Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006413

Physical Location & Seq

Genomic Coordinates Reverse (-)

40649779 .. 40651157

Gene Structure 1379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024946

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTCCTATGCCGTGCCGGTGCCTGCGGCCGGGCCAAGCTCTCAGCCGCTGGCAAACCCCGTGACGGTCGTTAGCCCGCAGTTCCAAGCAACCTACCCTGTGGATCTGGTCATCACGGAGAAGATGATGTCGATCAAGGAAGGTGCTTTTGCAGTGTCAGACGTTAATGGAAATGTCATGTTCCAGATTAAAGGCTCCTTGTTCAGCTTTCATGATCGTCGAACTTTGGTCGACAGCGCCGGCACTCCTATAGTCTCCTTCCGACAAAAGATATTGACGGCACATAGGAGATGGCATGTATTTAGAGGAGAGAGCTCAGACGCCAAAGATCTACTCTTTAGTGTCAAAAAGTCATCCCTTTTCCAACTGAAGACAGAATTAGATGTGTTCTTGGCTGTTAATACTAAAGAACAAGCGTACGATTTCAAGGTCAAAGGAAGCTGGGGGGAAAGATCATGCACCATATATGATGGAAACAACAATATCATTGCACAAATGCACAAGAAACATGATCTTAAAAGTATATTCTTTGGGAGAGATGCGTTTGCGGTGACTGTGTATCCTCATGTTGATTACGCCTTTATAGTTGCCATTGTGGTTGTTCTTCATGAGATTAACATGGACAGAAGTGGGCAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

214

Amino Acids

23.79

Weight (kDa)

8.59

Isoelectric Point (pI)

50.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	34 - 202	1.1e-52	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006413)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10370 FvH4_6g10371 FvH4_6g10380
malus_domestica	MD12G1183000.v1.1 MD12G1183400.v1.1
prunus_persica	Prupe.6G287600_v2.0.a1 Prupe.6G287800_v2.0.a1
pyrus_communis	pycom12g17190
rosa_chinensis	RchiOBHm_Chr3g0461221 RchiOBHm_Chr3g0461231
rosa_laevigata	RLG00000024945 RLG00000024946
rosa_multiflora	Rmu_sc0009344.1_g000010 Rmu_ssc0000326.1_g000014
rosa_roxburghii	Rroxscaffold_6G00418780 Rroxscaffold_6G00418800
rosa_rugosa	Rorug03G0049000 Rorug03G0049100
rosa_samantha	Rh3AG106300 Rh3AG106400 Rh3BG110500 Rh3BG110600 Rh3CG112200 Rh3CG112300 Rh3DG112400
rosa_wichuraiana	Rw3G009100 Rw3G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	4 cut(s)	26, 47, 77, 548
AclWI	GGATC	1 cut(s)	111
AcoI	YGGCCR	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	389
AcyI	GRCGYC	1 cut(s)	321
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	2 cut(s)	29, 64
AgsI	TTSAA	1 cut(s)	427
AluBI	AGCT	4 cut(s)	39, 207, 315, 441
AluI	AGCT	4 cut(s)	39, 207, 315, 441
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	259
AlwI	GGATC	1 cut(s)	111
AlwNI	CAGNNNCTG	1 cut(s)	49
AoxI	GGCC	2 cut(s)	27, 32
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	32
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	562
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	317
BbsI	GAAGAC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	317
BccI	CCATC	2 cut(s)	285, 464
BceAI	ACGGC	1 cut(s)	294
BciVI	GTATCC	1 cut(s)	570
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	259
BfmI	CTRYAG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	240
BfuI	GTATCC	1 cut(s)	570
BglII	AGATCT	1 cut(s)	328
BisI	GCNGC	2 cut(s)	27, 47
BlsI	GCNGC	2 cut(s)	28, 48
Bme1390I	CCNGG	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	2 cut(s)	21, 196
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	1 cut(s)	529
BpiI	GAAGAC	1 cut(s)	377
BpuMI	CCSGG	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 64
Bse118I	RCCGGY	2 cut(s)	16, 239
Bse3DI	GCAATG	1 cut(s)	486
Bse8I	GATNNNNATC	1 cut(s)	131
BseGI	GGATG	1 cut(s)	353
BseJI	GATNNNNATC	1 cut(s)	131
BseLI	CCNNNNNNNGG	2 cut(s)	29, 64
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	2 cut(s)	56, 330
BseRI	GAGGAG	1 cut(s)	321
BseX3I	CGGCCG	1 cut(s)	27
BseYI	CCCAGC	1 cut(s)	441
Bsh1285I	CGRYCG	2 cut(s)	30, 69
BshFI	GGCC	2 cut(s)	29, 34
BshNI	GGYRCC	1 cut(s)	19
BsiEI	CGRYCG	2 cut(s)	30, 69
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	3 cut(s)	17, 30, 240
BsiWI	CGTACG	1 cut(s)	417
BslI	CCNNNNNNNGG	2 cut(s)	29, 64
BsmAI	GTCTC	1 cut(s)	259
BsnI	GGCC	2 cut(s)	29, 34
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	6 cut(s)	103, 132, 214, 328, 452, 511
BspACI	CCGC	4 cut(s)	26, 47, 77, 548
BspANI	GGCC	2 cut(s)	29, 34
BspCNI	CTCAG	2 cut(s)	55, 329
BspHI	TCATGA	2 cut(s)	211, 607
BspLI	GGNNCC	2 cut(s)	21, 196
BspPI	GGATC	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	486
BsrFI	RCCGGY	2 cut(s)	16, 239
BssAI	RCCGGY	2 cut(s)	16, 239
BssMI	GATC	6 cut(s)	103, 132, 214, 328, 452, 511
BssNI	GRCGYC	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	67, 556
BstACI	GRCGYC	1 cut(s)	321
BstC8I	GCNNGC	4 cut(s)	24, 51, 77, 241
BstDEI	CTNAG	2 cut(s)	42, 316
BstF5I	GGATG	1 cut(s)	353
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	6 cut(s)	106, 135, 217, 331, 455, 514
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	6 cut(s)	103, 132, 214, 328, 452, 511
BstMCI	CGRYCG	2 cut(s)	30, 69
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	1 cut(s)	249
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	2 cut(s)	103, 328
BstYI	RGATCY	2 cut(s)	103, 328
BstZI	CGGCCG	1 cut(s)	27
BsuI	GTATCC	1 cut(s)	570
BsuRI	GGCC	2 cut(s)	29, 34
BtsCI	GGATG	1 cut(s)	353
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	4 cut(s)	24, 51, 77, 241
CaiI	CAGNNNCTG	1 cut(s)	49
CciI	TCATGA	2 cut(s)	211, 607
CfoI	GCGC	1 cut(s)	239
Cfr10I	RCCGGY	2 cut(s)	16, 239
Cfr13I	GGNCC	1 cut(s)	32
CseI	GACGC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	8 cut(s)	178, 212, 296, 456, 509, 566, 608, 619
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	2 cut(s)	42, 316
DpnI	GATC	6 cut(s)	105, 134, 216, 330, 454, 513
DpnII	GATC	6 cut(s)	103, 132, 214, 328, 452, 511
EaeI	YGGCCR	1 cut(s)	27
EagI	CGGCCG	1 cut(s)	27
Ecl136II	GAGCTC	1 cut(s)	315
EclXI	CGGCCG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	317
Eco52I	CGGCCG	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	389
EcoICRI	GAGCTC	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	317
FaeI	CATG	8 cut(s)	181, 215, 299, 459, 512, 569, 611, 622
FatI	CATG	8 cut(s)	177, 211, 295, 455, 508, 565, 607, 618
FauI	CCCGC	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	2 cut(s)	27, 47
FokI	GGATG	1 cut(s)	340
FriOI	GRGCYC	1 cut(s)	317
Fsp4HI	GCNGC	2 cut(s)	27, 47
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	2 cut(s)	27, 47
GsaI	CCCAGC	1 cut(s)	445
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	29, 34
HapII	CCGG	3 cut(s)	17, 30, 240
HgaI	GACGC	1 cut(s)	329
HhaI	GCGC	1 cut(s)	239
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	8 cut(s)	181, 215, 299, 459, 512, 569, 611, 622
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HpaII	CCGG	3 cut(s)	17, 30, 240
HphI	GGTGA	1 cut(s)	562
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	3 cut(s)	160, 263, 319
Hpy188III	TCNNGA	3 cut(s)	184, 212, 608
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	2 cut(s)	134, 268
HpyCH4III	ACNGT	2 cut(s)	67, 556
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	4 cut(s)	152, 459, 491, 499
HpyF3I	CTNAG	2 cut(s)	42, 316
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	8 cut(s)	181, 215, 299, 459, 512, 569, 611, 622
HspAI	GCGC	1 cut(s)	237
KroI	GCCGGC	1 cut(s)	239
KroNI	GCCGGC	1 cut(s)	241
Kzo9I	GATC	6 cut(s)	103, 132, 214, 328, 452, 511
LmnI	GCTCC	1 cut(s)	200
LweI	GCATC	1 cut(s)	529
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	2 cut(s)	61, 550
MalI	GATC	6 cut(s)	105, 134, 216, 330, 454, 513
MboI	GATC	6 cut(s)	103, 132, 214, 328, 452, 511
MboII	GAAGA	3 cut(s)	133, 382, 596
MflI	RGATCY	2 cut(s)	103, 328
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	1 cut(s)	377
MmeI	TCCRAC	2 cut(s)	286, 388
MnlI	CCTC	2 cut(s)	299, 573
MroNI	GCCGGC	1 cut(s)	239
MseI	TTAA	5 cut(s)	165, 189, 399, 516, 615
MspA1I	CMGCKG	1 cut(s)	49
MspI	CCGG	3 cut(s)	17, 30, 240
MspR9I	CCNGG	1 cut(s)	31
NaeI	GCCGGC	1 cut(s)	241
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	6 cut(s)	103, 132, 214, 328, 452, 511
NgoMIV	GCCGGC	1 cut(s)	239
NlaIII	CATG	8 cut(s)	181, 215, 299, 459, 512, 569, 611, 622
NlaIV	GGNNCC	2 cut(s)	21, 196
NmuCI	GTSAC	2 cut(s)	61, 550
NspI	RCATGY	1 cut(s)	299
PagI	TCATGA	2 cut(s)	211, 607
PdiI	GCCGGC	1 cut(s)	241
Pfl23II	CGTACG	1 cut(s)	417
PkrI	GCNGC	2 cut(s)	28, 48
Psp124BI	GAGCTC	1 cut(s)	317
PspFI	CCCAGC	1 cut(s)	441
PspLI	CGTACG	1 cut(s)	417
PspN4I	GGNNCC	2 cut(s)	21, 196
PspPI	GGNCC	1 cut(s)	32
PstNI	CAGNNNCTG	1 cut(s)	49
PsuI	RGATCY	2 cut(s)	103, 328
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SacI	GAGCTC	1 cut(s)	317
SalI	GTCGAC	1 cut(s)	230
SaqAI	TTAA	5 cut(s)	165, 189, 399, 516, 615
SatI	GCNGC	2 cut(s)	27, 47
Sau3AI	GATC	6 cut(s)	103, 132, 214, 328, 452, 511
Sau96I	GGNCC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	8 cut(s)	41, 95, 145, 165, 209, 317, 432, 443
SfaNI	GCATC	1 cut(s)	529
SfcI	CTRYAG	1 cut(s)	249
Sse9I	AATT	1 cut(s)	377
SsiI	CCGC	4 cut(s)	26, 47, 77, 548
SstI	GAGCTC	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	2 cut(s)	67, 556
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	3 cut(s)	131, 220, 231
TasI	AATT	1 cut(s)	377
TauI	GCSGC	2 cut(s)	29, 49
Tru1I	TTAA	5 cut(s)	165, 189, 399, 516, 615
Tru9I	TTAA	5 cut(s)	165, 189, 399, 516, 615
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	2 cut(s)	61, 550
Tsp45I	GTSAC	2 cut(s)	61, 550
TspDTI	ATGAA	2 cut(s)	200, 596
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	1 cut(s)	159
XceI	RCATGY	1 cut(s)	299
XmiI	GTMKAC	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.