Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8146084.1

Orthogroup ID

OG0008870

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 645

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8146084.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atctgcgctattactgattttgacgttgtgattcgtcaatgctacgtcgaagatatcagtgtttcaaatgatgagcttagactaatgatgttagttgatggctgcttcatattggaacttcttctcaggttagcacctaacttggagtatataatgccacaagaatacgaatctgatccattaataaacaatgcttggatgatcagagctctttggcacgatctagcattgcttgaaaaccagattcccttctttattctggaaaagttatacgatattatcaagcctcgtttaatgagcaagtgcagagcaccagattcggtcactagtcttgttttaagtttctttaagcctatgatgagccaaaactcaaatatagaggagcattcgtacccggactgcaaacatttgcttgatctcttgcacaaatgccccctgcttgcagcttctggagtagatactgccttcacagcctacgacgtcagagatgggagatctagaattgctttaaaccatgctgcagccgctaatttgactccagggaatcaatattggggattgaattattgcgctgaagaacttgtacagtccggaattgagctttttaaagagtcagaggctgactctttggtgaacataaccgcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

215

Amino Acids

24.4

Weight (kDa)

4.63

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008870)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11220
prunus_persica	Prupe.6G273900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0462701 RchiOBHm_Chr3g0462721
rosa_laevigata	RLG00000024837
rosa_multiflora	Rmu_co8146084.1_g000001 Rmu_co8365749.1_g000001 Rmu_sc0000766.1_g000001 Rmu_sc0000766.1_g000002 Rmu_sc0004225.1_g000001 Rmu_sc0011057.1_g000006
rosa_roxburghii	Rroxscaffold_6G00417250
rosa_rugosa	Rorug03G0058800
rosa_samantha	Rh3AG116700 Rh3AG116800 Rh3BG120300 Rh3BG120400 Rh3CG123400 Rh3CG123500 Rh3DG122200 Rh5DG446700
rosa_wichuraiana	Rw3G009880 Rw3G009890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	483
AccIII	TCCGGA	1 cut(s)	590
AciI	CCGC	2 cut(s)	525, 642
AclWI	GGATC	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	594
AcyI	GRCGYC	1 cut(s)	480
AfaI	GTAC	2 cut(s)	392, 585
AgsI	TTSAA	3 cut(s)	66, 236, 562
AhlI	ACTAGT	1 cut(s)	326
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	4 cut(s)	76, 209, 446, 601
AluI	AGCT	4 cut(s)	76, 209, 446, 601
Alw21I	GWGCWC	2 cut(s)	211, 313
AlwI	GGATC	1 cut(s)	170
AlwNI	CAGNNNCTG	2 cut(s)	449, 620
Aor13HI	TCCGGA	1 cut(s)	590
ApeKI	GCWGC	4 cut(s)	102, 443, 518, 521
AseI	ATTAAT	1 cut(s)	182
Asp700I	GAANNNNTTC	1 cut(s)	120
AspLEI	GCGC	2 cut(s)	8, 572
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	643
BanII	GRGCYC	1 cut(s)	211
BarI	GAAGNNNNNNTAC	2 cut(s)	567, 599
Bbv12I	GWGCWC	2 cut(s)	211, 313
BbvI	GCAGC	4 cut(s)	89, 455, 505, 533
BccI	CCATC	2 cut(s)	92, 482
BcgI	CGANNNNNNTGC	2 cut(s)	300, 334
BciT130I	CCWGG	1 cut(s)	540
BclI	TGATCA	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	395
BcuI	ACTAGT	1 cut(s)	326
BfaI	CTAG	3 cut(s)	224, 327, 498
BfmI	CTRYAG	1 cut(s)	519
BglII	AGATCT	1 cut(s)	494
BisI	GCNGC	5 cut(s)	103, 444, 519, 522, 525
BlsI	GCNGC	5 cut(s)	104, 445, 520, 523, 526
Bme1390I	CCNGG	2 cut(s)	395, 540
BmrFI	CCNGG	2 cut(s)	395, 540
BplI	GAGNNNNNCTC	2 cut(s)	608, 640
BpmI	CTGGAG	2 cut(s)	471, 522
BpuMI	CCSGG	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	480
BsaJI	CCNNGG	1 cut(s)	539
BsaWI	WCCGGW	1 cut(s)	590
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bse3DI	GCAATG	1 cut(s)	227
BseAI	TCCGGA	1 cut(s)	590
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	1 cut(s)	539
BseGI	GGATG	1 cut(s)	204
BseMI	GCAATG	1 cut(s)	227
BseMII	CTCAG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	4 cut(s)	89, 455, 505, 533
BsgI	GTGCAG	1 cut(s)	325
BsiHKAI	GWGCWC	2 cut(s)	211, 313
BsiSI	CCGG	2 cut(s)	395, 591
BsmI	GAATGC	1 cut(s)	385
Bsp1286I	GDGCHC	2 cut(s)	211, 313
Bsp13I	TCCGGA	1 cut(s)	590
Bsp1407I	TGTACA	1 cut(s)	583
Bsp143I	GATC	5 cut(s)	175, 201, 220, 415, 494
BspACI	CCGC	2 cut(s)	525, 642
BspCNI	CTCAG	1 cut(s)	138
BspEI	TCCGGA	1 cut(s)	590
BspMAI	CTGCAG	1 cut(s)	523
BspPI	GGATC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	227
BsrGI	TGTACA	1 cut(s)	583
BssECI	CCNNGG	1 cut(s)	539
BssMI	GATC	5 cut(s)	175, 201, 220, 415, 494
BssNI	GRCGYC	1 cut(s)	480
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	1 cut(s)	588
BstACI	GRCGYC	1 cut(s)	480
BstAUI	TGTACA	1 cut(s)	583
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	2 cut(s)	77, 125
BstF5I	GGATG	1 cut(s)	204
BstHHI	GCGC	2 cut(s)	8, 572
BstKTI	GATC	5 cut(s)	178, 204, 223, 418, 497
BstMBI	GATC	5 cut(s)	175, 201, 220, 415, 494
BstMWI	GCNNNNNNNGC	2 cut(s)	470, 524
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	2 cut(s)	393, 538
BstSFI	CTRYAG	1 cut(s)	519
BstV1I	GCAGC	4 cut(s)	89, 455, 505, 533
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
BtsCI	GGATG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	441
CaiI	CAGNNNCTG	2 cut(s)	449, 620
CfoI	GCGC	2 cut(s)	8, 572
Csp6I	GTAC	2 cut(s)	391, 584
CviAII	CATG	1 cut(s)	515
CviQI	GTAC	2 cut(s)	391, 584
DdeI	CTNAG	2 cut(s)	77, 125
DpnI	GATC	5 cut(s)	177, 203, 222, 417, 496
DpnII	GATC	5 cut(s)	175, 201, 220, 415, 494
DraI	TTTAAA	2 cut(s)	510, 607
Ecl136II	GAGCTC	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	211
Eco32I	GATATC	1 cut(s)	55
Eco53kI	GAGCTC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	594
EcoICRI	GAGCTC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	538
EcoRV	GATATC	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	211
FaeI	CATG	1 cut(s)	518
FaiI	YATR	8 cut(s)	110, 150, 152, 271, 356, 377, 516, 638
FatI	CATG	1 cut(s)	514
FbaI	TGATCA	1 cut(s)	201
Fnu4HI	GCNGC	5 cut(s)	103, 444, 519, 522, 525
FokI	GGATG	1 cut(s)	211
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	5 cut(s)	103, 444, 519, 522, 525
FspBI	CTAG	3 cut(s)	224, 327, 498
GlaI	GCGC	2 cut(s)	7, 571
GluI	GCNGC	5 cut(s)	103, 444, 519, 522, 525
GsuI	CTGGAG	2 cut(s)	471, 522
HapII	CCGG	2 cut(s)	395, 591
HhaI	GCGC	2 cut(s)	8, 572
Hin1I	GRCGYC	1 cut(s)	480
Hin1II	CATG	1 cut(s)	518
Hin6I	GCGC	2 cut(s)	6, 570
HinP1I	GCGC	2 cut(s)	6, 570
HinfI	GANTC	8 cut(s)	31, 170, 244, 317, 535, 544, 611, 623
HpaII	CCGG	2 cut(s)	395, 591
HphI	GGTGA	1 cut(s)	643
Hpy166II	GTNNAC	1 cut(s)	634
Hpy188I	TCNGA	4 cut(s)	175, 206, 485, 616
Hpy188III	TCNNGA	4 cut(s)	260, 450, 498, 591
Hpy8I	GTNNAC	1 cut(s)	634
Hpy99I	CGWCG	2 cut(s)	50, 482
HpyAV	CCTTC	2 cut(s)	259, 475
HpyCH4III	ACNGT	1 cut(s)	588
HpyCH4IV	ACGT	3 cut(s)	24, 45, 480
HpyCH4V	TGCA	5 cut(s)	306, 402, 424, 443, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	470, 524
HpyF3I	CTNAG	2 cut(s)	77, 125
HpySE526I	ACGT	3 cut(s)	24, 45, 480
Hsp92I	GRCGYC	1 cut(s)	480
Hsp92II	CATG	1 cut(s)	518
HspAI	GCGC	2 cut(s)	6, 570
Kpn2I	TCCGGA	1 cut(s)	590
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	5 cut(s)	175, 201, 220, 415, 494
LmnI	GCTCC	1 cut(s)	382
Lsp1109I	GCAGC	4 cut(s)	89, 455, 505, 533
MaeI	CTAG	3 cut(s)	224, 327, 498
MaeII	ACGT	3 cut(s)	24, 45, 480
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	5 cut(s)	177, 203, 222, 417, 496
MboI	GATC	5 cut(s)	175, 201, 220, 415, 494
MboII	GAAGA	3 cut(s)	62, 113, 587
MflI	RGATCY	1 cut(s)	494
MhlI	GDGCHC	2 cut(s)	211, 313
MluCI	AATT	4 cut(s)	501, 529, 562, 594
MlyI	GAGTC	3 cut(s)	529, 617, 620
MnlI	CCTC	3 cut(s)	297, 373, 610
MroI	TCCGGA	1 cut(s)	590
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	6 cut(s)	182, 293, 338, 348, 509, 606
MspI	CCGG	2 cut(s)	395, 591
MspR9I	CCNGG	2 cut(s)	395, 540
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	2 cut(s)	470, 524
NciI	CCSGG	1 cut(s)	395
NdeII	GATC	5 cut(s)	175, 201, 220, 415, 494
NlaIII	CATG	1 cut(s)	518
NmuCI	GTSAC	1 cut(s)	322
PctI	GAATGC	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	5 cut(s)	31, 170, 244, 317, 544
PkrI	GCNGC	5 cut(s)	104, 445, 520, 523, 526
PleI	GAGTC	3 cut(s)	529, 617, 619
PpsI	GAGTC	3 cut(s)	529, 617, 619
PshBI	ATTAAT	1 cut(s)	182
Psp124BI	GAGCTC	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PstI	CTGCAG	1 cut(s)	523
PstNI	CAGNNNCTG	2 cut(s)	449, 620
PsuI	RGATCY	1 cut(s)	494
RsaI	GTAC	2 cut(s)	392, 585
RsaNI	GTAC	2 cut(s)	391, 584
SacI	GAGCTC	1 cut(s)	211
SaqAI	TTAA	6 cut(s)	182, 293, 338, 348, 509, 606
SatI	GCNGC	5 cut(s)	103, 444, 519, 522, 525
Sau3AI	GATC	5 cut(s)	175, 201, 220, 415, 494
SchI	GAGTC	3 cut(s)	529, 617, 620
ScrFI	CCNGG	2 cut(s)	395, 540
SduI	GDGCHC	2 cut(s)	211, 313
SetI	ASST	9 cut(s)	27, 48, 78, 131, 139, 211, 448, 483, 603
SfcI	CTRYAG	1 cut(s)	519
SpeI	ACTAGT	1 cut(s)	326
Sse9I	AATT	4 cut(s)	501, 529, 562, 594
SsiI	CCGC	2 cut(s)	525, 642
SspI	AATATT	1 cut(s)	551
SspMI	CTAG	3 cut(s)	224, 327, 498
SstI	GAGCTC	1 cut(s)	211
StyD4I	CCNGG	2 cut(s)	393, 538
TaaI	ACNGT	1 cut(s)	588
TaiI	ACGT	3 cut(s)	27, 48, 483
TaqI	TCGA	1 cut(s)	48
TaqII	GACCGA	1 cut(s)	310
TasI	AATT	4 cut(s)	501, 529, 562, 594
TatI	WGTACW	1 cut(s)	583
TauI	GCSGC	1 cut(s)	527
TfiI	GAWTC	5 cut(s)	31, 170, 244, 317, 544
Tru1I	TTAA	6 cut(s)	182, 293, 338, 348, 509, 606
Tru9I	TTAA	6 cut(s)	182, 293, 338, 348, 509, 606
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	4 cut(s)	102, 443, 518, 521
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	64
VspI	ATTAAT	1 cut(s)	182
XbaI	TCTAGA	1 cut(s)	497
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	3 cut(s)	224, 327, 498
ZraI	GACGTC	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.