BsrGI TGTACA 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 487
BssMI GATC 1 cut(s) 328
BssT1I CCWWGG 1 cut(s) 487
Bst2UI CCWGG 2 cut(s) 86, 620
Bst4CI ACNGT 8 cut(s) 67, 81, 154, 187, 236, 280, 524, 556
BstAUI TGTACA 1 cut(s) 108
BstEII GGTNACC 1 cut(s) 127
BstF5I GGATG 2 cut(s) 89, 544
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 1 cut(s) 331
BstMBI GATC 1 cut(s) 328
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 321
BstNI CCWGG 2 cut(s) 86, 620
BstNSI RCATGY 1 cut(s) 181
BstPI GGTNACC 1 cut(s) 127
BstSCI CCNGG 2 cut(s) 84, 618
BstV1I GCAGC 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BtsCI GGATG 2 cut(s) 89, 544
BtsI GCAGTG 1 cut(s) 555
BtsIMutI CAGTG 3 cut(s) 183, 346, 555
CaiI CAGNNNCTG 2 cut(s) 85, 554
CciI TCATGA 3 cut(s) 211, 418, 607
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 2 cut(s) 32, 622
Csp6I GTAC 4 cut(s) 109, 243, 281, 559
CviAII CATG 5 cut(s) 178, 212, 419, 456, 608
CviJI RGCY 8 cut(s) 29, 75, 124, 207, 315, 358, 395, 441
CviKI_1 RGCY 8 cut(s) 29, 75, 124, 207, 315, 358, 395, 441
CviQI GTAC 4 cut(s) 109, 243, 281, 559
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 487
Eco47I GGWCC 2 cut(s) 32, 622
Eco47III AGCGCT 1 cut(s) 40
Eco91I GGTNACC 1 cut(s) 127
EcoO65I GGTNACC 1 cut(s) 127
EcoRII CCWGG 2 cut(s) 84, 618
EcoT14I CCWWGG 1 cut(s) 487
EcoT22I ATGCAT 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 487
FaeI CATG 5 cut(s) 181, 215, 422, 459, 611
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FatI CATG 5 cut(s) 177, 211, 418, 455, 607
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 2 cut(s) 76, 551
Fsp4HI GCNGC 1 cut(s) 42
GlaI GCGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 42
HhaI GCGC 1 cut(s) 41
Hin1II CATG 5 cut(s) 181, 215, 422, 459, 611
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HindIII AAGCTT 1 cut(s) 439
HinfI GANTC 1 cut(s) 103
HphI GGTGA 3 cut(s) 139, 148, 247
Hpy166II GTNNAC 2 cut(s) 183, 559
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 4 cut(s) 52, 212, 419, 608
Hpy8I GTNNAC 2 cut(s) 183, 559
Hpy99I CGWCG 1 cut(s) 225
HpyAV CCTTC 7 cut(s) 33, 134, 157, 185, 218, 268, 589
HpyCH4III ACNGT 8 cut(s) 67, 81, 154, 187, 236, 280, 524, 556
HpyCH4V TGCA 4 cut(s) 44, 459, 499, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 321
Hsp92II CATG 5 cut(s) 181, 215, 422, 459, 611
HspAI GCGC 1 cut(s) 39
Kzo9I GATC 1 cut(s) 328
LpnPI CCDG 8 cut(s) 15, 71, 98, 110, 111, 225, 605, 632
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 1 cut(s) 98
MaeIII GTNAC 3 cut(s) 127, 154, 550
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MboII GAAGA 2 cut(s) 422, 596
MflI RGATCY 1 cut(s) 328
MluCI AATT 1 cut(s) 365
MnlI CCTC 4 cut(s) 59, 263, 299, 573
Mph1103I ATGCAT 1 cut(s) 501
MseI TTAA 4 cut(s) 135, 369, 516, 615
MspR9I CCNGG 2 cut(s) 86, 620
MvaI CCWGG 2 cut(s) 86, 620
MwoI GCNNNNNNNGC 1 cut(s) 321
NdeII GATC 1 cut(s) 328
NlaIII CATG 5 cut(s) 181, 215, 422, 459, 611
NlaIV GGNNCC 1 cut(s) 145
NmuCI GTSAC 3 cut(s) 127, 154, 550
NsiI ATGCAT 1 cut(s) 501
NspI RCATGY 1 cut(s) 181
PagI TCATGA 3 cut(s) 211, 418, 607
PciI ACATGT 1 cut(s) 177
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 43
PscI ACATGT 1 cut(s) 177
Psp6I CCWGG 2 cut(s) 84, 618
PspEI GGTNACC 1 cut(s) 127
PspGI CCWGG 2 cut(s) 84, 618
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 2 cut(s) 32, 622
PstNI CAGNNNCTG 2 cut(s) 85, 554
PsuI RGATCY 1 cut(s) 328
RsaI GTAC 4 cut(s) 110, 244, 282, 560
RsaNI GTAC 4 cut(s) 109, 243, 281, 559
SaqAI TTAA 4 cut(s) 135, 369, 516, 615
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 328
Sau96I GGNCC 2 cut(s) 32, 622
ScrFI CCNGG 2 cut(s) 86, 620
SetI ASST 8 cut(s) 77, 126, 145, 196, 260, 317, 432, 443
SfaNI GCATC 1 cut(s) 98
SinI GGWCC 2 cut(s) 32, 622
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
Sse9I AATT 1 cut(s) 365
SsiI CCGC 2 cut(s) 57, 510
StyD4I CCNGG 2 cut(s) 84, 618
StyI CCWWGG 1 cut(s) 487
TaaI ACNGT 8 cut(s) 67, 81, 154, 187, 236, 280, 524, 556
TaqI TCGA 6 cut(s) 53, 189, 220, 231, 317, 570
TaqII GACCGA 1 cut(s) 639
TasI AATT 1 cut(s) 365
TatI WGTACW 1 cut(s) 108
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 4 cut(s) 135, 369, 516, 615
Tru9I TTAA 4 cut(s) 135, 369, 516, 615
TscAI CASTG 3 cut(s) 190, 346, 555
TseFI GTSAC 3 cut(s) 127, 154, 550
TseI GCWGC 1 cut(s) 41
Tsp45I GTSAC 3 cut(s) 127, 154, 550
TspDTI ATGAA 3 cut(s) 200, 571, 596
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 3 cut(s) 190, 346, 555
VpaK11BI GGWCC 2 cut(s) 32, 622
XceI RCATGY 1 cut(s) 181
Zsp2I ATGCAT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.