Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000766.1

Orthogroup ID

OG0008870

Physical Location & Seq

Genomic Coordinates Forward (+)

5417 .. 8149

Gene Structure 2733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000766.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

atggagcagctgggggaggtagggaggtcgtggagagagccggacggaatgagcctacggggaggatctggcagagggagaggtgacgtgtgtgaagaaaccccgacggagggggtggagaagctggaagtggaggaggagtgggagcacgaagctctaacccaagtttcacagatactgaagcggatgaaggtggatatcgacaataagctcgacagcatccccgtgtcgcgtctcaacacagagaaagagataagagtggagactcgcatctgtagagttcctgagaaacttcgagaactgaaggaggatgcctgcaatccccgagttgtttcaattggacctttccattcctgtaaggattaccttgcaccaatgtcaagacataaatactattacatgtcccttctcattcacagcaaagatgctgaaaactgcttggatgaatgtatctgcgctattactgattttgacgttgtgattcgtcaatgctacgtcgaagatatcagtgtttcaaatgatgagcttagactaatgatgttagttgatggctgcttcatattggaacttcttctcaggttagcacctaacttggagtatataatgccacaagaatacgaatctgatccattaataaacaatgcttggatgatcagagctctttggcacgatctagcattgcttgaaaaccagattcccttctttattctggaaaagttatacgatattatcaagcctcgtttaatgagcaagtgcagagcaccagattcggtcactagtcttgttttaagtttctttaagcctatgatgagccaaaactcaaatatagaggagcattcgtacccggactgcaaacatttgcttgatctcttgcacaaatgccccctgcttgcagcttctggagtagatactgccttcacagcctacgactccggaattgagctttttaaagagtcagaggctgactctttggtgaacataaccgccgcgagacacggccagctgatcaaaatcccaccgctgttcattgatgaggtaagggattcactcttcaggaacttgattgcctacgagcaaagcagtattaaaattagtcatcatgttacatcttatgttatcctcatgaaaagtcttatacgttctccacgagatgtaaagcttcttaagaaaaaaggcatcatatctcagtattggattgacgaccaagaatattcaacttacttcagaagtcttctagatgaagtttttcctacggacttctatttcggttctctgtgttgccaagtggatgcctacgcgaataagttctggtttcgtagaaagatgagcgctctttatcacacttatttctcaacagcatggagtatgacatcattcattgctgccatttgccttttcattctcacggtcttacaaacatactttaccatcaacccagctcgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

481

Amino Acids

55.61

Weight (kDa)

5.38

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11220
prunus_persica	Prupe.6G273900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0462701 RchiOBHm_Chr3g0462721
rosa_laevigata	RLG00000024837
rosa_multiflora	Rmu_co8146084.1_g000001 Rmu_co8365749.1_g000001 Rmu_sc0000766.1_g000001 Rmu_sc0000766.1_g000002 Rmu_sc0004225.1_g000001 Rmu_sc0011057.1_g000006
rosa_roxburghii	Rroxscaffold_6G00417250
rosa_rugosa	Rorug03G0058800
rosa_samantha	Rh3AG116700 Rh3AG116800 Rh3BG120300 Rh3BG120400 Rh3CG123400 Rh3CG123500 Rh3DG122200 Rh5DG446700
rosa_wichuraiana	Rw3G009880 Rw3G009890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	232, 989, 1298
AccIII	TCCGGA	1 cut(s)	932
AciI	CCGC	4 cut(s)	184, 984, 987, 1019
AclWI	GGATC	2 cut(s)	73, 620
AcoI	YGGCCR	1 cut(s)	997
AcuI	CTGAAG	4 cut(s)	200, 323, 1036, 1207
AfaI	GTAC	1 cut(s)	842
AfeI	AGCGCT	1 cut(s)	1330
AfiI	CCNNNNNNNGG	2 cut(s)	109, 110
AflII	CTTAAG	1 cut(s)	1163
AflIII	ACRYGT	2 cut(s)	87, 399
AgsI	TTSAA	4 cut(s)	336, 516, 686, 1215
AhlI	ACTAGT	1 cut(s)	776
AjiI	CACGTC	1 cut(s)	88
Alw21I	GWGCWC	3 cut(s)	150, 661, 763
Alw26I	GTCTC	3 cut(s)	239, 257, 985
AlwI	GGATC	2 cut(s)	73, 620
AlwNI	CAGNNNCTG	3 cut(s)	178, 899, 962
Ama87I	CYCGRG	1 cut(s)	324
Aor13HI	TCCGGA	1 cut(s)	932
Aor51HI	AGCGCT	1 cut(s)	1330
AoxI	GGCC	1 cut(s)	997
ApeKI	GCWGC	4 cut(s)	7, 552, 893, 1382
ArsI	GACNNNNNNTTYG	2 cut(s)	1247, 1279
AseI	ATTAAT	1 cut(s)	632
Asp700I	GAANNNNTTC	3 cut(s)	570, 1245, 1304
AspLEI	GCGC	2 cut(s)	458, 1331
AspS9I	GGNCC	1 cut(s)	341
AsuC2I	CCSGG	1 cut(s)	845
AsuHPI	GGTGA	2 cut(s)	95, 985
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	661
BauI	CACGAG	1 cut(s)	1146
BbsI	GAAGAC	1 cut(s)	1223
Bbv12I	GWGCWC	3 cut(s)	150, 661, 763
BbvI	GCAGC	4 cut(s)	19, 539, 905, 1369
BccI	CCATC	2 cut(s)	542, 1436
BceAI	ACGGC	1 cut(s)	1012
BcgI	CGANNNNNNTGC	2 cut(s)	750, 784
BclI	TGATCA	2 cut(s)	651, 1005
BcnI	CCSGG	1 cut(s)	845
BcoDI	GTCTC	3 cut(s)	239, 257, 985
BcuI	ACTAGT	1 cut(s)	776
BfaI	CTAG	3 cut(s)	674, 777, 1235
BfmI	CTRYAG	1 cut(s)	274
BfoI	RGCGCY	1 cut(s)	1332
BfrI	CTTAAG	1 cut(s)	1163
BisI	GCNGC	5 cut(s)	8, 553, 894, 987, 1383
BlsI	GCNGC	5 cut(s)	9, 554, 895, 988, 1384
Bme1390I	CCNGG	1 cut(s)	845
Bme18I	GGWCC	1 cut(s)	341
BmeT110I	CYCGRG	1 cut(s)	324
BmgBI	CACGTC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	341
BmrFI	CCNGG	1 cut(s)	845
BmsI	GCATC	6 cut(s)	228, 279, 301, 415, 1185, 1279
BpiI	GAAGAC	1 cut(s)	1223
BplI	GAGNNNNNCTC	2 cut(s)	950, 982
BpmI	CTGGAG	1 cut(s)	921
BpuMI	CCSGG	1 cut(s)	845
BsaBI	GATNNNNATC	1 cut(s)	1010
BsaWI	WCCGGW	1 cut(s)	932
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 824, 854
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 110
Bse3DI	GCAATG	2 cut(s)	677, 1377
Bse8I	GATNNNNATC	1 cut(s)	1010
BseAI	TCCGGA	1 cut(s)	932
BseGI	GGATG	6 cut(s)	192, 219, 316, 448, 654, 1294
BseJI	GATNNNNATC	1 cut(s)	1010
BseLI	CCNNNNNNNGG	2 cut(s)	109, 110
BseMI	GCAATG	2 cut(s)	677, 1377
BseMII	CTCAG	3 cut(s)	276, 589, 1199
BseRI	GAGGAG	3 cut(s)	149, 152, 845
BseXI	GCAGC	4 cut(s)	19, 539, 905, 1369
BseYI	CCCAGC	2 cut(s)	10, 1435
BsgI	GTGCAG	1 cut(s)	775
Bsh1236I	CGCG	3 cut(s)	232, 989, 1298
BshFI	GGCC	1 cut(s)	999
BsiHKAI	GWGCWC	3 cut(s)	150, 661, 763
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	3 cut(s)	41, 845, 933
BslFI	GGGAC	1 cut(s)	388
BslI	CCNNNNNNNGG	2 cut(s)	109, 110
BsmAI	GTCTC	3 cut(s)	239, 257, 985
BsmBI	CGTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	388
BsmI	GAATGC	1 cut(s)	835
BsnI	GGCC	1 cut(s)	999
BsoBI	CYCGRG	1 cut(s)	324
Bsp1286I	GDGCHC	3 cut(s)	150, 661, 763
Bsp13I	TCCGGA	1 cut(s)	932
Bsp143I	GATC	6 cut(s)	65, 625, 651, 670, 865, 1005
BspACI	CCGC	4 cut(s)	184, 984, 987, 1019
BspANI	GGCC	1 cut(s)	999
BspCNI	CTCAG	3 cut(s)	277, 588, 1198
BspEI	TCCGGA	1 cut(s)	932
BspFNI	CGCG	3 cut(s)	232, 989, 1298
BspHI	TCATGA	1 cut(s)	1122
BspPI	GGATC	2 cut(s)	73, 620
BspTI	CTTAAG	1 cut(s)	1163
BsrDI	GCAATG	2 cut(s)	677, 1377
BssMI	GATC	6 cut(s)	65, 625, 651, 670, 865, 1005
BssSI	CACGAG	1 cut(s)	1146
Bst2BI	CACGAG	1 cut(s)	1146
Bst4CI	ACNGT	1 cut(s)	1408
Bst6I	CTCTTC	1 cut(s)	1055
BstAFI	CTTAAG	1 cut(s)	1163
BstC8I	GCNNGC	4 cut(s)	316, 891, 1001, 1441
BstDEI	CTNAG	4 cut(s)	285, 527, 575, 1185
BstF5I	GGATG	6 cut(s)	192, 219, 316, 448, 654, 1294
BstFNI	CGCG	3 cut(s)	232, 989, 1298
BstH2I	RGCGCY	1 cut(s)	1332
BstHHI	GCGC	2 cut(s)	458, 1331
BstKTI	GATC	6 cut(s)	68, 628, 654, 673, 868, 1008
BstMAI	GTCTC	3 cut(s)	239, 257, 985
BstMBI	GATC	6 cut(s)	65, 625, 651, 670, 865, 1005
BstMWI	GCNNNNNNNGC	1 cut(s)	920
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	843
BstSFI	CTRYAG	1 cut(s)	274
BstUI	CGCG	3 cut(s)	232, 989, 1298
BstV1I	GCAGC	4 cut(s)	19, 539, 905, 1369
BstV2I	GAAGAC	1 cut(s)	1223
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	999
BtrI	CACGTC	1 cut(s)	88
BtsCI	GGATG	6 cut(s)	192, 219, 316, 448, 654, 1294
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	4 cut(s)	316, 891, 1001, 1441
CaiI	CAGNNNCTG	3 cut(s)	178, 899, 962
CciI	TCATGA	1 cut(s)	1122
CfoI	GCGC	2 cut(s)	458, 1331
Cfr13I	GGNCC	1 cut(s)	341
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	841
CviAII	CATG	4 cut(s)	400, 1100, 1123, 1359
CviQI	GTAC	1 cut(s)	841
DdeI	CTNAG	4 cut(s)	285, 527, 575, 1185
DpnI	GATC	6 cut(s)	67, 627, 653, 672, 867, 1007
DpnII	GATC	6 cut(s)	65, 625, 651, 670, 865, 1005
DraI	TTTAAA	1 cut(s)	949
EaeI	YGGCCR	1 cut(s)	997
Eam1104I	CTCTTC	1 cut(s)	1055
EarI	CTCTTC	1 cut(s)	1055
Ecl136II	GAGCTC	1 cut(s)	659
Eco24I	GRGCYC	1 cut(s)	661
Eco32I	GATATC	2 cut(s)	199, 505
Eco47I	GGWCC	1 cut(s)	341
Eco47III	AGCGCT	1 cut(s)	1330
Eco53kI	GAGCTC	1 cut(s)	659
Eco57I	CTGAAG	4 cut(s)	200, 323, 1036, 1207
Eco88I	CYCGRG	1 cut(s)	324
EcoICRI	GAGCTC	1 cut(s)	659
EcoRV	GATATC	2 cut(s)	199, 505
EcoT38I	GRGCYC	1 cut(s)	661
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	4 cut(s)	403, 1103, 1126, 1362
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	4 cut(s)	399, 1099, 1122, 1358
FbaI	TGATCA	2 cut(s)	651, 1005
Fnu4HI	GCNGC	5 cut(s)	8, 553, 894, 987, 1383
FokI	GGATG	6 cut(s)	199, 206, 323, 455, 661, 1301
FriOI	GRGCYC	1 cut(s)	661
Fsp4HI	GCNGC	5 cut(s)	8, 553, 894, 987, 1383
FspBI	CTAG	3 cut(s)	674, 777, 1235
GlaI	GCGC	2 cut(s)	457, 1330
GluI	GCNGC	5 cut(s)	8, 553, 894, 987, 1383
GsaI	CCCAGC	2 cut(s)	14, 1439
GsuI	CTGGAG	1 cut(s)	921
HaeII	RGCGCY	1 cut(s)	1332
HaeIII	GGCC	1 cut(s)	999
HapII	CCGG	3 cut(s)	41, 845, 933
HgaI	GACGC	1 cut(s)	221
HhaI	GCGC	2 cut(s)	458, 1331
Hin1II	CATG	4 cut(s)	403, 1103, 1126, 1362
Hin6I	GCGC	2 cut(s)	456, 1329
HinP1I	GCGC	2 cut(s)	456, 1329
HindIII	AAGCTT	1 cut(s)	1157
HinfI	GANTC	9 cut(s)	265, 481, 620, 694, 767, 929, 953, 965, 1043
HpaII	CCGG	3 cut(s)	41, 845, 933
HphI	GGTGA	2 cut(s)	95, 985
Hpy166II	GTNNAC	1 cut(s)	976
Hpy188I	TCNGA	4 cut(s)	625, 656, 958, 1226
Hpy188III	TCNNGA	9 cut(s)	284, 296, 381, 710, 900, 933, 1054, 1123, 1235
Hpy8I	GTNNAC	1 cut(s)	976
Hpy99I	CGWCG	2 cut(s)	109, 500
HpyAV	CCTTC	5 cut(s)	184, 298, 416, 709, 925
HpyCH4III	ACNGT	1 cut(s)	1408
HpyCH4IV	ACGT	4 cut(s)	87, 474, 495, 1138
HpyCH4V	TGCA	6 cut(s)	318, 371, 756, 852, 874, 893
HpyF10VI	GCNNNNNNNGC	1 cut(s)	920
HpyF3I	CTNAG	4 cut(s)	285, 527, 575, 1185
HpySE526I	ACGT	4 cut(s)	87, 474, 495, 1138
Hsp92II	CATG	4 cut(s)	403, 1103, 1126, 1362
HspAI	GCGC	2 cut(s)	456, 1329
Kpn2I	TCCGGA	1 cut(s)	932
Ksp22I	TGATCA	2 cut(s)	651, 1005
Kzo9I	GATC	6 cut(s)	65, 625, 651, 670, 865, 1005
LmnI	GCTCC	3 cut(s)	4, 145, 832
Lsp1109I	GCAGC	4 cut(s)	19, 539, 905, 1369
LweI	GCATC	6 cut(s)	228, 279, 301, 415, 1185, 1279
MaeI	CTAG	3 cut(s)	674, 777, 1235
MaeII	ACGT	4 cut(s)	87, 474, 495, 1138
MaeIII	GTNAC	3 cut(s)	83, 772, 1102
MalI	GATC	6 cut(s)	67, 627, 653, 672, 867, 1007
MboI	GATC	6 cut(s)	65, 625, 651, 670, 865, 1005
MboII	GAAGA	5 cut(s)	107, 512, 563, 1042, 1223
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	3 cut(s)	150, 661, 763
MluCI	AATT	3 cut(s)	336, 936, 1089
MlyI	GAGTC	4 cut(s)	259, 923, 959, 962
MroI	TCCGGA	1 cut(s)	932
MroXI	GAANNNNTTC	3 cut(s)	570, 1245, 1304
MseI	TTAA	7 cut(s)	632, 743, 788, 798, 948, 1086, 1164
MslI	CAYNNNNRTG	1 cut(s)	224
MspA1I	CMGCKG	3 cut(s)	10, 1003, 1021
MspCI	CTTAAG	1 cut(s)	1163
MspI	CCGG	3 cut(s)	41, 845, 933
MspR9I	CCNGG	1 cut(s)	845
MunI	CAATTG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	835
MvnI	CGCG	3 cut(s)	232, 989, 1298
MwoI	GCNNNNNNNGC	1 cut(s)	920
NciI	CCSGG	1 cut(s)	845
NdeII	GATC	6 cut(s)	65, 625, 651, 670, 865, 1005
NlaIII	CATG	4 cut(s)	403, 1103, 1126, 1362
NmuCI	GTSAC	2 cut(s)	83, 772
NspI	RCATGY	1 cut(s)	403
PagI	TCATGA	1 cut(s)	1122
PciI	ACATGT	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	1 cut(s)	1144
PctI	GAATGC	1 cut(s)	835
PdmI	GAANNNNTTC	3 cut(s)	570, 1245, 1304
PfeI	GAWTC	5 cut(s)	481, 620, 694, 767, 1043
PkrI	GCNGC	5 cut(s)	9, 554, 895, 988, 1384
PleI	GAGTC	4 cut(s)	259, 923, 959, 961
PpsI	GAGTC	4 cut(s)	259, 923, 959, 961
PscI	ACATGT	1 cut(s)	399
PshBI	ATTAAT	1 cut(s)	632
Psp124BI	GAGCTC	1 cut(s)	661
PspFI	CCCAGC	2 cut(s)	10, 1435
PspPI	GGNCC	1 cut(s)	341
PstNI	CAGNNNCTG	3 cut(s)	178, 899, 962
PsuI	RGATCY	1 cut(s)	65
PvuII	CAGCTG	2 cut(s)	10, 1003
RsaI	GTAC	1 cut(s)	842
RsaNI	GTAC	1 cut(s)	841
RseI	CAYNNNNRTG	1 cut(s)	224
SacI	GAGCTC	1 cut(s)	661
SaqAI	TTAA	7 cut(s)	632, 743, 788, 798, 948, 1086, 1164
SatI	GCNGC	5 cut(s)	8, 553, 894, 987, 1383
Sau3AI	GATC	6 cut(s)	65, 625, 651, 670, 865, 1005
Sau96I	GGNCC	1 cut(s)	341
SchI	GAGTC	4 cut(s)	259, 923, 959, 962
ScrFI	CCNGG	1 cut(s)	845
SduI	GDGCHC	3 cut(s)	150, 661, 763
SfaNI	GCATC	6 cut(s)	228, 279, 301, 415, 1185, 1279
SfcI	CTRYAG	1 cut(s)	274
SinI	GGWCC	1 cut(s)	341
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	1163
SmoI	CTYRAG	1 cut(s)	1163
SpeI	ACTAGT	1 cut(s)	776
Sse9I	AATT	3 cut(s)	336, 936, 1089
SsiI	CCGC	4 cut(s)	184, 984, 987, 1019
SspI	AATATT	1 cut(s)	1211
SspMI	CTAG	3 cut(s)	674, 777, 1235
SstI	GAGCTC	1 cut(s)	661
StyD4I	CCNGG	1 cut(s)	843
TaaI	ACNGT	1 cut(s)	1408
TaiI	ACGT	4 cut(s)	90, 477, 498, 1141
TaqI	TCGA	4 cut(s)	201, 213, 295, 498
TaqII	GACCGA	1 cut(s)	760
TasI	AATT	3 cut(s)	336, 936, 1089
TauI	GCSGC	1 cut(s)	989
TfiI	GAWTC	5 cut(s)	481, 620, 694, 767, 1043
Tru1I	TTAA	7 cut(s)	632, 743, 788, 798, 948, 1086, 1164
Tru9I	TTAA	7 cut(s)	632, 743, 788, 798, 948, 1086, 1164
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	2 cut(s)	83, 772
TseI	GCWGC	4 cut(s)	7, 552, 893, 1382
Tsp45I	GTSAC	2 cut(s)	83, 772
TspDTI	ATGAA	8 cut(s)	203, 459, 547, 1015, 1139, 1254, 1366, 1387
TspGWI	ACGGA	3 cut(s)	60, 122, 1268
TspRI	CASTG	1 cut(s)	514
Vha464I	CTTAAG	1 cut(s)	1163
VpaK11BI	GGWCC	1 cut(s)	341
VspI	ATTAAT	1 cut(s)	632
XbaI	TCTAGA	1 cut(s)	1234
XceI	RCATGY	1 cut(s)	403
XmnI	GAANNNNTTC	3 cut(s)	570, 1245, 1304
XspI	CTAG	3 cut(s)	674, 777, 1235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.