Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000326.1

Orthogroup ID

OG0006413

Physical Location & Seq

Genomic Coordinates Reverse (-)

83605 .. 84111

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000326.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgacagcacataagagatggcacgtattcagaggagagagctcagacgaaaaggatctactcttcactgccaggaagtcatcctttttccagctcaagactgaattagatgtgttcttggctggtaacactaaagaagaagcttacgatttcaaggtcaaaggaagctggggggaaagatcatgcaccatatataatggagacaacactatcattgcacaaatgcacaagaaacatgatcttaaaagtagtttgtttgggagagatgcgttctcagtgactgtgtatcctcatgttgattatgcctttataactgccattgtgattgttcttcatgagattaacatggacagaagtggggaagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

122

Amino Acids

14.04

Weight (kDa)

6.29

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006413)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10370 FvH4_6g10371 FvH4_6g10380
malus_domestica	MD12G1183000.v1.1 MD12G1183400.v1.1
prunus_persica	Prupe.6G287600_v2.0.a1 Prupe.6G287800_v2.0.a1
pyrus_communis	pycom12g17190
rosa_chinensis	RchiOBHm_Chr3g0461221 RchiOBHm_Chr3g0461231
rosa_laevigata	RLG00000024945 RLG00000024946
rosa_multiflora	Rmu_sc0009344.1_g000010 Rmu_ssc0000326.1_g000014
rosa_roxburghii	Rroxscaffold_6G00418780 Rroxscaffold_6G00418800
rosa_rugosa	Rorug03G0049000 Rorug03G0049100
rosa_samantha	Rh3AG106300 Rh3AG106400 Rh3BG110500 Rh3BG110600 Rh3CG112200 Rh3CG112300 Rh3DG112400
rosa_wichuraiana	Rw3G009100 Rw3G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
AclWI	GGATC	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	71
AluBI	AGCT	4 cut(s)	42, 94, 143, 168
AluI	AGCT	4 cut(s)	42, 94, 143, 168
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	1 cut(s)	63
AlwNI	CAGNNNCTG	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	44
BccI	CCATC	1 cut(s)	12
BciT130I	CCWGG	1 cut(s)	73
BciVI	GTATCC	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	297
Bme1390I	CCNGG	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	80
BsaAI	YACGTR	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	73
BseGI	GGATG	1 cut(s)	80
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	2 cut(s)	57, 288
BseRI	GAGGAG	1 cut(s)	48
BseYI	CCCAGC	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	3 cut(s)	55, 179, 238
BspCNI	CTCAG	2 cut(s)	56, 287
BspHI	TCATGA	1 cut(s)	334
BspPI	GGATC	1 cut(s)	63
BsrDI	GCAATG	1 cut(s)	213
BssMI	GATC	3 cut(s)	55, 179, 238
Bst2UI	CCWGG	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	283
Bst6I	CTCTTC	1 cut(s)	68
BstBAI	YACGTR	1 cut(s)	25
BstDEI	CTNAG	2 cut(s)	43, 274
BstF5I	GGATG	1 cut(s)	80
BstKTI	GATC	3 cut(s)	58, 182, 241
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	3 cut(s)	55, 179, 238
BstNI	CCWGG	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuI	GTATCC	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	80
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	66, 282
CaiI	CAGNNNCTG	1 cut(s)	281
CciI	TCATGA	1 cut(s)	334
CviAII	CATG	5 cut(s)	183, 236, 293, 335, 346
CviJI	RGCY	5 cut(s)	42, 94, 122, 143, 168
CviKI_1	RGCY	5 cut(s)	42, 94, 122, 143, 168
DdeI	CTNAG	2 cut(s)	43, 274
DpnI	GATC	3 cut(s)	57, 181, 240
DpnII	GATC	3 cut(s)	55, 179, 238
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	42
EcoICRI	GAGCTC	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	44
FaeI	CATG	5 cut(s)	186, 239, 296, 338, 349
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FatI	CATG	5 cut(s)	182, 235, 292, 334, 345
FokI	GGATG	1 cut(s)	67
FriOI	GRGCYC	1 cut(s)	44
GsaI	CCCAGC	1 cut(s)	172
Hin1II	CATG	5 cut(s)	186, 239, 296, 338, 349
HindIII	AAGCTT	1 cut(s)	141
Hpy188I	TCNGA	2 cut(s)	32, 46
Hpy188III	TCNNGA	2 cut(s)	97, 335
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	3 cut(s)	186, 218, 226
HpyF3I	CTNAG	2 cut(s)	43, 274
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	5 cut(s)	186, 239, 296, 338, 349
Kzo9I	GATC	3 cut(s)	55, 179, 238
LpnPI	CCDG	5 cut(s)	58, 85, 104, 108, 154
LweI	GCATC	1 cut(s)	256
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	125, 277
MalI	GATC	3 cut(s)	57, 181, 240
MboI	GATC	3 cut(s)	55, 179, 238
MboII	GAAGA	3 cut(s)	55, 149, 323
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	1 cut(s)	104
MnlI	CCTC	2 cut(s)	26, 300
MseI	TTAA	2 cut(s)	243, 342
MspR9I	CCNGG	1 cut(s)	73
MvaI	CCWGG	1 cut(s)	73
NdeII	GATC	3 cut(s)	55, 179, 238
NlaIII	CATG	5 cut(s)	186, 239, 296, 338, 349
NmuCI	GTSAC	1 cut(s)	277
PagI	TCATGA	1 cut(s)	334
Ppu21I	YACGTR	1 cut(s)	25
PsiI	TTATAA	1 cut(s)	311
Psp124BI	GAGCTC	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	71
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	44
SaqAI	TTAA	2 cut(s)	243, 342
Sau3AI	GATC	3 cut(s)	55, 179, 238
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	6 cut(s)	27, 44, 96, 145, 159, 170
SfaNI	GCATC	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	104
SstI	GAGCTC	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	71
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	1 cut(s)	27
TasI	AATT	1 cut(s)	104
Tru1I	TTAA	2 cut(s)	243, 342
Tru9I	TTAA	2 cut(s)	243, 342
TscAI	CASTG	2 cut(s)	73, 282
TseFI	GTSAC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	323
TspRI	CASTG	2 cut(s)	73, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.