Rmu_co8365749.1_g000001

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8365749.1
OG0008870
Physical Location & Seq
Reverse (-)
219 .. 1022
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8365749.1_g000001.1.cds

Sequence Viewer

Length: 804 bp
atgaacaacggcaaagcaccagagtcggtcagtagtcttgctttaaatttctttaagcctatgctgagccaaaactcaaatatagtggagcattcgtacccggactgcaaacatttgcttgatctcttgcataaatcctccctgctcgcagtttcaggagatactgctttcacagtctatgacgtcagagatcggagatcgacaatggctttaaaccatgctgcagctgctaatttgagtccagggaatcaatattggggattaaaatattgcgctgaagaacttgtacagtccggaattgagcttcgtaaagagtcaggggactctctggtgaacataaccgccacaagcgaccgccagctgatcatcaacatcccaccggtgttcattgacgaggtaagggattcactcttcaggaacctgattgcctacgaacaaagcagtatcaaaattagtcatcatgtcacatcttatgttatcctcatgaaaagtcttgtccgttctccacgagatgtcaagcttcttaggaaaaaaggcatcatatctcagtattggatcgaagaccaagaatatttaagttgcttcgtaagttttctagatgaagtttttcccagggacttctatttcagttctttgtgtggccaagtggatgcctacgcgaataagttctggtttcgtagaaagatgagcgctctttatcgcacttatttctcaacagcctggagtatgacatcattcattgctgccatttgccttttcattctcacagtcttacaaacatactttaccatcaaccctcgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

267

Amino Acids

30.57

Weight (kDa)

8.51

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
AccII CGCG 1 cut(s) 659
AccIII TCCGGA 1 cut(s) 293
AciI CCGC 2 cut(s) 342, 355
AclWI GGATC 1 cut(s) 563
AcoI YGGCCR 1 cut(s) 640
AcsI RAATTY 1 cut(s) 46
AcuI CTGAAG 2 cut(s) 297, 397
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 2 cut(s) 98, 288
AfeI AGCGCT 1 cut(s) 691
AgeI ACCGGT 1 cut(s) 379
AjnI CCWGG 3 cut(s) 241, 611, 719
AluBI AGCT 4 cut(s) 227, 304, 361, 520
AluI AGCT 4 cut(s) 227, 304, 361, 520
AlwI GGATC 1 cut(s) 563
Aor13HI TCCGGA 1 cut(s) 293
Aor51HI AGCGCT 1 cut(s) 691
AoxI GGCC 1 cut(s) 640
ApeKI GCWGC 4 cut(s) 221, 224, 227, 743
ApoI RAATTY 1 cut(s) 46
AsiGI ACCGGT 1 cut(s) 379
Asp700I GAANNNNTTC 2 cut(s) 606, 665
AspLEI GCGC 2 cut(s) 275, 692
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 343
BalI TGGCCA 1 cut(s) 642
BarI GAAGNNNNNNTAC 2 cut(s) 270, 302
BauI CACGAG 1 cut(s) 507
BbsI GAAGAC 1 cut(s) 567
BbvI GCAGC 4 cut(s) 208, 214, 236, 730
BccI CCATC 1 cut(s) 797
BceAI ACGGC 1 cut(s) 25
BcgI CGANNNNNNTGC 2 cut(s) 6, 40
BciT130I CCWGG 3 cut(s) 243, 613, 721
BclI TGATCA 1 cut(s) 363
BcnI CCSGG 1 cut(s) 101
BfaI CTAG 1 cut(s) 596
BfmI CTRYAG 1 cut(s) 222
BfoI RGCGCY 1 cut(s) 693
BisI GCNGC 4 cut(s) 222, 225, 228, 744
BlpI GCTNAGC 1 cut(s) 65
BlsI GCNGC 4 cut(s) 223, 226, 229, 745
Bme1390I CCNGG 4 cut(s) 101, 243, 613, 721
BmiI GGNNCC 1 cut(s) 419
BmrFI CCNGG 4 cut(s) 101, 243, 613, 721
BmsI GCATC 2 cut(s) 546, 640
BpiI GAAGAC 1 cut(s) 567
BpmI CTGGAG 1 cut(s) 742
Bpu1102I GCTNAGC 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 3 cut(s) 242, 611, 612
BsaWI WCCGGW 2 cut(s) 293, 379
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bse118I RCCGGY 1 cut(s) 379
Bse3DI GCAATG 1 cut(s) 738
BseAI TCCGGA 1 cut(s) 293
BseBI CCWGG 3 cut(s) 243, 613, 721
BseDI CCNNGG 3 cut(s) 242, 611, 612
BseGI GGATG 2 cut(s) 372, 655
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 2 cut(s) 56, 560
BseXI GCAGC 4 cut(s) 208, 214, 236, 730
Bsh1236I CGCG 1 cut(s) 659
Bsh1285I CGRYCG 1 cut(s) 355
BshFI GGCC 1 cut(s) 642
BshTI ACCGGT 1 cut(s) 379
BsiEI CGRYCG 1 cut(s) 355
BsiSI CCGG 3 cut(s) 101, 294, 380
BslFI GGGAC 2 cut(s) 335, 629
BsmFI GGGAC 2 cut(s) 335, 629
BsmI GAATGC 1 cut(s) 91
BsnI GGCC 1 cut(s) 642
Bsp13I TCCGGA 1 cut(s) 293
Bsp1407I TGTACA 1 cut(s) 286
Bsp143I GATC 5 cut(s) 121, 190, 197, 363, 555
Bsp1720I GCTNAGC 1 cut(s) 65
BspACI CCGC 2 cut(s) 342, 355
BspANI GGCC 1 cut(s) 642
BspCNI CTCAG 2 cut(s) 57, 559
BspEI TCCGGA 1 cut(s) 293
BspFNI CGCG 1 cut(s) 659
BspHI TCATGA 1 cut(s) 483
BspLI GGNNCC 1 cut(s) 419
BspMAI CTGCAG 1 cut(s) 226
BspPI GGATC 1 cut(s) 563
BsrDI GCAATG 1 cut(s) 738
BsrFI RCCGGY 1 cut(s) 379
BsrGI TGTACA 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 379
BssECI CCNNGG 3 cut(s) 242, 611, 612
BssMI GATC 5 cut(s) 121, 190, 197, 363, 555
BssNI GRCGYC 1 cut(s) 183
BssSI CACGAG 1 cut(s) 507
Bst2BI CACGAG 1 cut(s) 507
Bst2UI CCWGG 3 cut(s) 243, 613, 721
Bst4CI ACNGT 3 cut(s) 175, 291, 769
Bst6I CTCTTC 1 cut(s) 416
BstACI GRCGYC 1 cut(s) 183
BstAUI TGTACA 1 cut(s) 286
BstC8I GCNNGC 2 cut(s) 147, 359
BstDEI CTNAG 3 cut(s) 65, 524, 546
BstF5I GGATG 2 cut(s) 372, 655
BstFNI CGCG 1 cut(s) 659
BstH2I RGCGCY 1 cut(s) 693
BstHHI GCGC 2 cut(s) 275, 692
BstKTI GATC 5 cut(s) 124, 193, 200, 366, 558
BstMBI GATC 5 cut(s) 121, 190, 197, 363, 555
BstMCI CGRYCG 1 cut(s) 355
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNI CCWGG 3 cut(s) 243, 613, 721
BstSCI CCNGG 4 cut(s) 99, 241, 611, 719
BstSFI CTRYAG 1 cut(s) 222
BstUI CGCG 1 cut(s) 659
BstV1I GCAGC 4 cut(s) 208, 214, 236, 730
BstV2I GAAGAC 1 cut(s) 567
BsuRI GGCC 1 cut(s) 642
BtsCI GGATG 2 cut(s) 372, 655
Cac8I GCNNGC 2 cut(s) 147, 359
CciI TCATGA 1 cut(s) 483
CfoI GCGC 2 cut(s) 275, 692
Cfr10I RCCGGY 1 cut(s) 379
Csp6I GTAC 2 cut(s) 97, 287
CspAI ACCGGT 1 cut(s) 379
CspCI CAANNNNNGTGG 2 cut(s) 66, 101
CviAII CATG 3 cut(s) 218, 461, 484
CviJI RGCY 9 cut(s) 58, 69, 209, 227, 304, 361, 520, 642, 719
CviKI_1 RGCY 9 cut(s) 58, 69, 209, 227, 304, 361, 520, 642, 719
CviQI GTAC 2 cut(s) 97, 287
DdeI CTNAG 3 cut(s) 65, 524, 546
DpnI GATC 5 cut(s) 123, 192, 199, 365, 557
DpnII GATC 5 cut(s) 121, 190, 197, 363, 555
DraI TTTAAA 2 cut(s) 45, 213
EaeI YGGCCR 1 cut(s) 640
Eam1104I CTCTTC 1 cut(s) 416
EarI CTCTTC 1 cut(s) 416
Eco47III AGCGCT 1 cut(s) 691
Eco57I CTGAAG 2 cut(s) 297, 397
EcoRII CCWGG 3 cut(s) 241, 611, 719
FaeI CATG 3 cut(s) 221, 464, 487
FaqI GGGAC 2 cut(s) 335, 629
FatI CATG 3 cut(s) 217, 460, 483
FbaI TGATCA 1 cut(s) 363
Fnu4HI GCNGC 4 cut(s) 222, 225, 228, 744
FokI GGATG 2 cut(s) 359, 662
Fsp4HI GCNGC 4 cut(s) 222, 225, 228, 744
FspBI CTAG 1 cut(s) 596
GlaI GCGC 2 cut(s) 274, 691
GluI GCNGC 4 cut(s) 222, 225, 228, 744
GsuI CTGGAG 1 cut(s) 742
HaeII RGCGCY 1 cut(s) 693
HaeIII GGCC 1 cut(s) 642
HapII CCGG 3 cut(s) 101, 294, 380
HhaI GCGC 2 cut(s) 275, 692
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 3 cut(s) 221, 464, 487
Hin6I GCGC 2 cut(s) 273, 690
HinP1I GCGC 2 cut(s) 273, 690
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 6 cut(s) 23, 238, 247, 314, 323, 404
HpaII CCGG 3 cut(s) 101, 294, 380
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 2 cut(s) 188, 195
Hpy188III TCNNGA 5 cut(s) 156, 294, 415, 484, 596
Hpy8I GTNNAC 1 cut(s) 334
HpyCH4III ACNGT 3 cut(s) 175, 291, 769
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 3 cut(s) 108, 130, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 3 cut(s) 65, 524, 546
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 3 cut(s) 221, 464, 487
HspAI GCGC 2 cut(s) 273, 690
Kpn2I TCCGGA 1 cut(s) 293
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 5 cut(s) 121, 190, 197, 363, 555
LmnI GCTCC 1 cut(s) 88
Lsp1109I GCAGC 4 cut(s) 208, 214, 236, 730
LweI GCATC 2 cut(s) 546, 640
MaeI CTAG 1 cut(s) 596
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 463
MalI GATC 5 cut(s) 123, 192, 199, 365, 557
MboI GATC 5 cut(s) 121, 190, 197, 363, 555
MboII GAAGA 3 cut(s) 290, 403, 572
MlsI TGGCCA 1 cut(s) 642
MluCI AATT 4 cut(s) 46, 232, 297, 450
MluNI TGGCCA 1 cut(s) 642
MlyI GAGTC 4 cut(s) 32, 247, 317, 323
MnlI CCTC 3 cut(s) 148, 388, 491
Mox20I TGGCCA 1 cut(s) 642
MroI TCCGGA 1 cut(s) 293
MroXI GAANNNNTTC 2 cut(s) 606, 665
MscI TGGCCA 1 cut(s) 642
MseI TTAA 5 cut(s) 44, 54, 212, 263, 575
Msp20I TGGCCA 1 cut(s) 642
MspA1I CMGCKG 2 cut(s) 227, 361
MspI CCGG 3 cut(s) 101, 294, 380
MspR9I CCNGG 4 cut(s) 101, 243, 613, 721
Mva1269I GAATGC 1 cut(s) 91
MvaI CCWGG 3 cut(s) 243, 613, 721
MvnI CGCG 1 cut(s) 659
MwoI GCNNNNNNNGC 1 cut(s) 227
NciI CCSGG 1 cut(s) 101
NdeII GATC 5 cut(s) 121, 190, 197, 363, 555
NlaIII CATG 3 cut(s) 221, 464, 487
NlaIV GGNNCC 1 cut(s) 419
NmuCI GTSAC 1 cut(s) 463
PagI TCATGA 1 cut(s) 483
PasI CCCWGGG 1 cut(s) 612
PctI GAATGC 1 cut(s) 91
PdmI GAANNNNTTC 2 cut(s) 606, 665
PfeI GAWTC 2 cut(s) 247, 404
PinAI ACCGGT 1 cut(s) 379
PkrI GCNGC 4 cut(s) 223, 226, 229, 745
PleI GAGTC 4 cut(s) 31, 246, 317, 322
PpsI GAGTC 4 cut(s) 31, 246, 317, 322
Psp6I CCWGG 3 cut(s) 241, 611, 719
PspGI CCWGG 3 cut(s) 241, 611, 719
PspN4I GGNNCC 1 cut(s) 419
PstI CTGCAG 1 cut(s) 226
PvuII CAGCTG 2 cut(s) 227, 361
RsaI GTAC 2 cut(s) 98, 288
RsaNI GTAC 2 cut(s) 97, 287
SaqAI TTAA 5 cut(s) 44, 54, 212, 263, 575
SatI GCNGC 4 cut(s) 222, 225, 228, 744
Sau3AI GATC 5 cut(s) 121, 190, 197, 363, 555
SchI GAGTC 4 cut(s) 32, 247, 317, 323
ScrFI CCNGG 4 cut(s) 101, 243, 613, 721
SetI ASST 7 cut(s) 186, 229, 306, 363, 399, 423, 522
SfaNI GCATC 2 cut(s) 546, 640
SfcI CTRYAG 1 cut(s) 222
SgrAI CRCCGGYG 1 cut(s) 379
Sse9I AATT 4 cut(s) 46, 232, 297, 450
SsiI CCGC 2 cut(s) 342, 355
SspI AATATT 3 cut(s) 254, 269, 572
SspMI CTAG 1 cut(s) 596
StyD4I CCNGG 4 cut(s) 99, 241, 611, 719
TaaI ACNGT 3 cut(s) 175, 291, 769
TaiI ACGT 1 cut(s) 186
TaqI TCGA 2 cut(s) 200, 558
TaqII GACCGA 1 cut(s) 16
TasI AATT 4 cut(s) 46, 232, 297, 450
TatI WGTACW 1 cut(s) 286
TfiI GAWTC 2 cut(s) 247, 404
Tru1I TTAA 5 cut(s) 44, 54, 212, 263, 575
Tru9I TTAA 5 cut(s) 44, 54, 212, 263, 575
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 4 cut(s) 221, 224, 227, 743
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 6 cut(s) 17, 376, 500, 615, 727, 748
TspGWI ACGGA 1 cut(s) 488
XapI RAATTY 1 cut(s) 46
XbaI TCTAGA 1 cut(s) 595
XmnI GAANNNNTTC 2 cut(s) 606, 665
XspI CTAG 1 cut(s) 596
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.