Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006413

Physical Location & Seq

Genomic Coordinates Reverse (-)

40637507 .. 40643475

Gene Structure 5969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024945

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTCGTATGCTGTGCCGGTACCTGCGACTGGGCAGAGCGCTCAGCCTCTGGCCAACCCCATTACGGTGGTCAGCCCGCAGTTCCAAGCAACCTACCCTGTGGATCTGGTCATCACGGAGAAGATGATGACGATCAAGGAAGGTGATTTTACAGTGTCGGACGTTAATGGAAATGTCATGTTCCAGGTCAAAGGCTCCCTTTTCAGCCTTCATGATCGTCGGACTTTGGTCGACAGCGCCGGCACTCCTATCCTCTCCTTCCGACAAAAGATAATGACAGCACATAGGAGATGGCACGTATTTAGAGGAGAGAGCTCAGACGAAAAAGATCTACTCTTCACTGCCAGGAAGTCATCCTTTTTCCAGCTCAAGACTGAATTAGATGTGTTCTTGGCTGGTAACACTAAGGAAGAAGCTTACGATTTCAAGGTCAAAGGAAGCTGGGGGGAAAGATCATGCACCATATATAATGGAGACAACACTATCATTGCACAAATGCACAAGAAACATGATCTTAAAAGTAGTTTGTTTGGGAGAGATGCGTTTTCAGTGACTGTGTATCCTCATGTTGATTATGCCTTTATAACTGCCATTCTCAAAGTTCCTGGCATCAACCCTGTGGATCTGTACATTTCCGAGAAGCTGATCACTATTAAGGAAGGTGCCTTCACTGTCACCAATGTTGATGGCGAAGTCATTGTCACTGTAGAAGGTTCTTTATTCAGCCATCATGATACTCGACAATTGCTTGACAGCGCTGGTTCTCCTATCCTCACCTTCCGTCAGAAGATTATTTCAATACATAGGAGATGGGAAGTATATAGAGTAGATAGCTCGAGCAGCAAAGATCTACTTTTCAGTGCCAAGAAGTCAGGGCTAGTCCAATTTAAGACTGAACTAGATGTGTTCTTGGCTACTAACACAAAGGAAGACCAGCATGATTTCAAGGTCAAAGGAAGCTTTAGGGATAAAGCAAGCACCATATACTCTAAAGACAACACTATCATTGGACAAATGCATGAGGATGTCAGTATTAAAAACAGTATATTTGGAAAGGATGTGTTTTCAGTGACTGTGTACCCTCAAGTTGATGTCGCCTTCATAGTTGCTGTTGTGGTGATTCTTCATGAGATTAACCAGGACCGATCAGGAAAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

387

Amino Acids

43.28

Weight (kDa)

6.88

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	34 - 199	3.9e-51	LURP-one-related
LOR	PF04525	207 - 375	6.6e-44	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006413)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10370 FvH4_6g10371 FvH4_6g10380
malus_domestica	MD12G1183000.v1.1 MD12G1183400.v1.1
prunus_persica	Prupe.6G287600_v2.0.a1 Prupe.6G287800_v2.0.a1
pyrus_communis	pycom12g17190
rosa_chinensis	RchiOBHm_Chr3g0461221 RchiOBHm_Chr3g0461231
rosa_laevigata	RLG00000024945 RLG00000024946
rosa_multiflora	Rmu_sc0009344.1_g000010 Rmu_ssc0000326.1_g000014
rosa_roxburghii	Rroxscaffold_6G00418780 Rroxscaffold_6G00418800
rosa_rugosa	Rorug03G0049000 Rorug03G0049100
rosa_samantha	Rh3AG106300 Rh3AG106400 Rh3BG110500 Rh3BG110600 Rh3CG112200 Rh3CG112300 Rh3DG112400
rosa_wichuraiana	Rw3G009100 Rw3G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
Acc36I	ACCTGC	1 cut(s)	31
Acc65I	GGTACC	1 cut(s)	19
AccB1I	GGYRCC	2 cut(s)	19, 662
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	2 cut(s)	111, 630
AcoI	YGGCCR	1 cut(s)	51
AfaI	GTAC	3 cut(s)	21, 629, 1079
AfeI	AGCGCT	2 cut(s)	40, 757
AfiI	CCNNNNNNNGG	2 cut(s)	29, 64
AgsI	TTSAA	3 cut(s)	427, 798, 946
AjnI	CCWGG	4 cut(s)	183, 344, 604, 1137
AluBI	AGCT	7 cut(s)	315, 367, 416, 441, 643, 834, 960
AluI	AGCT	7 cut(s)	315, 367, 416, 441, 643, 834, 960
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	468
AlwI	GGATC	2 cut(s)	111, 630
AlwNI	CAGNNNCTG	3 cut(s)	49, 554, 1073
Ama87I	CYCGRG	1 cut(s)	835
Aor51HI	AGCGCT	2 cut(s)	40, 757
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	840
ArsI	GACNNNNNNTTYG	2 cut(s)	684, 716
Asp718I	GGTACC	1 cut(s)	19
AspLEI	GCGC	3 cut(s)	41, 239, 758
AspS9I	GGNCC	1 cut(s)	1141
AsuHPI	GGTGA	4 cut(s)	155, 667, 766, 1129
AvaI	CYCGRG	1 cut(s)	835
AvaII	GGWCC	1 cut(s)	1141
BalI	TGGCCA	1 cut(s)	53
BanI	GGYRCC	2 cut(s)	19, 662
BanII	GRGCYC	1 cut(s)	317
BbsI	GAAGAC	1 cut(s)	936
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	852
BccI	CCATC	4 cut(s)	285, 680, 735, 804
BciT130I	CCWGG	4 cut(s)	185, 346, 606, 1139
BciVI	GTATCC	1 cut(s)	570
BclI	TGATCA	1 cut(s)	645
BcoDI	GTCTC	1 cut(s)	468
BfaI	CTAG	2 cut(s)	878, 899
BfmI	CTRYAG	1 cut(s)	705
BfoI	RGCGCY	3 cut(s)	42, 240, 759
BfuAI	ACCTGC	1 cut(s)	31
BfuI	GTATCC	1 cut(s)	570
BglII	AGATCT	2 cut(s)	328, 847
BisI	GCNGC	1 cut(s)	841
BlpI	GCTNAGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	842
Bme1390I	CCNGG	4 cut(s)	185, 346, 606, 1139
Bme18I	GGWCC	1 cut(s)	1141
BmeT110I	CYCGRG	1 cut(s)	835
BmgT120I	GGNCC	1 cut(s)	1141
BmiI	GGNNCC	3 cut(s)	21, 196, 664
BmrFI	CCNGG	4 cut(s)	185, 346, 606, 1139
BmrI	ACTGGG	1 cut(s)	39
BmsI	GCATC	2 cut(s)	529, 618
BmuI	ACTGGG	1 cut(s)	39
BoxI	GACNNNNGTC	1 cut(s)	227
BpiI	GAAGAC	1 cut(s)	936
Bpu1102I	GCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	2 cut(s)	353, 1068
BsaAI	YACGTR	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 64
Bse118I	RCCGGY	2 cut(s)	16, 239
Bse1I	ACTGG	1 cut(s)	34
Bse3DI	GCAATG	1 cut(s)	486
Bse8I	GATNNNNATC	1 cut(s)	131
BseBI	CCWGG	4 cut(s)	185, 346, 606, 1139
BseGI	GGATG	3 cut(s)	353, 1030, 1063
BseJI	GATNNNNATC	1 cut(s)	131
BseLI	CCNNNNNNNGG	2 cut(s)	29, 64
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	2 cut(s)	56, 330
BseNI	ACTGG	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	852
BseYI	CCCAGC	1 cut(s)	441
BshFI	GGCC	1 cut(s)	53
BshNI	GGYRCC	2 cut(s)	19, 662
BsiHKAI	GWGCWC	1 cut(s)	317
BsiHKCI	CYCGRG	1 cut(s)	835
BsiSI	CCGG	2 cut(s)	17, 240
BslI	CCNNNNNNNGG	2 cut(s)	29, 64
BsmAI	GTCTC	1 cut(s)	468
BsnI	GGCC	1 cut(s)	53
BsoBI	CYCGRG	1 cut(s)	835
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp1407I	TGTACA	1 cut(s)	627
Bsp1720I	GCTNAGC	1 cut(s)	42
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	2 cut(s)	55, 329
BspHI	TCATGA	3 cut(s)	211, 730, 1126
BspLI	GGNNCC	3 cut(s)	21, 196, 664
BspMI	ACCTGC	1 cut(s)	31
BspPI	GGATC	2 cut(s)	111, 630
BspT107I	GGYRCC	2 cut(s)	19, 662
BsrDI	GCAATG	1 cut(s)	486
BsrFI	RCCGGY	2 cut(s)	16, 239
BsrGI	TGTACA	1 cut(s)	627
BsrI	ACTGG	1 cut(s)	34
BssAI	RCCGGY	2 cut(s)	16, 239
Bst2UI	CCWGG	4 cut(s)	185, 346, 606, 1139
Bst4CI	ACNGT	7 cut(s)	67, 154, 556, 673, 706, 1043, 1075
Bst6I	CTCTTC	1 cut(s)	341
BstAUI	TGTACA	1 cut(s)	627
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	3 cut(s)	77, 241, 976
BstDEI	CTNAG	3 cut(s)	42, 316, 405
BstF5I	GGATG	3 cut(s)	353, 1030, 1063
BstH2I	RGCGCY	3 cut(s)	42, 240, 759
BstHHI	GCGC	3 cut(s)	41, 239, 758
BstMAI	GTCTC	1 cut(s)	468
BstMWI	GCNNNNNNNGC	1 cut(s)	840
BstNI	CCWGG	4 cut(s)	185, 346, 606, 1139
BstPAI	GACNNNNGTC	1 cut(s)	227
BstSCI	CCNGG	4 cut(s)	183, 344, 604, 1137
BstSFI	CTRYAG	1 cut(s)	705
BstV1I	GCAGC	1 cut(s)	852
BstV2I	GAAGAC	1 cut(s)	936
BstX2I	RGATCY	4 cut(s)	103, 328, 622, 847
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	4 cut(s)	103, 328, 622, 847
BsuI	GTATCC	1 cut(s)	570
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	3 cut(s)	353, 1030, 1063
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	7 cut(s)	159, 339, 555, 669, 702, 865, 1074
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	3 cut(s)	77, 241, 976
CaiI	CAGNNNCTG	3 cut(s)	49, 554, 1073
CciI	TCATGA	3 cut(s)	211, 730, 1126
CfoI	GCGC	3 cut(s)	41, 239, 758
Cfr10I	RCCGGY	2 cut(s)	16, 239
Cfr13I	GGNCC	1 cut(s)	1141
Csp6I	GTAC	3 cut(s)	20, 628, 1078
CviAII	CATG	9 cut(s)	178, 212, 456, 509, 566, 731, 938, 1019, 1127
CviQI	GTAC	3 cut(s)	20, 628, 1078
DdeI	CTNAG	3 cut(s)	42, 316, 405
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
Ecl136II	GAGCTC	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	1141
Eco47III	AGCGCT	2 cut(s)	40, 757
Eco53kI	GAGCTC	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	835
EcoICRI	GAGCTC	1 cut(s)	315
EcoRII	CCWGG	4 cut(s)	183, 344, 604, 1137
EcoT22I	ATGCAT	1 cut(s)	1020
EcoT38I	GRGCYC	1 cut(s)	317
FaeI	CATG	9 cut(s)	181, 215, 459, 512, 569, 734, 941, 1022, 1130
FalI	AAGNNNNNCTT	6 cut(s)	183, 215, 341, 373, 837, 869
FatI	CATG	9 cut(s)	177, 211, 455, 508, 565, 730, 937, 1018, 1126
FauI	CCCGC	1 cut(s)	84
FbaI	TGATCA	1 cut(s)	645
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	841
FokI	GGATG	3 cut(s)	340, 1037, 1070
FriOI	GRGCYC	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	841
FspBI	CTAG	2 cut(s)	878, 899
GlaI	GCGC	3 cut(s)	40, 238, 757
GluI	GCNGC	1 cut(s)	841
GsaI	CCCAGC	1 cut(s)	445
HaeII	RGCGCY	3 cut(s)	42, 240, 759
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	2 cut(s)	17, 240
HhaI	GCGC	3 cut(s)	41, 239, 758
Hin1II	CATG	9 cut(s)	181, 215, 459, 512, 569, 734, 941, 1022, 1130
Hin6I	GCGC	3 cut(s)	39, 237, 756
HinP1I	GCGC	3 cut(s)	39, 237, 756
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HindIII	AAGCTT	2 cut(s)	414, 958
HinfI	GANTC	1 cut(s)	1120
HpaII	CCGG	2 cut(s)	17, 240
HphI	GGTGA	4 cut(s)	155, 667, 766, 1129
Hpy166II	GTNNAC	2 cut(s)	232, 1078
Hpy188I	TCNGA	6 cut(s)	160, 222, 263, 319, 637, 786
Hpy188III	TCNNGA	5 cut(s)	212, 370, 731, 1127, 1149
Hpy8I	GTNNAC	2 cut(s)	232, 1078
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	8 cut(s)	134, 218, 268, 653, 676, 704, 787, 1108
HpyCH4III	ACNGT	7 cut(s)	67, 154, 556, 673, 706, 1043, 1075
HpyCH4IV	ACGT	2 cut(s)	162, 297
HpyCH4V	TGCA	4 cut(s)	459, 491, 499, 1018
HpyF10VI	GCNNNNNNNGC	1 cut(s)	840
HpyF3I	CTNAG	3 cut(s)	42, 316, 405
HpySE526I	ACGT	2 cut(s)	162, 297
Hsp92II	CATG	9 cut(s)	181, 215, 459, 512, 569, 734, 941, 1022, 1130
HspAI	GCGC	3 cut(s)	39, 237, 756
KpnI	GGTACC	1 cut(s)	23
KroI	GCCGGC	1 cut(s)	239
KroNI	GCCGGC	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	645
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	1 cut(s)	852
LweI	GCATC	2 cut(s)	529, 618
MaeI	CTAG	2 cut(s)	878, 899
MaeII	ACGT	2 cut(s)	162, 297
MaeIII	GTNAC	5 cut(s)	398, 550, 673, 700, 1069
MboII	GAAGA	6 cut(s)	133, 328, 422, 799, 941, 1115
MfeI	CAATTG	1 cut(s)	743
MflI	RGATCY	4 cut(s)	103, 328, 622, 847
MhlI	GDGCHC	1 cut(s)	317
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	3 cut(s)	377, 743, 884
MluNI	TGGCCA	1 cut(s)	53
MmeI	TCCRAC	3 cut(s)	138, 200, 286
MnlI	CCTC	7 cut(s)	57, 263, 299, 573, 782, 1015, 1092
Mox20I	TGGCCA	1 cut(s)	53
Mph1103I	ATGCAT	1 cut(s)	1020
MroNI	GCCGGC	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	6 cut(s)	165, 516, 654, 888, 1035, 1134
MslI	CAYNNNNRTG	2 cut(s)	65, 1023
Msp20I	TGGCCA	1 cut(s)	53
MspI	CCGG	2 cut(s)	17, 240
MspR9I	CCNGG	4 cut(s)	185, 346, 606, 1139
MunI	CAATTG	1 cut(s)	743
MvaI	CCWGG	4 cut(s)	185, 346, 606, 1139
MwoI	GCNNNNNNNGC	1 cut(s)	840
NaeI	GCCGGC	1 cut(s)	241
NgoMIV	GCCGGC	1 cut(s)	239
NlaIII	CATG	9 cut(s)	181, 215, 459, 512, 569, 734, 941, 1022, 1130
NlaIV	GGNNCC	3 cut(s)	21, 196, 664
NmuCI	GTSAC	4 cut(s)	550, 673, 700, 1069
NsiI	ATGCAT	1 cut(s)	1020
PaeR7I	CTCGAG	1 cut(s)	835
PagI	TCATGA	3 cut(s)	211, 730, 1126
PdiI	GCCGGC	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	1120
PkrI	GCNGC	1 cut(s)	842
Ppu21I	YACGTR	1 cut(s)	298
PshAI	GACNNNNGTC	1 cut(s)	227
PsiI	TTATAA	1 cut(s)	584
Psp124BI	GAGCTC	1 cut(s)	317
Psp6I	CCWGG	4 cut(s)	183, 344, 604, 1137
PspFI	CCCAGC	1 cut(s)	441
PspGI	CCWGG	4 cut(s)	183, 344, 604, 1137
PspN4I	GGNNCC	3 cut(s)	21, 196, 664
PspPI	GGNCC	1 cut(s)	1141
PspXI	VCTCGAGB	1 cut(s)	835
PstNI	CAGNNNCTG	3 cut(s)	49, 554, 1073
PsuI	RGATCY	4 cut(s)	103, 328, 622, 847
RsaI	GTAC	3 cut(s)	21, 629, 1079
RsaNI	GTAC	3 cut(s)	20, 628, 1078
RseI	CAYNNNNRTG	2 cut(s)	65, 1023
SacI	GAGCTC	1 cut(s)	317
SalI	GTCGAC	1 cut(s)	230
SaqAI	TTAA	6 cut(s)	165, 516, 654, 888, 1035, 1134
SatI	GCNGC	1 cut(s)	841
Sau96I	GGNCC	1 cut(s)	1141
ScrFI	CCNGG	4 cut(s)	185, 346, 606, 1139
SduI	GDGCHC	1 cut(s)	317
SfaNI	GCATC	2 cut(s)	529, 618
SfcI	CTRYAG	1 cut(s)	705
Sfr274I	CTCGAG	1 cut(s)	835
SinI	GGWCC	1 cut(s)	1141
SlaI	CTCGAG	1 cut(s)	835
SmiMI	CAYNNNNRTG	2 cut(s)	65, 1023
SmlI	CTYRAG	3 cut(s)	368, 835, 1083
SmoI	CTYRAG	3 cut(s)	368, 835, 1083
Sse9I	AATT	3 cut(s)	377, 743, 884
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	2 cut(s)	878, 899
SstI	GAGCTC	1 cut(s)	317
StyD4I	CCNGG	4 cut(s)	183, 344, 604, 1137
TaaI	ACNGT	7 cut(s)	67, 154, 556, 673, 706, 1043, 1075
TaiI	ACGT	2 cut(s)	165, 300
TaqI	TCGA	3 cut(s)	231, 739, 836
TaqII	GACCGA	1 cut(s)	1158
TasI	AATT	3 cut(s)	377, 743, 884
TatI	WGTACW	1 cut(s)	627
TfiI	GAWTC	1 cut(s)	1120
Tru1I	TTAA	6 cut(s)	165, 516, 654, 888, 1035, 1134
Tru9I	TTAA	6 cut(s)	165, 516, 654, 888, 1035, 1134
TscAI	CASTG	7 cut(s)	159, 346, 555, 676, 709, 865, 1074
TseFI	GTSAC	4 cut(s)	550, 673, 700, 1069
TseI	GCWGC	1 cut(s)	840
Tsp45I	GTSAC	4 cut(s)	550, 673, 700, 1069
TspDTI	ATGAA	3 cut(s)	200, 1090, 1115
TspGWI	ACGGA	2 cut(s)	131, 770
TspRI	CASTG	7 cut(s)	159, 346, 555, 676, 709, 865, 1074
VpaK11BI	GGWCC	1 cut(s)	1141
XhoI	CTCGAG	1 cut(s)	835
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	2 cut(s)	878, 899
Zsp2I	ATGCAT	1 cut(s)	1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.