Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006413

Physical Location & Seq

Genomic Coordinates Forward (+)

19527874 .. 19529270

Gene Structure 1397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g17190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTCTTATGCTGTACCGGTGCCGGCGGCAGGGCCTAGCGCACAGCCACTGGCGAACCCAGTGACGGTGGTGAGCCCGCAGTTCCTCGCGGCGTATCCGGTGGACCTGGTGATCACGGAGAAGATGATGACCATCAAGGAGGGTGCGTTTACTGTGTCCGATGTCAACGGCAACCTCATGTTCAACATCAAAGGCTCACTTTTCAGCCTTCACGACCGCCGCGTGTTGGTGGACAACGCCGGTAATCCAATCGTCTCTTTCCGACAAAAGATAATGACGGCTCATAGGAGATGGCAAGTATATAGAGGAGAGAGCTCAGACTCGAAAGATCTACTTTTCAGTGCCAAGAAGGCATCTCTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

122

Amino Acids

13.24

Weight (kDa)

9.63

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006413)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10370 FvH4_6g10371 FvH4_6g10380
malus_domestica	MD12G1183000.v1.1 MD12G1183400.v1.1
prunus_persica	Prupe.6G287600_v2.0.a1 Prupe.6G287800_v2.0.a1
pyrus_communis	pycom12g17190
rosa_chinensis	RchiOBHm_Chr3g0461221 RchiOBHm_Chr3g0461231
rosa_laevigata	RLG00000024945 RLG00000024946
rosa_multiflora	Rmu_sc0009344.1_g000010 Rmu_ssc0000326.1_g000014
rosa_roxburghii	Rroxscaffold_6G00418780 Rroxscaffold_6G00418800
rosa_rugosa	Rorug03G0049000 Rorug03G0049100
rosa_samantha	Rh3AG106300 Rh3AG106400 Rh3BG110500 Rh3BG110600 Rh3CG112200 Rh3CG112300 Rh3DG112400
rosa_wichuraiana	Rw3G009100 Rw3G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AccII	CGCG	2 cut(s)	89, 222
AciI	CCGC	5 cut(s)	26, 77, 89, 217, 220
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	3 cut(s)	29, 64, 226
AgeI	ACCGGT	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	1 cut(s)	315
AluI	AGCT	1 cut(s)	315
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	259
AlwNI	CAGNNNCTG	1 cut(s)	49
AoxI	GGCC	1 cut(s)	32
AsiGI	ACCGGT	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	32, 103
AsuHPI	GGTGA	2 cut(s)	82, 121
AvaII	GGWCC	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	2 cut(s)	77, 317
Bbv12I	GWGCWC	1 cut(s)	317
BccI	CCATC	2 cut(s)	140, 285
BceAI	ACGGC	2 cut(s)	184, 294
BciT130I	CCWGG	1 cut(s)	107
BciVI	GTATCC	1 cut(s)	105
BclI	TGATCA	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	1 cut(s)	36
BfuI	GTATCC	1 cut(s)	105
BglI	GCCNNNNNGGC	1 cut(s)	350
BglII	AGATCT	1 cut(s)	328
BisI	GCNGC	3 cut(s)	27, 90, 220
BlsI	GCNGC	3 cut(s)	28, 91, 221
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	32, 103
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	107
BmrI	ACTGGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	362
BmuI	ACTGGG	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	131
BsaWI	WCCGGW	2 cut(s)	16, 97
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 64, 226
Bse118I	RCCGGY	3 cut(s)	16, 22, 239
Bse1I	ACTGG	2 cut(s)	54, 59
Bse8I	GATNNNNATC	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	107
BseJI	GATNNNNATC	1 cut(s)	131
BseLI	CCNNNNNNNGG	3 cut(s)	29, 64, 226
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	2 cut(s)	54, 59
BseRI	GAGGAG	1 cut(s)	321
Bsh1236I	CGCG	2 cut(s)	89, 222
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	1 cut(s)	34
BshNI	GGYRCC	1 cut(s)	19
BshTI	ACCGGT	1 cut(s)	16
BsiEI	CGRYCG	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	4 cut(s)	17, 23, 98, 240
BslI	CCNNNNNNNGG	3 cut(s)	29, 64, 226
BsmAI	GTCTC	1 cut(s)	259
BsmBI	CGTCTC	1 cut(s)	259
BsnI	GGCC	1 cut(s)	34
Bsp1286I	GDGCHC	2 cut(s)	77, 317
Bsp143I	GATC	2 cut(s)	111, 328
BspACI	CCGC	5 cut(s)	26, 77, 89, 217, 220
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	329
BspFNI	CGCG	2 cut(s)	89, 222
BspLI	GGNNCC	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	19
BsrFI	RCCGGY	3 cut(s)	16, 22, 239
BsrI	ACTGG	2 cut(s)	54, 59
BssAI	RCCGGY	3 cut(s)	16, 22, 239
BssMI	GATC	2 cut(s)	111, 328
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	2 cut(s)	67, 154
BstC8I	GCNNGC	2 cut(s)	24, 77
BstDEI	CTNAG	1 cut(s)	316
BstFNI	CGCG	2 cut(s)	89, 222
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	2 cut(s)	114, 331
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	2 cut(s)	111, 328
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	105
BstUI	CGCG	2 cut(s)	89, 222
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BsuI	GTATCC	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	34
BtsIMutI	CAGTG	3 cut(s)	47, 66, 346
Cac8I	GCNNGC	2 cut(s)	24, 77
CaiI	CAGNNNCTG	1 cut(s)	49
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	3 cut(s)	16, 22, 239
Cfr13I	GGNCC	2 cut(s)	32, 103
CsiI	ACCWGGT	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	14
CspAI	ACCGGT	1 cut(s)	16
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	7 cut(s)	34, 46, 75, 195, 207, 281, 315
CviKI_1	RGCY	7 cut(s)	34, 46, 75, 195, 207, 281, 315
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	1 cut(s)	316
DpnI	GATC	2 cut(s)	113, 330
DpnII	GATC	2 cut(s)	111, 328
Ecl136II	GAGCTC	1 cut(s)	315
Eco24I	GRGCYC	2 cut(s)	77, 317
Eco47I	GGWCC	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	315
EcoICRI	GAGCTC	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	105
EcoT38I	GRGCYC	2 cut(s)	77, 317
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	1 cut(s)	181
FaiI	YATR	5 cut(s)	9, 179, 285, 301, 303
FalI	AAGNNNNNCTT	4 cut(s)	183, 215, 318, 350
FatI	CATG	1 cut(s)	177
FauI	CCCGC	1 cut(s)	84
FbaI	TGATCA	1 cut(s)	111
Fnu4HI	GCNGC	3 cut(s)	27, 90, 220
FriOI	GRGCYC	2 cut(s)	77, 317
Fsp4HI	GCNGC	3 cut(s)	27, 90, 220
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	3 cut(s)	27, 90, 220
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	4 cut(s)	17, 23, 98, 240
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	181
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	4 cut(s)	17, 23, 98, 240
HphI	GGTGA	2 cut(s)	82, 121
Hpy166II	GTNNAC	4 cut(s)	103, 150, 166, 232
Hpy188I	TCNGA	3 cut(s)	160, 263, 319
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	4 cut(s)	103, 150, 166, 232
HpyAV	CCTTC	2 cut(s)	218, 343
HpyCH4III	ACNGT	2 cut(s)	67, 154
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	1 cut(s)	316
Hsp92II	CATG	1 cut(s)	181
HspAI	GCGC	1 cut(s)	39
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	111, 328
LpnPI	CCDG	9 cut(s)	15, 30, 35, 36, 72, 92, 111, 119, 253
LweI	GCATC	1 cut(s)	362
MabI	ACCWGGT	1 cut(s)	105
MaeI	CTAG	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	2 cut(s)	113, 330
MboI	GATC	2 cut(s)	111, 328
MboII	GAAGA	1 cut(s)	133
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	2 cut(s)	77, 317
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	4 cut(s)	95, 133, 185, 299
MroNI	GCCGGC	1 cut(s)	22
MspI	CCGG	4 cut(s)	17, 23, 98, 240
MspR9I	CCNGG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	107
MvnI	CGCG	2 cut(s)	89, 222
MwoI	GCNNNNNNNGC	1 cut(s)	350
NaeI	GCCGGC	1 cut(s)	24
NdeII	GATC	2 cut(s)	111, 328
NgoMIV	GCCGGC	1 cut(s)	22
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PdiI	GCCGGC	1 cut(s)	24
PinAI	ACCGGT	1 cut(s)	16
PkrI	GCNGC	3 cut(s)	28, 91, 221
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
Psp124BI	GAGCTC	1 cut(s)	317
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	2 cut(s)	32, 103
PstNI	CAGNNNCTG	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	328
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SacI	GAGCTC	1 cut(s)	317
SatI	GCNGC	3 cut(s)	27, 90, 220
Sau3AI	GATC	2 cut(s)	111, 328
Sau96I	GGNCC	2 cut(s)	32, 103
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	2 cut(s)	77, 317
SetI	ASST	3 cut(s)	108, 177, 317
SexAI	ACCWGGT	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	362
SinI	GGWCC	1 cut(s)	103
SsiI	CCGC	5 cut(s)	26, 77, 89, 217, 220
SspMI	CTAG	1 cut(s)	36
SstI	GAGCTC	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	67, 154
TaqI	TCGA	1 cut(s)	323
TauI	GCSGC	3 cut(s)	29, 92, 222
TscAI	CASTG	3 cut(s)	54, 66, 346
TseFI	GTSAC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	61
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	3 cut(s)	54, 66, 346
VpaK11BI	GGWCC	1 cut(s)	103
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.