RchiOBHm_Chr3g0462701

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0008870
Physical Location & Seq
Forward (+)
10335377 .. 10336765
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42904

Sequence Viewer

Length: 1389 bp
ATGCAGAAGCTGCGAATTAAATATAAAGAGCGCTTGACCGAGTTGTACGTAAGAGAGGAGCGGATAAGACCGGAGATTTGCATTTATAGAGTTCCGGAGAAACTTCGAAAACTGAAGGAGGATGCCTACAATCCCCGCGCTGTCTCAATTGGACCTTTCCATCGAGGCAAAAGTAGCCTTGCACCAATGGAACACCATAAACTATTATACACGGCATCCTTTCTCGGTTCGTTTATTGCGAGTAGCGAAGCTACTGAAAAATACATGGATAGTTACATGGAACATCCTATTGCTCCTATACATGTTGATTGGCCGGTTAATAAATGCTACAATGAAGAGATCAAATGCGAAGAAGGCAGGGATAAGCTTACTGAATTGCTACAAGATGGCTGCTTCATATTGCAACTTTTCCTCAGCTTTGCCCAATTGATCAAGGATAGTTCAGACGAATACGAATCTGATCCATTAATAAACAATGCTTGGATGATCAGAGATCTTTGGCACGATCTAGCATTGCTTGAAAACCAAATCCCCTTCTTTGTCCTCGAAATTTTATATGACATTGTCAAGCCTTGTGTAATGAAAATGAACAACGGCAAAGCACCAGAGTCGGTCAGTAGTCTTGCTTTAAATTTCTTTAAGCCTATGCTGAGCCAAAACTCAAATATAGTGGAGCATTCGTACCCGGACTGCAAACATTTGCTTGATCTCTTGCACAAATCCTCCCTGCTCGCAGTTTCAGGAGATACTGCCTTCACAGTCTATGACGTCAGAGATCGGAGATCGACAATGGCTTTAAACCATGCTGCAGCTGCTAATTTGAGTCCAGGGAATCAATATTGGGGATTAAAATATTGCGCTGAAGAACTTGTACAGTCCGGAATTGAGCTTCGTAAAGAGTCAGGGGACTCTCTGGTGAACATAACCACCACAAGCGACCGCCAGCTGATCATCAACATCCCACCGCTGTTCATTGACGAGGTAAGGGATTCACTCTTCAGGAACCTGATTGCCTACGAACAAAGCAGTATCAAAATTAGTCATCATGTCACATCTTATGTTATCCTCATGAAAAGTCTTGTCCGTTCTCCACGAGATGTCAAGCTTCTTAGGAAAAAAGGCATCATATCTCAGTATTGGATCGAAGACCAAGAATATTTAAGTTGCTTCGTAAGTTTTCTAGATGAAGTTTTTCCCAGGGACTTCTATTTCAGTTCTTTGTGTGGCCAAGTGGATGCCTACGCGAATAAGTTCTGGTTTCGTAGAAAGATGAGCGCTCTTTATCGCACTTATTTCTCAACAGCCTGGAGTATGACATCATTCATTGCTGCCATTTGCCTTTTCATTCTCACAGTCTTACAAACATACTTTACCATCAACCCTCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

462

Amino Acids

53.64

Weight (kDa)

6.65

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 28 - 450 1.3e-92 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 771
AccBSI CCGCTC 1 cut(s) 61
AccII CGCG 2 cut(s) 138, 1244
AccIII TCCGGA 2 cut(s) 94, 878
AciI CCGC 4 cut(s) 61, 136, 940, 965
AclWI GGATC 2 cut(s) 455, 1148
AcoI YGGCCR 2 cut(s) 311, 1225
AcsI RAATTY 2 cut(s) 549, 631
AcuI CTGAAG 3 cut(s) 134, 882, 982
AcyI GRCGYC 1 cut(s) 768
AfaI GTAC 3 cut(s) 47, 683, 873
AfeI AGCGCT 2 cut(s) 32, 1276
AflIII ACRYGT 1 cut(s) 301
AgsI TTSAA 1 cut(s) 521
AjnI CCWGG 3 cut(s) 826, 1196, 1304
AluBI AGCT 8 cut(s) 10, 251, 367, 417, 812, 889, 946, 1105
AluI AGCT 8 cut(s) 10, 251, 367, 417, 812, 889, 946, 1105
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 2 cut(s) 455, 1148
AlwNI CAGNNNCTG 1 cut(s) 10
Aor13HI TCCGGA 2 cut(s) 94, 878
Aor51HI AGCGCT 2 cut(s) 32, 1276
AoxI GGCC 2 cut(s) 311, 1225
ApeKI GCWGC 6 cut(s) 10, 390, 806, 809, 812, 1328
ApoI RAATTY 2 cut(s) 549, 631
ArsI GACNNNNNNTTYG 2 cut(s) 60, 92
AseI ATTAAT 1 cut(s) 467
Asp700I GAANNNNTTC 2 cut(s) 1191, 1250
AspLEI GCGC 4 cut(s) 33, 140, 860, 1277
AspS9I GGNCC 1 cut(s) 152
AsuC2I CCSGG 1 cut(s) 686
AsuHPI GGTGA 1 cut(s) 928
AsuII TTCGAA 1 cut(s) 106
AvaII GGWCC 1 cut(s) 152
BalI TGGCCA 1 cut(s) 1227
BarI GAAGNNNNNNTAC 2 cut(s) 855, 887
BauI CACGAG 1 cut(s) 1092
BbsI GAAGAC 1 cut(s) 1152
BbvCI CCTCAGC 1 cut(s) 413
BbvI GCAGC 5 cut(s) 377, 793, 799, 821, 1315
BccI CCATC 3 cut(s) 168, 380, 1382
BceAI ACGGC 2 cut(s) 228, 610
BcgI CGANNNNNNTGC 2 cut(s) 591, 625
BciT130I CCWGG 3 cut(s) 828, 1198, 1306
BclI TGATCA 3 cut(s) 429, 486, 948
BcnI CCSGG 1 cut(s) 686
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 2 cut(s) 509, 1181
BfmI CTRYAG 1 cut(s) 807
BfoI RGCGCY 2 cut(s) 34, 1278
BglII AGATCT 1 cut(s) 493
BisI GCNGC 6 cut(s) 11, 391, 807, 810, 813, 1329
BlpI GCTNAGC 1 cut(s) 650
BlsI GCNGC 6 cut(s) 12, 392, 808, 811, 814, 1330
Bme1390I CCNGG 4 cut(s) 686, 828, 1198, 1306
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 1004
BmrFI CCNGG 4 cut(s) 686, 828, 1198, 1306
BmsI GCATC 4 cut(s) 112, 224, 1131, 1225
BpiI GAAGAC 1 cut(s) 1152
BpmI CTGGAG 1 cut(s) 1327
Bpu10I CCTNAGC 1 cut(s) 413
Bpu1102I GCTNAGC 1 cut(s) 650
Bpu14I TTCGAA 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 686
BsaAI YACGTR 1 cut(s) 49
BsaHI GRCGYC 1 cut(s) 768
BsaJI CCNNGG 3 cut(s) 827, 1196, 1197
BsaWI WCCGGW 3 cut(s) 70, 94, 878
BsaXI ACNNNNNCTCC 4 cut(s) 665, 695, 707, 737
Bse118I RCCGGY 1 cut(s) 313
Bse3DI GCAATG 2 cut(s) 512, 1323
BseAI TCCGGA 2 cut(s) 94, 878
BseBI CCWGG 3 cut(s) 828, 1198, 1306
BseDI CCNNGG 3 cut(s) 827, 1196, 1197
BseGI GGATG 6 cut(s) 127, 215, 283, 489, 957, 1240
BseMI GCAATG 2 cut(s) 512, 1323
BseMII CTCAG 3 cut(s) 427, 641, 1145
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 5 cut(s) 377, 793, 799, 821, 1315
Bsh1236I CGCG 2 cut(s) 138, 1244
Bsh1285I CGRYCG 1 cut(s) 940
BshFI GGCC 2 cut(s) 313, 1227
BsiEI CGRYCG 1 cut(s) 940
BsiSI CCGG 5 cut(s) 71, 95, 314, 686, 879
BslFI GGGAC 2 cut(s) 920, 1214
BsmAI GTCTC 1 cut(s) 148
BsmFI GGGAC 2 cut(s) 920, 1214
BsmI GAATGC 1 cut(s) 676
BsnI GGCC 2 cut(s) 313, 1227
Bsp119I TTCGAA 1 cut(s) 106
Bsp13I TCCGGA 2 cut(s) 94, 878
Bsp1407I TGTACA 1 cut(s) 871
Bsp1720I GCTNAGC 1 cut(s) 650
BspACI CCGC 4 cut(s) 61, 136, 940, 965
BspANI GGCC 2 cut(s) 313, 1227
BspCNI CTCAG 3 cut(s) 426, 642, 1144
BspEI TCCGGA 2 cut(s) 94, 878
BspFNI CGCG 2 cut(s) 138, 1244
BspHI TCATGA 1 cut(s) 1068
BspLI GGNNCC 1 cut(s) 1004
BspMAI CTGCAG 1 cut(s) 811
BspPI GGATC 2 cut(s) 455, 1148
BspT104I TTCGAA 1 cut(s) 106
BsrBI CCGCTC 1 cut(s) 61
BsrDI GCAATG 2 cut(s) 512, 1323
BsrFI RCCGGY 1 cut(s) 313
BsrGI TGTACA 1 cut(s) 871
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 3 cut(s) 827, 1196, 1197
BssNI GRCGYC 1 cut(s) 768
BssSI CACGAG 1 cut(s) 1092
Bst2BI CACGAG 1 cut(s) 1092
Bst2UI CCWGG 3 cut(s) 828, 1198, 1306
Bst4CI ACNGT 3 cut(s) 760, 876, 1354
Bst6I CTCTTC 2 cut(s) 330, 1001
BstACI GRCGYC 1 cut(s) 768
BstAPI GCANNNNNTGC 1 cut(s) 10
BstAUI TGTACA 1 cut(s) 871
BstBAI YACGTR 1 cut(s) 49
BstBI TTCGAA 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 732, 944
BstDEI CTNAG 4 cut(s) 413, 650, 1109, 1131
BstF5I GGATG 6 cut(s) 127, 215, 283, 489, 957, 1240
BstFNI CGCG 2 cut(s) 138, 1244
BstH2I RGCGCY 2 cut(s) 34, 1278
BstHHI GCGC 4 cut(s) 33, 140, 860, 1277
BstMAI GTCTC 1 cut(s) 148
BstMCI CGRYCG 1 cut(s) 940
BstMWI GCNNNNNNNGC 4 cut(s) 10, 174, 354, 812
BstNI CCWGG 3 cut(s) 828, 1198, 1306
BstNSI RCATGY 1 cut(s) 305
BstSCI CCNGG 4 cut(s) 684, 826, 1196, 1304
BstSFI CTRYAG 1 cut(s) 807
BstSNI TACGTA 1 cut(s) 49
BstUI CGCG 2 cut(s) 138, 1244
BstV1I GCAGC 5 cut(s) 377, 793, 799, 821, 1315
BstV2I GAAGAC 1 cut(s) 1152
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
BsuRI GGCC 2 cut(s) 313, 1227
BtsCI GGATG 6 cut(s) 127, 215, 283, 489, 957, 1240
Cac8I GCNNGC 2 cut(s) 732, 944
CaiI CAGNNNCTG 1 cut(s) 10
CciI TCATGA 1 cut(s) 1068
CfoI GCGC 4 cut(s) 33, 140, 860, 1277
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 3 cut(s) 46, 682, 872
CspCI CAANNNNNGTGG 2 cut(s) 651, 686
CviAII CATG 6 cut(s) 265, 277, 302, 803, 1046, 1069
CviQI GTAC 3 cut(s) 46, 682, 872
DdeI CTNAG 4 cut(s) 413, 650, 1109, 1131
DraI TTTAAA 2 cut(s) 630, 798
EaeI YGGCCR 2 cut(s) 311, 1225
Eam1104I CTCTTC 2 cut(s) 330, 1001
EarI CTCTTC 2 cut(s) 330, 1001
Eco105I TACGTA 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 152
Eco47III AGCGCT 2 cut(s) 32, 1276
Eco57I CTGAAG 3 cut(s) 134, 882, 982
EcoRII CCWGG 3 cut(s) 826, 1196, 1304
FaeI CATG 6 cut(s) 268, 280, 305, 806, 1049, 1072
FaqI GGGAC 2 cut(s) 920, 1214
FatI CATG 6 cut(s) 264, 276, 301, 802, 1045, 1068
FauI CCCGC 1 cut(s) 143
FbaI TGATCA 3 cut(s) 429, 486, 948
Fnu4HI GCNGC 6 cut(s) 11, 391, 807, 810, 813, 1329
FokI GGATG 6 cut(s) 134, 202, 270, 496, 944, 1247
Fsp4HI GCNGC 6 cut(s) 11, 391, 807, 810, 813, 1329
FspBI CTAG 2 cut(s) 509, 1181
GlaI GCGC 4 cut(s) 32, 139, 859, 1276
GluI GCNGC 6 cut(s) 11, 391, 807, 810, 813, 1329
GsuI CTGGAG 1 cut(s) 1327
HaeII RGCGCY 2 cut(s) 34, 1278
HaeIII GGCC 2 cut(s) 313, 1227
HapII CCGG 5 cut(s) 71, 95, 314, 686, 879
HhaI GCGC 4 cut(s) 33, 140, 860, 1277
Hin1I GRCGYC 1 cut(s) 768
Hin1II CATG 6 cut(s) 268, 280, 305, 806, 1049, 1072
Hin6I GCGC 4 cut(s) 31, 138, 858, 1275
HinP1I GCGC 4 cut(s) 31, 138, 858, 1275
HindIII AAGCTT 2 cut(s) 365, 1103
HinfI GANTC 7 cut(s) 455, 608, 823, 832, 899, 908, 989
HpaII CCGG 5 cut(s) 71, 95, 314, 686, 879
HphI GGTGA 1 cut(s) 928
Hpy166II GTNNAC 1 cut(s) 919
Hpy188I TCNGA 5 cut(s) 445, 460, 491, 773, 780
Hpy188III TCNNGA 6 cut(s) 95, 741, 879, 1000, 1069, 1181
Hpy8I GTNNAC 1 cut(s) 919
HpyAV CCTTC 4 cut(s) 109, 347, 544, 763
HpyCH4III ACNGT 3 cut(s) 760, 876, 1354
HpyCH4IV ACGT 2 cut(s) 48, 768
HpyCH4V TGCA 7 cut(s) 4, 81, 182, 403, 693, 715, 809
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 174, 354, 812
HpyF3I CTNAG 4 cut(s) 413, 650, 1109, 1131
HpySE526I ACGT 2 cut(s) 48, 768
Hsp92I GRCGYC 1 cut(s) 768
Hsp92II CATG 6 cut(s) 268, 280, 305, 806, 1049, 1072
HspAI GCGC 4 cut(s) 31, 138, 858, 1275
Kpn2I TCCGGA 2 cut(s) 94, 878
Ksp22I TGATCA 3 cut(s) 429, 486, 948
LmnI GCTCC 3 cut(s) 58, 298, 673
Lsp1109I GCAGC 5 cut(s) 377, 793, 799, 821, 1315
LweI GCATC 4 cut(s) 112, 224, 1131, 1225
MaeI CTAG 2 cut(s) 509, 1181
MaeII ACGT 2 cut(s) 48, 768
MaeIII GTNAC 2 cut(s) 272, 1048
MbiI CCGCTC 1 cut(s) 61
MboII GAAGA 5 cut(s) 347, 362, 875, 988, 1157
MfeI CAATTG 2 cut(s) 147, 425
MflI RGATCY 1 cut(s) 493
MlsI TGGCCA 1 cut(s) 1227
MluCI AATT 9 cut(s) 15, 147, 374, 425, 549, 631, 817, 882, 1035
MluNI TGGCCA 1 cut(s) 1227
MlyI GAGTC 4 cut(s) 617, 832, 902, 908
MnlI CCTC 8 cut(s) 49, 112, 158, 422, 554, 733, 973, 1076
Mox20I TGGCCA 1 cut(s) 1227
MroI TCCGGA 2 cut(s) 94, 878
MroXI GAANNNNTTC 2 cut(s) 1191, 1250
MscI TGGCCA 1 cut(s) 1227
MseI TTAA 8 cut(s) 18, 318, 467, 629, 639, 797, 848, 1160
Msp20I TGGCCA 1 cut(s) 1227
MspA1I CMGCKG 3 cut(s) 812, 946, 967
MspI CCGG 5 cut(s) 71, 95, 314, 686, 879
MspR9I CCNGG 4 cut(s) 686, 828, 1198, 1306
MunI CAATTG 2 cut(s) 147, 425
Mva1269I GAATGC 1 cut(s) 676
MvaI CCWGG 3 cut(s) 828, 1198, 1306
MvnI CGCG 2 cut(s) 138, 1244
MwoI GCNNNNNNNGC 4 cut(s) 10, 174, 354, 812
NciI CCSGG 1 cut(s) 686
NlaIII CATG 6 cut(s) 268, 280, 305, 806, 1049, 1072
NlaIV GGNNCC 1 cut(s) 1004
NmuCI GTSAC 1 cut(s) 1048
NspI RCATGY 1 cut(s) 305
NspV TTCGAA 1 cut(s) 106
PagI TCATGA 1 cut(s) 1068
PasI CCCWGGG 1 cut(s) 1197
PciI ACATGT 1 cut(s) 301
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PctI GAATGC 1 cut(s) 676
PdmI GAANNNNTTC 2 cut(s) 1191, 1250
PfeI GAWTC 3 cut(s) 455, 832, 989
PflFI GACNNNGTC 1 cut(s) 563
PkrI GCNGC 6 cut(s) 12, 392, 808, 811, 814, 1330
PleI GAGTC 4 cut(s) 616, 831, 902, 907
PpsI GAGTC 4 cut(s) 616, 831, 902, 907
Ppu21I YACGTR 1 cut(s) 49
PscI ACATGT 1 cut(s) 301
PshBI ATTAAT 1 cut(s) 467
Psp6I CCWGG 3 cut(s) 826, 1196, 1304
PspGI CCWGG 3 cut(s) 826, 1196, 1304
PspN4I GGNNCC 1 cut(s) 1004
PspPI GGNCC 1 cut(s) 152
PstI CTGCAG 1 cut(s) 811
PstNI CAGNNNCTG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 493
PsyI GACNNNGTC 1 cut(s) 563
PvuII CAGCTG 2 cut(s) 812, 946
RsaI GTAC 3 cut(s) 47, 683, 873
RsaNI GTAC 3 cut(s) 46, 682, 872
SaqAI TTAA 8 cut(s) 18, 318, 467, 629, 639, 797, 848, 1160
SatI GCNGC 6 cut(s) 11, 391, 807, 810, 813, 1329
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 4 cut(s) 617, 832, 902, 908
ScrFI CCNGG 4 cut(s) 686, 828, 1198, 1306
SfaNI GCATC 4 cut(s) 112, 224, 1131, 1225
SfcI CTRYAG 1 cut(s) 807
SfuI TTCGAA 1 cut(s) 106
SinI GGWCC 1 cut(s) 152
SnaBI TACGTA 1 cut(s) 49
Sse9I AATT 9 cut(s) 15, 147, 374, 425, 549, 631, 817, 882, 1035
SsiI CCGC 4 cut(s) 61, 136, 940, 965
SspI AATATT 3 cut(s) 839, 854, 1157
SspMI CTAG 2 cut(s) 509, 1181
StyD4I CCNGG 4 cut(s) 684, 826, 1196, 1304
TaaI ACNGT 3 cut(s) 760, 876, 1354
TaiI ACGT 2 cut(s) 51, 771
TaqI TCGA 5 cut(s) 106, 163, 546, 785, 1143
TaqII GACCGA 2 cut(s) 53, 601
TasI AATT 9 cut(s) 15, 147, 374, 425, 549, 631, 817, 882, 1035
TatI WGTACW 1 cut(s) 871
TfiI GAWTC 3 cut(s) 455, 832, 989
Tru1I TTAA 8 cut(s) 18, 318, 467, 629, 639, 797, 848, 1160
Tru9I TTAA 8 cut(s) 18, 318, 467, 629, 639, 797, 848, 1160
TseFI GTSAC 1 cut(s) 1048
TseI GCWGC 6 cut(s) 10, 390, 806, 809, 812, 1328
Tsp45I GTSAC 1 cut(s) 1048
TspDTI ATGAA 9 cut(s) 348, 385, 596, 602, 961, 1085, 1200, 1312, 1333
TspGWI ACGGA 1 cut(s) 1073
Tth111I GACNNNGTC 1 cut(s) 563
VpaK11BI GGWCC 1 cut(s) 152
VspI ATTAAT 1 cut(s) 467
XapI RAATTY 2 cut(s) 549, 631
XbaI TCTAGA 1 cut(s) 1180
XceI RCATGY 1 cut(s) 305
XmnI GAANNNNTTC 2 cut(s) 1191, 1250
XspI CTAG 2 cut(s) 509, 1181
ZraI GACGTC 1 cut(s) 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.