Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000766.1

Orthogroup ID

OG0008870

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1295

Gene Structure 1295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000766.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1295 bp

cggagaaacttcgaaaactgaaggaggatgcctacaatccccgcgctgtctcaattggacctttccatcgaggcaaaagtaaccttgcacaaatggaacaccataaactattttacacggcatcctttcttgcttggtttattgcgagtagcgaagctactgaaaaatacatggagagttacatcaaacatcctattggccctctacatgttgattggccggttaataaatgctacaatgaagagatcaaatgcgaagaaggcagggataagcttaatgaattgctacaagatggctgcttcatattgcaacttttcctcagctttgcccaactgatcaaggatagttcagacgaatacgaatctgatccattaataaacaatgcttggatgatcagagatctttggcacgatctagcattgcttgaaaaccaaatccccttctttgtcctcgaaattttatatgacattgtcaagccttgtgtaatgaaaatgaacaacggcaaagcaccagagtcggtcagtagtcttgctttaaatttctttaagcctatgctgagccaaaactcaaatatagtggagcattcgtacccggactgcaaacatttgcttgatctcttgcataaatcctccctgctcgcagtttcaggagatactgctttcacagtctatgacgtcagagatcggagatcgacaatggctttaaaccatgctgcagctgctaatttgagtccagggaatcaatattggggattaaaatattgcgctgaagaacttgtacagtccggaattgagcttcgtaaagagtcaggggactctctggtgaacataaccgccacaagcgaccgccagctgatcatcaacatcccaccggtgttcattgacgaggtaagggattcactcttcaggaacctgattgcctacgaacaaagcagtatcaaaattagtcatcatgtcacatcttatgttatcctcatgaaaagtcttgtccgttctccacgagatgtcaagcttcttaggaaaaaaggcatcatatctcagtattggatcgaagaccaagaatatttaagttgcttcgtaagttttctagatgaagtttttcccagggacttctatttcagttctttgtgtggccaagtggatgcctacgcgaataagttctggtttcgtagaaagatgagcgctctttatcgcacttatttctcaacagcctggagtatgacatcattcattgctgccatttgccttttcattctcacagtcttacaaacatactttaccatcaaccctcgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

430

Amino Acids

49.69

Weight (kDa)

6.34

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11220
prunus_persica	Prupe.6G273900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0462701 RchiOBHm_Chr3g0462721
rosa_laevigata	RLG00000024837
rosa_multiflora	Rmu_co8146084.1_g000001 Rmu_co8365749.1_g000001 Rmu_sc0000766.1_g000001 Rmu_sc0000766.1_g000002 Rmu_sc0004225.1_g000001 Rmu_sc0011057.1_g000006
rosa_roxburghii	Rroxscaffold_6G00417250
rosa_rugosa	Rorug03G0058800
rosa_samantha	Rh3AG116700 Rh3AG116800 Rh3BG120300 Rh3BG120400 Rh3CG123400 Rh3CG123500 Rh3DG122200 Rh5DG446700
rosa_wichuraiana	Rw3G009880 Rw3G009890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	677
AccII	CGCG	2 cut(s)	44, 1150
AccIII	TCCGGA	1 cut(s)	784
AciI	CCGC	3 cut(s)	42, 833, 846
AclWI	GGATC	2 cut(s)	361, 1054
AcoI	YGGCCR	2 cut(s)	217, 1131
AcsI	RAATTY	2 cut(s)	455, 537
AcuI	CTGAAG	3 cut(s)	40, 788, 888
AcyI	GRCGYC	1 cut(s)	674
AfaI	GTAC	2 cut(s)	589, 779
AfeI	AGCGCT	1 cut(s)	1182
AflIII	ACRYGT	1 cut(s)	207
AgeI	ACCGGT	1 cut(s)	870
AgsI	TTSAA	1 cut(s)	427
AjnI	CCWGG	3 cut(s)	732, 1102, 1210
AluBI	AGCT	7 cut(s)	157, 273, 323, 718, 795, 852, 1011
AluI	AGCT	7 cut(s)	157, 273, 323, 718, 795, 852, 1011
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	2 cut(s)	361, 1054
Aor13HI	TCCGGA	1 cut(s)	784
Aor51HI	AGCGCT	1 cut(s)	1182
AoxI	GGCC	3 cut(s)	198, 217, 1131
ApeKI	GCWGC	5 cut(s)	296, 712, 715, 718, 1234
ApoI	RAATTY	2 cut(s)	455, 537
AseI	ATTAAT	1 cut(s)	373
AsiGI	ACCGGT	1 cut(s)	870
Asp700I	GAANNNNTTC	2 cut(s)	1097, 1156
AspLEI	GCGC	3 cut(s)	46, 766, 1183
AspS9I	GGNCC	2 cut(s)	58, 199
AsuC2I	CCSGG	1 cut(s)	592
AsuHPI	GGTGA	1 cut(s)	834
AsuII	TTCGAA	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	58
BalI	TGGCCA	1 cut(s)	1133
BarI	GAAGNNNNNNTAC	2 cut(s)	761, 793
BauI	CACGAG	1 cut(s)	998
BbsI	GAAGAC	1 cut(s)	1058
BbvCI	CCTCAGC	1 cut(s)	319
BbvI	GCAGC	5 cut(s)	283, 699, 705, 727, 1221
BccI	CCATC	3 cut(s)	74, 286, 1288
BceAI	ACGGC	2 cut(s)	134, 516
BcgI	CGANNNNNNTGC	2 cut(s)	497, 531
BciT130I	CCWGG	3 cut(s)	734, 1104, 1212
BclI	TGATCA	3 cut(s)	335, 392, 854
BcnI	CCSGG	1 cut(s)	592
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	2 cut(s)	415, 1087
BfmI	CTRYAG	1 cut(s)	713
BfoI	RGCGCY	1 cut(s)	1184
BglII	AGATCT	1 cut(s)	399
BisI	GCNGC	5 cut(s)	297, 713, 716, 719, 1235
BlpI	GCTNAGC	1 cut(s)	556
BlsI	GCNGC	5 cut(s)	298, 714, 717, 720, 1236
Bme1390I	CCNGG	4 cut(s)	592, 734, 1104, 1212
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	2 cut(s)	58, 199
BmiI	GGNNCC	1 cut(s)	910
BmrFI	CCNGG	4 cut(s)	592, 734, 1104, 1212
BmsI	GCATC	4 cut(s)	18, 130, 1037, 1131
BpiI	GAAGAC	1 cut(s)	1058
BpmI	CTGGAG	1 cut(s)	1233
Bpu10I	CCTNAGC	1 cut(s)	319
Bpu1102I	GCTNAGC	1 cut(s)	556
Bpu14I	TTCGAA	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	592
BsaHI	GRCGYC	1 cut(s)	674
BsaJI	CCNNGG	3 cut(s)	733, 1102, 1103
BsaWI	WCCGGW	2 cut(s)	784, 870
BsaXI	ACNNNNNCTCC	2 cut(s)	571, 601
Bse118I	RCCGGY	2 cut(s)	219, 870
Bse3DI	GCAATG	2 cut(s)	418, 1229
BseAI	TCCGGA	1 cut(s)	784
BseBI	CCWGG	3 cut(s)	734, 1104, 1212
BseDI	CCNNGG	3 cut(s)	733, 1102, 1103
BseGI	GGATG	6 cut(s)	33, 121, 189, 395, 863, 1146
BseMI	GCAATG	2 cut(s)	418, 1229
BseMII	CTCAG	3 cut(s)	333, 547, 1051
BseXI	GCAGC	5 cut(s)	283, 699, 705, 727, 1221
Bsh1236I	CGCG	2 cut(s)	44, 1150
Bsh1285I	CGRYCG	1 cut(s)	846
BshFI	GGCC	3 cut(s)	200, 219, 1133
BshTI	ACCGGT	1 cut(s)	870
BsiEI	CGRYCG	1 cut(s)	846
BsiSI	CCGG	4 cut(s)	220, 592, 785, 871
BslFI	GGGAC	2 cut(s)	826, 1120
BsmAI	GTCTC	1 cut(s)	54
BsmFI	GGGAC	2 cut(s)	826, 1120
BsmI	GAATGC	1 cut(s)	582
BsnI	GGCC	3 cut(s)	200, 219, 1133
Bsp119I	TTCGAA	1 cut(s)	12
Bsp13I	TCCGGA	1 cut(s)	784
Bsp1407I	TGTACA	1 cut(s)	777
Bsp1720I	GCTNAGC	1 cut(s)	556
BspACI	CCGC	3 cut(s)	42, 833, 846
BspANI	GGCC	3 cut(s)	200, 219, 1133
BspCNI	CTCAG	3 cut(s)	332, 548, 1050
BspEI	TCCGGA	1 cut(s)	784
BspFNI	CGCG	2 cut(s)	44, 1150
BspHI	TCATGA	1 cut(s)	974
BspLI	GGNNCC	1 cut(s)	910
BspMAI	CTGCAG	1 cut(s)	717
BspPI	GGATC	2 cut(s)	361, 1054
BspT104I	TTCGAA	1 cut(s)	12
BsrDI	GCAATG	2 cut(s)	418, 1229
BsrFI	RCCGGY	2 cut(s)	219, 870
BsrGI	TGTACA	1 cut(s)	777
BssAI	RCCGGY	2 cut(s)	219, 870
BssECI	CCNNGG	3 cut(s)	733, 1102, 1103
BssNI	GRCGYC	1 cut(s)	674
BssSI	CACGAG	1 cut(s)	998
Bst2BI	CACGAG	1 cut(s)	998
Bst2UI	CCWGG	3 cut(s)	734, 1104, 1212
Bst4CI	ACNGT	3 cut(s)	666, 782, 1260
Bst6I	CTCTTC	2 cut(s)	236, 907
BstACI	GRCGYC	1 cut(s)	674
BstAUI	TGTACA	1 cut(s)	777
BstBI	TTCGAA	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	638, 850
BstDEI	CTNAG	4 cut(s)	319, 556, 1015, 1037
BstF5I	GGATG	6 cut(s)	33, 121, 189, 395, 863, 1146
BstFNI	CGCG	2 cut(s)	44, 1150
BstH2I	RGCGCY	1 cut(s)	1184
BstHHI	GCGC	3 cut(s)	46, 766, 1183
BstMAI	GTCTC	1 cut(s)	54
BstMCI	CGRYCG	1 cut(s)	846
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 718
BstNI	CCWGG	3 cut(s)	734, 1104, 1212
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	4 cut(s)	590, 732, 1102, 1210
BstSFI	CTRYAG	1 cut(s)	713
BstUI	CGCG	2 cut(s)	44, 1150
BstV1I	GCAGC	5 cut(s)	283, 699, 705, 727, 1221
BstV2I	GAAGAC	1 cut(s)	1058
BstX2I	RGATCY	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	399
BsuRI	GGCC	3 cut(s)	200, 219, 1133
BtsCI	GGATG	6 cut(s)	33, 121, 189, 395, 863, 1146
Cac8I	GCNNGC	2 cut(s)	638, 850
CciI	TCATGA	1 cut(s)	974
CfoI	GCGC	3 cut(s)	46, 766, 1183
Cfr10I	RCCGGY	2 cut(s)	219, 870
Cfr13I	GGNCC	2 cut(s)	58, 199
Csp6I	GTAC	2 cut(s)	588, 778
CspAI	ACCGGT	1 cut(s)	870
CspCI	CAANNNNNGTGG	2 cut(s)	557, 592
CviAII	CATG	5 cut(s)	171, 208, 709, 952, 975
CviQI	GTAC	2 cut(s)	588, 778
DdeI	CTNAG	4 cut(s)	319, 556, 1015, 1037
DraI	TTTAAA	2 cut(s)	536, 704
EaeI	YGGCCR	2 cut(s)	217, 1131
Eam1104I	CTCTTC	2 cut(s)	236, 907
EarI	CTCTTC	2 cut(s)	236, 907
Eco47I	GGWCC	1 cut(s)	58
Eco47III	AGCGCT	1 cut(s)	1182
Eco57I	CTGAAG	3 cut(s)	40, 788, 888
EcoRII	CCWGG	3 cut(s)	732, 1102, 1210
FaeI	CATG	5 cut(s)	174, 211, 712, 955, 978
FaqI	GGGAC	2 cut(s)	826, 1120
FatI	CATG	5 cut(s)	170, 207, 708, 951, 974
FauI	CCCGC	1 cut(s)	49
FbaI	TGATCA	3 cut(s)	335, 392, 854
Fnu4HI	GCNGC	5 cut(s)	297, 713, 716, 719, 1235
FokI	GGATG	6 cut(s)	40, 108, 176, 402, 850, 1153
Fsp4HI	GCNGC	5 cut(s)	297, 713, 716, 719, 1235
FspBI	CTAG	2 cut(s)	415, 1087
GlaI	GCGC	3 cut(s)	45, 765, 1182
GluI	GCNGC	5 cut(s)	297, 713, 716, 719, 1235
GsuI	CTGGAG	1 cut(s)	1233
HaeII	RGCGCY	1 cut(s)	1184
HaeIII	GGCC	3 cut(s)	200, 219, 1133
HapII	CCGG	4 cut(s)	220, 592, 785, 871
HhaI	GCGC	3 cut(s)	46, 766, 1183
Hin1I	GRCGYC	1 cut(s)	674
Hin1II	CATG	5 cut(s)	174, 211, 712, 955, 978
Hin6I	GCGC	3 cut(s)	44, 764, 1181
HinP1I	GCGC	3 cut(s)	44, 764, 1181
HindIII	AAGCTT	2 cut(s)	271, 1009
HinfI	GANTC	7 cut(s)	361, 514, 729, 738, 805, 814, 895
HpaII	CCGG	4 cut(s)	220, 592, 785, 871
HphI	GGTGA	1 cut(s)	834
Hpy166II	GTNNAC	1 cut(s)	825
Hpy188I	TCNGA	5 cut(s)	351, 366, 397, 679, 686
Hpy188III	TCNNGA	5 cut(s)	647, 785, 906, 975, 1087
Hpy8I	GTNNAC	1 cut(s)	825
HpyAV	CCTTC	3 cut(s)	15, 253, 450
HpyCH4III	ACNGT	3 cut(s)	666, 782, 1260
HpyCH4IV	ACGT	1 cut(s)	674
HpyCH4V	TGCA	5 cut(s)	88, 309, 599, 621, 715
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 718
HpyF3I	CTNAG	4 cut(s)	319, 556, 1015, 1037
HpySE526I	ACGT	1 cut(s)	674
Hsp92I	GRCGYC	1 cut(s)	674
Hsp92II	CATG	5 cut(s)	174, 211, 712, 955, 978
HspAI	GCGC	3 cut(s)	44, 764, 1181
Kpn2I	TCCGGA	1 cut(s)	784
Ksp22I	TGATCA	3 cut(s)	335, 392, 854
LmnI	GCTCC	1 cut(s)	579
Lsp1109I	GCAGC	5 cut(s)	283, 699, 705, 727, 1221
LweI	GCATC	4 cut(s)	18, 130, 1037, 1131
MaeI	CTAG	2 cut(s)	415, 1087
MaeII	ACGT	1 cut(s)	674
MaeIII	GTNAC	3 cut(s)	79, 178, 954
MboII	GAAGA	5 cut(s)	253, 268, 781, 894, 1063
MfeI	CAATTG	1 cut(s)	53
MflI	RGATCY	1 cut(s)	399
MlsI	TGGCCA	1 cut(s)	1133
MluCI	AATT	7 cut(s)	53, 280, 455, 537, 723, 788, 941
MluNI	TGGCCA	1 cut(s)	1133
MlyI	GAGTC	4 cut(s)	523, 738, 808, 814
MnlI	CCTC	8 cut(s)	18, 64, 212, 328, 460, 639, 879, 982
Mox20I	TGGCCA	1 cut(s)	1133
MroI	TCCGGA	1 cut(s)	784
MroXI	GAANNNNTTC	2 cut(s)	1097, 1156
MscI	TGGCCA	1 cut(s)	1133
MseI	TTAA	8 cut(s)	224, 275, 373, 535, 545, 703, 754, 1066
Msp20I	TGGCCA	1 cut(s)	1133
MspA1I	CMGCKG	2 cut(s)	718, 852
MspI	CCGG	4 cut(s)	220, 592, 785, 871
MspR9I	CCNGG	4 cut(s)	592, 734, 1104, 1212
MunI	CAATTG	1 cut(s)	53
Mva1269I	GAATGC	1 cut(s)	582
MvaI	CCWGG	3 cut(s)	734, 1104, 1212
MvnI	CGCG	2 cut(s)	44, 1150
MwoI	GCNNNNNNNGC	2 cut(s)	260, 718
NciI	CCSGG	1 cut(s)	592
NlaIII	CATG	5 cut(s)	174, 211, 712, 955, 978
NlaIV	GGNNCC	1 cut(s)	910
NmuCI	GTSAC	1 cut(s)	954
NspI	RCATGY	1 cut(s)	211
NspV	TTCGAA	1 cut(s)	12
PagI	TCATGA	1 cut(s)	974
PasI	CCCWGGG	1 cut(s)	1103
PciI	ACATGT	1 cut(s)	207
PctI	GAATGC	1 cut(s)	582
PdmI	GAANNNNTTC	2 cut(s)	1097, 1156
PfeI	GAWTC	3 cut(s)	361, 738, 895
PflFI	GACNNNGTC	1 cut(s)	469
PinAI	ACCGGT	1 cut(s)	870
PkrI	GCNGC	5 cut(s)	298, 714, 717, 720, 1236
PleI	GAGTC	4 cut(s)	522, 737, 808, 813
PpsI	GAGTC	4 cut(s)	522, 737, 808, 813
PscI	ACATGT	1 cut(s)	207
PshBI	ATTAAT	1 cut(s)	373
Psp6I	CCWGG	3 cut(s)	732, 1102, 1210
PspGI	CCWGG	3 cut(s)	732, 1102, 1210
PspN4I	GGNNCC	1 cut(s)	910
PspPI	GGNCC	2 cut(s)	58, 199
PstI	CTGCAG	1 cut(s)	717
PsuI	RGATCY	1 cut(s)	399
PsyI	GACNNNGTC	1 cut(s)	469
PvuII	CAGCTG	2 cut(s)	718, 852
RsaI	GTAC	2 cut(s)	589, 779
RsaNI	GTAC	2 cut(s)	588, 778
SaqAI	TTAA	8 cut(s)	224, 275, 373, 535, 545, 703, 754, 1066
SatI	GCNGC	5 cut(s)	297, 713, 716, 719, 1235
Sau96I	GGNCC	2 cut(s)	58, 199
SchI	GAGTC	4 cut(s)	523, 738, 808, 814
ScrFI	CCNGG	4 cut(s)	592, 734, 1104, 1212
SfaNI	GCATC	4 cut(s)	18, 130, 1037, 1131
SfcI	CTRYAG	1 cut(s)	713
SfuI	TTCGAA	1 cut(s)	12
SgrAI	CRCCGGYG	1 cut(s)	870
SinI	GGWCC	1 cut(s)	58
Sse9I	AATT	7 cut(s)	53, 280, 455, 537, 723, 788, 941
SsiI	CCGC	3 cut(s)	42, 833, 846
SspI	AATATT	3 cut(s)	745, 760, 1063
SspMI	CTAG	2 cut(s)	415, 1087
StyD4I	CCNGG	4 cut(s)	590, 732, 1102, 1210
TaaI	ACNGT	3 cut(s)	666, 782, 1260
TaiI	ACGT	1 cut(s)	677
TaqI	TCGA	5 cut(s)	12, 69, 452, 691, 1049
TaqII	GACCGA	1 cut(s)	507
TasI	AATT	7 cut(s)	53, 280, 455, 537, 723, 788, 941
TatI	WGTACW	1 cut(s)	777
TfiI	GAWTC	3 cut(s)	361, 738, 895
Tru1I	TTAA	8 cut(s)	224, 275, 373, 535, 545, 703, 754, 1066
Tru9I	TTAA	8 cut(s)	224, 275, 373, 535, 545, 703, 754, 1066
TseFI	GTSAC	1 cut(s)	954
TseI	GCWGC	5 cut(s)	296, 712, 715, 718, 1234
Tsp45I	GTSAC	1 cut(s)	954
TspGWI	ACGGA	1 cut(s)	979
Tth111I	GACNNNGTC	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	58
VspI	ATTAAT	1 cut(s)	373
XapI	RAATTY	2 cut(s)	455, 537
XbaI	TCTAGA	1 cut(s)	1086
XceI	RCATGY	1 cut(s)	211
XmnI	GAANNNNTTC	2 cut(s)	1097, 1156
XspI	CTAG	2 cut(s)	415, 1087
ZraI	GACGTC	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.