Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004225.1

Orthogroup ID

OG0008870

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1478

Gene Structure 1477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004225.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 503 bp

atggagcagctgggggaggtagggaggtcgtggagagagccggacggaatgagcctacggggaggatctggcagagggagaggtgacgtgtgtgaagaaaccccgacggagggggtggagaagctggaagtggaggaggagtgggagatactgaagcggatgaaggtggatatcgacaataagctcgacagcatccccgtgtcgcgtctcaacacagagaaagagataagagtggagactcgcatctgtagagttcctgagaaacttcgagaactgaaggaggatgcctacaatccccgagttgtttcaattggacctttccattcctgtaaggattaccttgcaccaatgtcacgacataaatactattacatgtcccttctcattcacagcaaagatgctgaaaactgcttggatgaatgcatctgcgctattactgattttgacgttgtgattcgtcaatgctacgtcgaagatatcagtgtttcaaatgatgagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

167

Amino Acids

19.27

Weight (kDa)

4.84

Isoelectric Point (pI)

56.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11220
prunus_persica	Prupe.6G273900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0462701 RchiOBHm_Chr3g0462721
rosa_laevigata	RLG00000024837
rosa_multiflora	Rmu_co8146084.1_g000001 Rmu_co8365749.1_g000001 Rmu_sc0000766.1_g000001 Rmu_sc0000766.1_g000002 Rmu_sc0004225.1_g000001 Rmu_sc0011057.1_g000006
rosa_roxburghii	Rroxscaffold_6G00417250
rosa_rugosa	Rorug03G0058800
rosa_samantha	Rh3AG116700 Rh3AG116800 Rh3BG120300 Rh3BG120400 Rh3CG123400 Rh3CG123500 Rh3DG122200 Rh5DG446700
rosa_wichuraiana	Rw3G009880 Rw3G009890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	205
AciI	CCGC	1 cut(s)	157
AclWI	GGATC	1 cut(s)	73
AcuI	CTGAAG	2 cut(s)	173, 296
AfiI	CCNNNNNNNGG	2 cut(s)	109, 110
AflIII	ACRYGT	2 cut(s)	87, 372
AgsI	TTSAA	2 cut(s)	309, 489
AjiI	CACGTC	1 cut(s)	88
AluBI	AGCT	4 cut(s)	10, 124, 184, 499
AluI	AGCT	4 cut(s)	10, 124, 184, 499
Alw26I	GTCTC	2 cut(s)	212, 230
AlwI	GGATC	1 cut(s)	73
Ama87I	CYCGRG	1 cut(s)	297
ApeKI	GCWGC	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	431
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	95
AvaI	CYCGRG	1 cut(s)	297
AvaII	GGWCC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	19
BcoDI	GTCTC	2 cut(s)	212, 230
BfmI	CTRYAG	1 cut(s)	247
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
Bme18I	GGWCC	1 cut(s)	314
BmeT110I	CYCGRG	1 cut(s)	297
BmgBI	CACGTC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	314
BmsI	GCATC	5 cut(s)	201, 252, 274, 388, 432
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 110
BseGI	GGATG	4 cut(s)	165, 192, 289, 421
BseLI	CCNNNNNNNGG	2 cut(s)	109, 110
BseMII	CTCAG	1 cut(s)	249
BseRI	GAGGAG	2 cut(s)	149, 152
BseXI	GCAGC	1 cut(s)	19
BseYI	CCCAGC	1 cut(s)	10
Bsh1236I	CGCG	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	109, 110
BsmAI	GTCTC	2 cut(s)	212, 230
BsmBI	CGTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	361
BsmI	GAATGC	1 cut(s)	425
BsoBI	CYCGRG	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	65
BspACI	CCGC	1 cut(s)	157
BspCNI	CTCAG	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	205
BspPI	GGATC	1 cut(s)	73
BssMI	GATC	1 cut(s)	65
BstDEI	CTNAG	2 cut(s)	258, 500
BstF5I	GGATG	4 cut(s)	165, 192, 289, 421
BstFNI	CGCG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	1 cut(s)	68
BstMAI	GTCTC	2 cut(s)	212, 230
BstMBI	GATC	1 cut(s)	65
BstNSI	RCATGY	1 cut(s)	376
BstSFI	CTRYAG	1 cut(s)	247
BstUI	CGCG	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BtrI	CACGTC	1 cut(s)	88
BtsCI	GGATG	4 cut(s)	165, 192, 289, 421
BtsIMutI	CAGTG	1 cut(s)	487
CfoI	GCGC	1 cut(s)	431
Cfr13I	GGNCC	1 cut(s)	314
CseI	GACGC	1 cut(s)	194
CviAII	CATG	1 cut(s)	373
CviJI	RGCY	6 cut(s)	10, 40, 54, 124, 184, 499
CviKI_1	RGCY	6 cut(s)	10, 40, 54, 124, 184, 499
DdeI	CTNAG	2 cut(s)	258, 500
DpnI	GATC	1 cut(s)	67
DpnII	GATC	1 cut(s)	65
Eco32I	GATATC	2 cut(s)	172, 478
Eco47I	GGWCC	1 cut(s)	314
Eco57I	CTGAAG	2 cut(s)	173, 296
Eco88I	CYCGRG	1 cut(s)	297
EcoRV	GATATC	2 cut(s)	172, 478
EcoT22I	ATGCAT	1 cut(s)	425
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	1 cut(s)	376
FaiI	YATR	2 cut(s)	360, 374
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	8
FokI	GGATG	4 cut(s)	172, 179, 296, 428
Fsp4HI	GCNGC	1 cut(s)	8
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	1 cut(s)	8
GsaI	CCCAGC	1 cut(s)	14
HapII	CCGG	1 cut(s)	41
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	1 cut(s)	431
Hin1II	CATG	1 cut(s)	376
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HinfI	GANTC	2 cut(s)	238, 454
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	1 cut(s)	95
Hpy188III	TCNNGA	3 cut(s)	257, 269, 354
Hpy99I	CGWCG	2 cut(s)	109, 473
HpyAV	CCTTC	3 cut(s)	157, 271, 389
HpyCH4IV	ACGT	3 cut(s)	87, 447, 468
HpyCH4V	TGCA	2 cut(s)	344, 423
HpyF3I	CTNAG	2 cut(s)	258, 500
HpySE526I	ACGT	3 cut(s)	87, 447, 468
Hsp92II	CATG	1 cut(s)	376
HspAI	GCGC	1 cut(s)	429
Kzo9I	GATC	1 cut(s)	65
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	5 cut(s)	54, 54, 110, 270, 340
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	5 cut(s)	201, 252, 274, 388, 432
MaeII	ACGT	3 cut(s)	87, 447, 468
MaeIII	GTNAC	2 cut(s)	83, 351
MalI	GATC	1 cut(s)	67
MboI	GATC	1 cut(s)	65
MboII	GAAGA	2 cut(s)	107, 485
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	1 cut(s)	65
MluCI	AATT	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	232
MnlI	CCTC	9 cut(s)	10, 18, 56, 68, 74, 103, 127, 130, 274
Mph1103I	ATGCAT	1 cut(s)	425
MslI	CAYNNNNRTG	1 cut(s)	197
MspA1I	CMGCKG	1 cut(s)	10
MspI	CCGG	1 cut(s)	41
MunI	CAATTG	1 cut(s)	309
Mva1269I	GAATGC	1 cut(s)	425
MvnI	CGCG	1 cut(s)	205
NdeII	GATC	1 cut(s)	65
NlaIII	CATG	1 cut(s)	376
NmuCI	GTSAC	2 cut(s)	83, 351
NsiI	ATGCAT	1 cut(s)	425
NspI	RCATGY	1 cut(s)	376
PciI	ACATGT	1 cut(s)	372
PctI	GAATGC	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	454
PkrI	GCNGC	1 cut(s)	9
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
PscI	ACATGT	1 cut(s)	372
PspFI	CCCAGC	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	197
SatI	GCNGC	1 cut(s)	8
Sau3AI	GATC	1 cut(s)	65
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	1 cut(s)	232
SfaNI	GCATC	5 cut(s)	201, 252, 274, 388, 432
SfcI	CTRYAG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	197
Sse9I	AATT	1 cut(s)	309
SsiI	CCGC	1 cut(s)	157
TaiI	ACGT	3 cut(s)	90, 450, 471
TaqI	TCGA	4 cut(s)	174, 186, 268, 471
TasI	AATT	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	454
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	2 cut(s)	83, 351
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	2 cut(s)	83, 351
TspDTI	ATGAA	2 cut(s)	176, 432
TspGWI	ACGGA	2 cut(s)	60, 122
TspRI	CASTG	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	314
XceI	RCATGY	1 cut(s)	376
Zsp2I	ATGCAT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.