FvH4_6g11220

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008870
Physical Location & Seq
Forward (+)
6687202 .. 6688080
879 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11220.t1

Sequence Viewer

Length: 879 bp
ATGGTCAGAGCTCTTTGCCATGATTTAGCATTGGTTGAAAACCAGATCCCCTTCTTTACTCTTGAAGTCATATATGATATGATCAAGCCTCGATTAATGAGCAAGTGCAAAGCACCAGAGTCTGTCACTAGTCTTGCTTTAAGTTTCTTCAAGCCTATGATGAGCCAAAACTCATATATAGAGGAGCATTCCTACACAGACTGCATACATTTGCTTGATCTTTTGCACAAATCCTCCTTGCTTGCAGCTTCTGGAGTAGGTACCGCCTTCGAAAGAAGAGTAATTTTGAATCATGCAGCTGGTAATTTGACTCCAGGGGATCAATATTATTCGGGATCATTAGACTACTGCGCTTCAGAACTTGTACAATCTGGAATTGAGCTTTGCAAAGAATCCGGAGACTCTTTGGTGAACATAAACTTCATGAGACAAGGAGGGCTGATCAAAATCCCACCGGTGTTGATTTACGATATAAGGGATTCACTATTCAGAAACCTGATTGCCTACGAGCAAACTAATATCAACATTAGGCATCATGTTACATCGTACGCTATCCTCATGAAAACTCTCATCCGTTCTCCACGAGATGTGAAGCTACTTAGGAAAAGAGGCATCATATCTCAGAATTGGATCGAAGACGAAGCATATGTAACACAGTTCAGAAGTCTTCTACAAGAAGTTATTCCCAAGGACTTCTATTTCGATGATTTCTGTGAGGAAGTGAATGCCTACGCGAGTAAGTTCTGGTTTCGTAGAAAGATACACTCTCTATATCTAACTTATTTCTCAACAGCATGGAGTATGATATCATTCATTGCTGCCATTTGCCTTTTCATTCTCACGTTCTTACAAACATACTTTACAATCAACCCTCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

293

Amino Acids

33.7

Weight (kDa)

7.07

Isoelectric Point (pI)

51.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 3 - 280 1.4e-58 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 260
AccII CGCG 1 cut(s) 734
AccIII TCCGGA 1 cut(s) 395
AciI CCGC 1 cut(s) 264
AclWI GGATC 4 cut(s) 40, 327, 343, 638
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 3 cut(s) 262, 366, 548
AgeI ACCGGT 1 cut(s) 454
AgsI TTSAA 4 cut(s) 38, 65, 151, 289
AhlI ACTAGT 1 cut(s) 128
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 5 cut(s) 11, 248, 299, 382, 595
AluI AGCT 5 cut(s) 11, 248, 299, 382, 595
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 2 cut(s) 393, 421
AlwI GGATC 4 cut(s) 40, 327, 343, 638
AlwNI CAGNNNCTG 2 cut(s) 122, 251
Aor13HI TCCGGA 1 cut(s) 395
ApeKI GCWGC 3 cut(s) 245, 296, 818
ArsI GACNNNNNNTTYG 2 cut(s) 683, 715
AseI ATTAAT 1 cut(s) 95
AsiGI ACCGGT 1 cut(s) 454
Asp700I GAANNNNTTC 1 cut(s) 681
Asp718I GGTACC 1 cut(s) 260
AspLEI GCGC 1 cut(s) 353
AsuHPI GGTGA 1 cut(s) 421
AsuII TTCGAA 1 cut(s) 270
BanI GGYRCC 1 cut(s) 260
BanII GRGCYC 1 cut(s) 13
BauI CACGAG 1 cut(s) 582
BbsI GAAGAC 2 cut(s) 642, 659
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 3 cut(s) 257, 308, 805
BciT130I CCWGG 1 cut(s) 315
BclI TGATCA 2 cut(s) 81, 441
BcoDI GTCTC 2 cut(s) 393, 421
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 1 cut(s) 129
BisI GCNGC 3 cut(s) 246, 297, 819
BlsI GCNGC 3 cut(s) 247, 298, 820
Bme1390I CCNGG 1 cut(s) 315
BmiI GGNNCC 1 cut(s) 262
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 2 cut(s) 541, 621
BpiI GAAGAC 2 cut(s) 642, 659
BpmI CTGGAG 2 cut(s) 273, 297
Bpu14I TTCGAA 1 cut(s) 270
BsaBI GATNNNNATC 1 cut(s) 446
BsaJI CCNNGG 2 cut(s) 314, 687
BsaWI WCCGGW 2 cut(s) 395, 454
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bse118I RCCGGY 1 cut(s) 454
Bse3DI GCAATG 1 cut(s) 813
Bse8I GATNNNNATC 1 cut(s) 446
BseAI TCCGGA 1 cut(s) 395
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 2 cut(s) 314, 687
BseGI GGATG 1 cut(s) 570
BseJI GATNNNNATC 1 cut(s) 446
BseMI GCAATG 1 cut(s) 813
BseMII CTCAG 1 cut(s) 635
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 3 cut(s) 257, 308, 805
Bsh1236I CGCG 1 cut(s) 734
BshNI GGYRCC 1 cut(s) 260
BshTI ACCGGT 1 cut(s) 454
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 2 cut(s) 396, 455
BsiWI CGTACG 1 cut(s) 546
BsmAI GTCTC 2 cut(s) 393, 421
BsmI GAATGC 2 cut(s) 187, 730
Bsp119I TTCGAA 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 13
Bsp13I TCCGGA 1 cut(s) 395
Bsp1407I TGTACA 1 cut(s) 364
Bsp143I GATC 7 cut(s) 45, 81, 217, 319, 335, 441, 630
BspACI CCGC 1 cut(s) 264
BspCNI CTCAG 1 cut(s) 634
BspEI TCCGGA 1 cut(s) 395
BspFNI CGCG 1 cut(s) 734
BspHI TCATGA 2 cut(s) 423, 558
BspLI GGNNCC 1 cut(s) 262
BspPI GGATC 4 cut(s) 40, 327, 343, 638
BspT104I TTCGAA 1 cut(s) 270
BspT107I GGYRCC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 813
BsrFI RCCGGY 1 cut(s) 454
BsrGI TGTACA 1 cut(s) 364
BssAI RCCGGY 1 cut(s) 454
BssECI CCNNGG 2 cut(s) 314, 687
BssMI GATC 7 cut(s) 45, 81, 217, 319, 335, 441, 630
BssSI CACGAG 1 cut(s) 582
BssT1I CCWWGG 1 cut(s) 687
Bst2BI CACGAG 1 cut(s) 582
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 657
Bst6I CTCTTC 1 cut(s) 271
BstAUI TGTACA 1 cut(s) 364
BstBI TTCGAA 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 599, 621
BstF5I GGATG 1 cut(s) 570
BstFNI CGCG 1 cut(s) 734
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 7 cut(s) 48, 84, 220, 322, 338, 444, 633
BstMAI GTCTC 2 cut(s) 393, 421
BstMBI GATC 7 cut(s) 45, 81, 217, 319, 335, 441, 630
BstNI CCWGG 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 313
BstUI CGCG 1 cut(s) 734
BstV1I GCAGC 3 cut(s) 257, 308, 805
BstV2I GAAGAC 2 cut(s) 642, 659
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BtsCI GGATG 1 cut(s) 570
Cac8I GCNNGC 1 cut(s) 243
CaiI CAGNNNCTG 2 cut(s) 122, 251
CciI TCATGA 2 cut(s) 423, 558
CfoI GCGC 1 cut(s) 353
Cfr10I RCCGGY 1 cut(s) 454
Csp6I GTAC 3 cut(s) 261, 365, 547
CspAI ACCGGT 1 cut(s) 454
CspCI CAANNNNNGTGG 2 cut(s) 441, 476
CviAII CATG 6 cut(s) 20, 293, 424, 536, 559, 795
CviJI RGCY 9 cut(s) 11, 88, 154, 165, 248, 299, 382, 439, 595
CviKI_1 RGCY 9 cut(s) 11, 88, 154, 165, 248, 299, 382, 439, 595
CviQI GTAC 3 cut(s) 261, 365, 547
DdeI CTNAG 2 cut(s) 599, 621
DpnI GATC 7 cut(s) 47, 83, 219, 321, 337, 443, 632
DpnII GATC 7 cut(s) 45, 81, 217, 319, 335, 441, 630
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 687
Eco24I GRGCYC 1 cut(s) 13
Eco32I GATATC 1 cut(s) 807
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 339
EcoICRI GAGCTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 313
EcoRV GATATC 1 cut(s) 807
EcoT14I CCWWGG 1 cut(s) 687
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 687
FaeI CATG 6 cut(s) 23, 296, 427, 539, 562, 798
FatI CATG 6 cut(s) 19, 292, 423, 535, 558, 794
FauNDI CATATG 1 cut(s) 646
FbaI TGATCA 2 cut(s) 81, 441
Fnu4HI GCNGC 3 cut(s) 246, 297, 819
FokI GGATG 1 cut(s) 557
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 3 cut(s) 246, 297, 819
FspBI CTAG 1 cut(s) 129
GlaI GCGC 1 cut(s) 352
GluI GCNGC 3 cut(s) 246, 297, 819
GsuI CTGGAG 2 cut(s) 273, 297
HapII CCGG 2 cut(s) 396, 455
HhaI GCGC 1 cut(s) 353
Hin1II CATG 6 cut(s) 23, 296, 427, 539, 562, 798
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HinfI GANTC 6 cut(s) 119, 289, 310, 392, 401, 479
HpaII CCGG 2 cut(s) 396, 455
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 5 cut(s) 8, 358, 491, 624, 662
Hpy188III TCNNGA 7 cut(s) 62, 252, 333, 372, 396, 424, 559
Hpy8I GTNNAC 1 cut(s) 412
HpyAV CCTTC 2 cut(s) 61, 277
HpyCH4III ACNGT 1 cut(s) 657
HpyCH4IV ACGT 1 cut(s) 842
HpyCH4V TGCA 6 cut(s) 108, 204, 226, 245, 296, 387
HpyF3I CTNAG 2 cut(s) 599, 621
HpySE526I ACGT 1 cut(s) 842
Hsp92II CATG 6 cut(s) 23, 296, 427, 539, 562, 798
HspAI GCGC 1 cut(s) 351
Kpn2I TCCGGA 1 cut(s) 395
KpnI GGTACC 1 cut(s) 264
Ksp22I TGATCA 2 cut(s) 81, 441
Kzo9I GATC 7 cut(s) 45, 81, 217, 319, 335, 441, 630
LmnI GCTCC 1 cut(s) 184
Lsp1109I GCAGC 3 cut(s) 257, 308, 805
LweI GCATC 2 cut(s) 541, 621
MaeI CTAG 1 cut(s) 129
MaeII ACGT 1 cut(s) 842
MaeIII GTNAC 3 cut(s) 124, 538, 649
MalI GATC 7 cut(s) 47, 83, 219, 321, 337, 443, 632
MboI GATC 7 cut(s) 45, 81, 217, 319, 335, 441, 630
MboII GAAGA 4 cut(s) 139, 288, 647, 659
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 4 cut(s) 282, 304, 375, 625
MlyI GAGTC 3 cut(s) 128, 304, 395
MnlI CCTC 7 cut(s) 99, 175, 244, 428, 566, 602, 709
MroI TCCGGA 1 cut(s) 395
MroXI GAANNNNTTC 1 cut(s) 681
MseI TTAA 2 cut(s) 95, 140
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 2 cut(s) 396, 455
MspR9I CCNGG 1 cut(s) 315
Mva1269I GAATGC 2 cut(s) 187, 730
MvaI CCWGG 1 cut(s) 315
MvnI CGCG 1 cut(s) 734
NdeI CATATG 1 cut(s) 646
NdeII GATC 7 cut(s) 45, 81, 217, 319, 335, 441, 630
NlaIII CATG 6 cut(s) 23, 296, 427, 539, 562, 798
NlaIV GGNNCC 1 cut(s) 262
NmuCI GTSAC 1 cut(s) 124
NspV TTCGAA 1 cut(s) 270
PagI TCATGA 2 cut(s) 423, 558
PctI GAATGC 2 cut(s) 187, 730
PdmI GAANNNNTTC 1 cut(s) 681
PfeI GAWTC 3 cut(s) 289, 392, 479
Pfl23II CGTACG 1 cut(s) 546
PinAI ACCGGT 1 cut(s) 454
PkrI GCNGC 3 cut(s) 247, 298, 820
PleI GAGTC 3 cut(s) 127, 304, 395
PpsI GAGTC 3 cut(s) 127, 304, 395
PshBI ATTAAT 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspLI CGTACG 1 cut(s) 546
PspN4I GGNNCC 1 cut(s) 262
PstNI CAGNNNCTG 2 cut(s) 122, 251
PsuI RGATCY 1 cut(s) 45
PvuII CAGCTG 1 cut(s) 299
RsaI GTAC 3 cut(s) 262, 366, 548
RsaNI GTAC 3 cut(s) 261, 365, 547
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 2 cut(s) 95, 140
SatI GCNGC 3 cut(s) 246, 297, 819
Sau3AI GATC 7 cut(s) 45, 81, 217, 319, 335, 441, 630
SchI GAGTC 3 cut(s) 128, 304, 395
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 1 cut(s) 13
SetI ASST 8 cut(s) 13, 250, 262, 301, 384, 498, 597, 845
SfaNI GCATC 2 cut(s) 541, 621
SfuI TTCGAA 1 cut(s) 270
SgrAI CRCCGGYG 1 cut(s) 454
SpeI ACTAGT 1 cut(s) 128
Sse9I AATT 4 cut(s) 282, 304, 375, 625
SsiI CCGC 1 cut(s) 264
SspI AATATT 1 cut(s) 326
SspMI CTAG 1 cut(s) 129
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 1 cut(s) 687
TaaI ACNGT 1 cut(s) 657
TaiI ACGT 1 cut(s) 845
TaqI TCGA 4 cut(s) 91, 270, 633, 702
TasI AATT 4 cut(s) 282, 304, 375, 625
TatI WGTACW 1 cut(s) 364
TfiI GAWTC 3 cut(s) 289, 392, 479
Tru1I TTAA 2 cut(s) 95, 140
Tru9I TTAA 2 cut(s) 95, 140
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 3 cut(s) 245, 296, 818
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 4 cut(s) 412, 575, 802, 823
TspGWI ACGGA 1 cut(s) 563
VspI ATTAAT 1 cut(s) 95
XmnI GAANNNNTTC 1 cut(s) 681
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.