Rw3G009890

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0008870
Physical Location & Seq
Forward (+)
9509844 .. 9510806
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G009890.1

Sequence Viewer

Length: 963 bp
ATGATCAGAGCTCTTTGGCACGATCTAGCATTGCTTGAAAACCAGATTCCCTTCTTTATTCTGGAAAAGTTATACGATATTATCAAGCCTCGTTTAATGAGCAAGTGCAGAGCACCAGACTCGGTCACTAGTCTTGCTTTAAGTTTCTTTAAGCCTATGATGAGCCAAAACTCAAATATAGAGGAGCATTCGTACCCGGACTGCAAACATTTGCTTGATCTCTTGCACAAATGCCCCCTGCTCGCAGCTTCTGGAGTAGATACTGCCTTCACAGCCTACGACGTCAGAGATGGGAGATCTAGAATTGCTTTAAACCATGCTGCAGCAGCTAATTTGACTCCAGGGAATCAATATTGGGGATTGAATTATTGCGCTGAAGAACTTGTACAGTCCGGAATTGAGCTTTTTAAAGAGTCAGAGGCTGACTCTTTGGTGAACATAACCGCCACGAGACACGGCCAGCTGATCAAAATCCCACCGCTGTTCATTGATGAGGTAAGGGATTCACTCTTCAGGAACCTGATTGCCTACGAGCAAAGCAGTATTAAAATTAGTCATCATGTTACATCTTATGTTATCCTCATGAAAAGTCTTATACGTTCTCCACGAGATGTAAAGCTTCTTAAGAAAAAAGGCATCATATCTCAGTATTGGATTGACGACCAAGAATATTCAACTTACTTCAGAAGTCTTCTAGATGAAGTTTTTCCCACGGACTTCTATTTCGGTTCTCTGTGTTGCCAAGTGGATGCCTACGCGAATAAGTTCTGGTTTCGTAGAAAGATGAGCGCTCTTTATCACAATTATTTCTCAACAGCATGGAGTATGACATCATTCATTGCTGCCATTTGCCTTTTCATTCTCACGGTCTTACAAACATACTTTACCATCAACCCAGCTCGCTATTCTTGCTTCATACATGTTAATATGTCTCCTCTTTTCGTAAATGCAGTTGGGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

320

Amino Acids

36.72

Weight (kDa)

7.61

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 2 - 288 1.2e-62 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 285
AccII CGCG 1 cut(s) 758
AccIII TCCGGA 1 cut(s) 392
AciI CCGC 2 cut(s) 444, 479
AcoI YGGCCR 1 cut(s) 457
AcuI CTGAAG 3 cut(s) 396, 496, 667
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 2 cut(s) 194, 387
AfeI AGCGCT 1 cut(s) 790
AflII CTTAAG 1 cut(s) 623
AflIII ACRYGT 1 cut(s) 919
AgsI TTSAA 3 cut(s) 38, 364, 675
AhlI ACTAGT 1 cut(s) 128
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 7 cut(s) 11, 248, 329, 403, 463, 619, 899
AluI AGCT 7 cut(s) 11, 248, 329, 403, 463, 619, 899
Alw21I GWGCWC 2 cut(s) 13, 115
Alw26I GTCTC 2 cut(s) 445, 936
AlwNI CAGNNNCTG 2 cut(s) 251, 422
Aor13HI TCCGGA 1 cut(s) 392
Aor51HI AGCGCT 1 cut(s) 790
AoxI GGCC 1 cut(s) 457
ApeKI GCWGC 5 cut(s) 245, 320, 323, 326, 842
ArsI GACNNNNNNTTYG 2 cut(s) 707, 739
Asp700I GAANNNNTTC 2 cut(s) 705, 764
AspLEI GCGC 2 cut(s) 374, 791
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 445
BanII GRGCYC 1 cut(s) 13
BarI GAAGNNNNNNTAC 2 cut(s) 369, 401
BauI CACGAG 2 cut(s) 448, 606
BbsI GAAGAC 1 cut(s) 683
Bbv12I GWGCWC 2 cut(s) 13, 115
BbvI GCAGC 5 cut(s) 257, 307, 335, 338, 829
BccI CCATC 2 cut(s) 284, 896
BceAI ACGGC 1 cut(s) 472
BcgI CGANNNNNNTGC 2 cut(s) 102, 136
BciT130I CCWGG 1 cut(s) 342
BclI TGATCA 2 cut(s) 3, 465
BcnI CCSGG 1 cut(s) 197
BcoDI GTCTC 2 cut(s) 445, 936
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 4 cut(s) 26, 129, 300, 695
BfmI CTRYAG 1 cut(s) 321
BfoI RGCGCY 1 cut(s) 792
BfrI CTTAAG 1 cut(s) 623
BglII AGATCT 1 cut(s) 296
BisI GCNGC 5 cut(s) 246, 321, 324, 327, 843
BlsI GCNGC 5 cut(s) 247, 322, 325, 328, 844
Bme1390I CCNGG 2 cut(s) 197, 342
BmiI GGNNCC 1 cut(s) 518
BmrFI CCNGG 2 cut(s) 197, 342
BmsI GCATC 2 cut(s) 645, 739
BpiI GAAGAC 1 cut(s) 683
BplI GAGNNNNNCTC 2 cut(s) 410, 442
BpmI CTGGAG 2 cut(s) 273, 324
BpuMI CCSGG 1 cut(s) 197
BsaBI GATNNNNATC 1 cut(s) 470
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 341, 711
BsaWI WCCGGW 1 cut(s) 392
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bse3DI GCAATG 2 cut(s) 29, 837
Bse8I GATNNNNATC 1 cut(s) 470
BseAI TCCGGA 1 cut(s) 392
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 341, 711
BseGI GGATG 1 cut(s) 754
BseJI GATNNNNATC 1 cut(s) 470
BseMI GCAATG 2 cut(s) 29, 837
BseMII CTCAG 1 cut(s) 659
BseRI GAGGAG 2 cut(s) 197, 924
BseXI GCAGC 5 cut(s) 257, 307, 335, 338, 829
BseYI CCCAGC 1 cut(s) 895
BsgI GTGCAG 1 cut(s) 127
Bsh1236I CGCG 1 cut(s) 758
BshFI GGCC 1 cut(s) 459
BsiHKAI GWGCWC 2 cut(s) 13, 115
BsiSI CCGG 2 cut(s) 197, 393
BsmAI GTCTC 2 cut(s) 445, 936
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 459
Bsp1286I GDGCHC 2 cut(s) 13, 115
Bsp13I TCCGGA 1 cut(s) 392
Bsp1407I TGTACA 1 cut(s) 385
Bsp143I GATC 5 cut(s) 3, 22, 217, 296, 465
BspACI CCGC 2 cut(s) 444, 479
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 1 cut(s) 658
BspEI TCCGGA 1 cut(s) 392
BspFNI CGCG 1 cut(s) 758
BspHI TCATGA 1 cut(s) 582
BspLI GGNNCC 1 cut(s) 518
BspMAI CTGCAG 1 cut(s) 325
BspTI CTTAAG 1 cut(s) 623
BsrDI GCAATG 2 cut(s) 29, 837
BsrGI TGTACA 1 cut(s) 385
BssECI CCNNGG 2 cut(s) 341, 711
BssMI GATC 5 cut(s) 3, 22, 217, 296, 465
BssNI GRCGYC 1 cut(s) 282
BssSI CACGAG 2 cut(s) 448, 606
Bst2BI CACGAG 2 cut(s) 448, 606
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 2 cut(s) 390, 868
Bst6I CTCTTC 1 cut(s) 515
BstACI GRCGYC 1 cut(s) 282
BstAFI CTTAAG 1 cut(s) 623
BstAUI TGTACA 1 cut(s) 385
BstC8I GCNNGC 3 cut(s) 243, 461, 901
BstDEI CTNAG 1 cut(s) 645
BstDSI CCRYGG 1 cut(s) 711
BstF5I GGATG 1 cut(s) 754
BstFNI CGCG 1 cut(s) 758
BstH2I RGCGCY 1 cut(s) 792
BstHHI GCGC 2 cut(s) 374, 791
BstKTI GATC 5 cut(s) 6, 25, 220, 299, 468
BstMAI GTCTC 2 cut(s) 445, 936
BstMBI GATC 5 cut(s) 3, 22, 217, 296, 465
BstMWI GCNNNNNNNGC 4 cut(s) 272, 326, 909, 956
BstNI CCWGG 1 cut(s) 342
BstNSI RCATGY 1 cut(s) 923
BstSCI CCNGG 2 cut(s) 195, 340
BstSFI CTRYAG 1 cut(s) 321
BstUI CGCG 1 cut(s) 758
BstV1I GCAGC 5 cut(s) 257, 307, 335, 338, 829
BstV2I GAAGAC 1 cut(s) 683
BstX2I RGATCY 1 cut(s) 296
BstYI RGATCY 1 cut(s) 296
BsuRI GGCC 1 cut(s) 459
BtgI CCRYGG 1 cut(s) 711
BtsCI GGATG 1 cut(s) 754
Cac8I GCNNGC 3 cut(s) 243, 461, 901
CaiI CAGNNNCTG 2 cut(s) 251, 422
CciI TCATGA 1 cut(s) 582
CfoI GCGC 2 cut(s) 374, 791
Csp6I GTAC 2 cut(s) 193, 386
CviAII CATG 6 cut(s) 317, 560, 583, 819, 920, 960
CviQI GTAC 2 cut(s) 193, 386
DdeI CTNAG 1 cut(s) 645
DpnI GATC 5 cut(s) 5, 24, 219, 298, 467
DpnII GATC 5 cut(s) 3, 22, 217, 296, 465
DraI TTTAAA 2 cut(s) 312, 409
EaeI YGGCCR 1 cut(s) 457
Eam1104I CTCTTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 515
Ecl136II GAGCTC 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 13
Eco47III AGCGCT 1 cut(s) 790
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 3 cut(s) 396, 496, 667
EcoICRI GAGCTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 340
EcoT38I GRGCYC 1 cut(s) 13
FaeI CATG 6 cut(s) 320, 563, 586, 822, 923, 963
FatI CATG 6 cut(s) 316, 559, 582, 818, 919, 959
FbaI TGATCA 2 cut(s) 3, 465
Fnu4HI GCNGC 5 cut(s) 246, 321, 324, 327, 843
FokI GGATG 1 cut(s) 761
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 5 cut(s) 246, 321, 324, 327, 843
FspBI CTAG 4 cut(s) 26, 129, 300, 695
GlaI GCGC 2 cut(s) 373, 790
GluI GCNGC 5 cut(s) 246, 321, 324, 327, 843
GsaI CCCAGC 1 cut(s) 899
GsuI CTGGAG 2 cut(s) 273, 324
HaeII RGCGCY 1 cut(s) 792
HaeIII GGCC 1 cut(s) 459
HapII CCGG 2 cut(s) 197, 393
HhaI GCGC 2 cut(s) 374, 791
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 6 cut(s) 320, 563, 586, 822, 923, 963
Hin6I GCGC 2 cut(s) 372, 789
HinP1I GCGC 2 cut(s) 372, 789
HindIII AAGCTT 1 cut(s) 617
HinfI GANTC 7 cut(s) 46, 119, 337, 346, 413, 425, 503
HpaII CCGG 2 cut(s) 197, 393
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 4 cut(s) 8, 287, 418, 686
Hpy188III TCNNGA 7 cut(s) 62, 252, 300, 393, 514, 583, 695
Hpy8I GTNNAC 1 cut(s) 436
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 2 cut(s) 61, 277
HpyCH4III ACNGT 2 cut(s) 390, 868
HpyCH4IV ACGT 2 cut(s) 282, 598
HpyCH4V TGCA 5 cut(s) 108, 204, 226, 323, 950
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 326, 909, 956
HpyF3I CTNAG 1 cut(s) 645
HpySE526I ACGT 2 cut(s) 282, 598
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 6 cut(s) 320, 563, 586, 822, 923, 963
HspAI GCGC 2 cut(s) 372, 789
Kpn2I TCCGGA 1 cut(s) 392
Ksp22I TGATCA 2 cut(s) 3, 465
Kzo9I GATC 5 cut(s) 3, 22, 217, 296, 465
LmnI GCTCC 1 cut(s) 184
Lsp1109I GCAGC 5 cut(s) 257, 307, 335, 338, 829
LweI GCATC 2 cut(s) 645, 739
MaeI CTAG 4 cut(s) 26, 129, 300, 695
MaeII ACGT 2 cut(s) 282, 598
MaeIII GTNAC 2 cut(s) 124, 562
MalI GATC 5 cut(s) 5, 24, 219, 298, 467
MboI GATC 5 cut(s) 3, 22, 217, 296, 465
MboII GAAGA 3 cut(s) 389, 502, 683
MflI RGATCY 1 cut(s) 296
MhlI GDGCHC 2 cut(s) 13, 115
MluCI AATT 6 cut(s) 303, 331, 364, 396, 549, 802
MlyI GAGTC 4 cut(s) 113, 331, 419, 422
MnlI CCTC 6 cut(s) 99, 175, 412, 487, 590, 945
MroI TCCGGA 1 cut(s) 392
MroXI GAANNNNTTC 2 cut(s) 705, 764
MseI TTAA 8 cut(s) 95, 140, 150, 311, 408, 546, 624, 924
MspA1I CMGCKG 2 cut(s) 463, 481
MspCI CTTAAG 1 cut(s) 623
MspI CCGG 2 cut(s) 197, 393
MspR9I CCNGG 2 cut(s) 197, 342
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 1 cut(s) 342
MvnI CGCG 1 cut(s) 758
MwoI GCNNNNNNNGC 4 cut(s) 272, 326, 909, 956
NciI CCSGG 1 cut(s) 197
NdeII GATC 5 cut(s) 3, 22, 217, 296, 465
NlaIII CATG 6 cut(s) 320, 563, 586, 822, 923, 963
NlaIV GGNNCC 1 cut(s) 518
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 1 cut(s) 923
PagI TCATGA 1 cut(s) 582
PciI ACATGT 1 cut(s) 919
PcsI WCGNNNNNNNCGW 1 cut(s) 604
PctI GAATGC 1 cut(s) 187
PdmI GAANNNNTTC 2 cut(s) 705, 764
PfeI GAWTC 3 cut(s) 46, 346, 503
PflFI GACNNNGTC 1 cut(s) 122
PkrI GCNGC 5 cut(s) 247, 322, 325, 328, 844
PleI GAGTC 4 cut(s) 113, 331, 419, 421
PpsI GAGTC 4 cut(s) 113, 331, 419, 421
PscI ACATGT 1 cut(s) 919
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 340
PspFI CCCAGC 1 cut(s) 895
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 518
PstI CTGCAG 1 cut(s) 325
PstNI CAGNNNCTG 2 cut(s) 251, 422
PsuI RGATCY 1 cut(s) 296
PsyI GACNNNGTC 1 cut(s) 122
PvuII CAGCTG 1 cut(s) 463
RsaI GTAC 2 cut(s) 194, 387
RsaNI GTAC 2 cut(s) 193, 386
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 8 cut(s) 95, 140, 150, 311, 408, 546, 624, 924
SatI GCNGC 5 cut(s) 246, 321, 324, 327, 843
Sau3AI GATC 5 cut(s) 3, 22, 217, 296, 465
SchI GAGTC 4 cut(s) 113, 331, 419, 422
ScrFI CCNGG 2 cut(s) 197, 342
SduI GDGCHC 2 cut(s) 13, 115
SfaNI GCATC 2 cut(s) 645, 739
SfcI CTRYAG 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
SpeI ACTAGT 1 cut(s) 128
Sse9I AATT 6 cut(s) 303, 331, 364, 396, 549, 802
SsiI CCGC 2 cut(s) 444, 479
SspI AATATT 2 cut(s) 353, 671
SspMI CTAG 4 cut(s) 26, 129, 300, 695
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 2 cut(s) 195, 340
TaaI ACNGT 2 cut(s) 390, 868
TaiI ACGT 2 cut(s) 285, 601
TaqII GACCGA 1 cut(s) 112
TasI AATT 6 cut(s) 303, 331, 364, 396, 549, 802
TatI WGTACW 1 cut(s) 385
TfiI GAWTC 3 cut(s) 46, 346, 503
Tru1I TTAA 8 cut(s) 95, 140, 150, 311, 408, 546, 624, 924
Tru9I TTAA 8 cut(s) 95, 140, 150, 311, 408, 546, 624, 924
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 5 cut(s) 245, 320, 323, 326, 842
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 6 cut(s) 475, 599, 714, 826, 847, 904
TspGWI ACGGA 1 cut(s) 728
Tth111I GACNNNGTC 1 cut(s) 122
Vha464I CTTAAG 1 cut(s) 623
XbaI TCTAGA 2 cut(s) 299, 694
XceI RCATGY 1 cut(s) 923
XmnI GAANNNNTTC 2 cut(s) 705, 764
XspI CTAG 4 cut(s) 26, 129, 300, 695
ZraI GACGTC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.