Rh3DG122200

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0008870
Physical Location & Seq
Forward (+)
10363110 .. 10368788
5679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG122200.1

Sequence Viewer

Length: 1179 bp
ATGTCACGACATAAATACTATTACATGTCCCTTCTCATTCACAGCAAAGATGCAGAAAACTGCTTGGATGAATGCATCTGCGCTATTACTGATTTTGACGTTGTGATTCGTCAATGCTACGTCGAAGATATCAGTGTTTCAAATGATGAGCTTAGACTAATGATGTTAGTTGATGGCTGCTTCATATTGGAACTTCTTCTCAGGTTAGCACCTAACTTGGAGTATATAATGCCACAAGAATACGAATCTGATCCATTAATAAACAATGCTTGGATGATCAGAGCTCTTTGGCACGATCTAGCATTGCTTGAAAACCAGATTCCCTTCTTTATTCTGGAAAAGTTATACGGTATTATCAAGCCTCGTTTAATGAGCAAGTGCAGAGCACCAGATTCGGTCACTAGTCTTGTTTTAAGTTTCTTTAAGCCTATGATGAGCCAAAACTCAAATATAGAGGAGCATTCGTACCCGGACTGCAAACATTTGCTTGATCTCTTGCACAAATGCCCCCTGCTCGCAGCTTCTGGAGTAGATACTGCCTTCACAGCCTACGACGTCAGAGATGGGAGATCTAGAATTGCTTTAAACCATGCTGCAGCCGCTAATTTGACTCCAGGGAATCAATATTGGGGATTGAATTATTGCGCTGAAGAACTTGTACAGTCCGGAATTGAGCTTTTTAAAGACTCAGAGGCTGACTCTTTGGTGAACATAACCGCCGCGAGACACGGCCAGCTGATCAAAATCCCACCGCTGTTCATTGATGAGGTAAGGGATTCACTCTTCAGGAACCTGATTGCCTACGAGCAAAGCAGTATTAAAATTAGTCATCATGTTACATCTTATGTTATCCTCATGAAAAGTCTTATACGTTCTCCACGAGATGTAAAGCTTCTTAAGAAAAAAGGCATCATATCTCAGTATTGGATTGACGACCAAGAATATTCAACTTACTTCAGAAGTCTTCTAGATGAAGTTTTTCCCACGGACTTCTATTTCGGTTCTCTGTGTTGCCAAGTGGATGCCTACGCGAATAAGTTCTGGTTTCGTAGAAAGATGAGCGCTCTTTATCACACTTATTTCTCAACAGCATGGAGTATGACATCATTCATTGCTGCCATTTGCCTTTTCATTCTCACAGTCTTACAAACATACTTTACCATCAACCCAGCTCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

392

Amino Acids

45.28

Weight (kDa)

5.78

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 379 9.3e-84 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 558
AccII CGCG 2 cut(s) 722, 1031
AccIII TCCGGA 1 cut(s) 665
AciI CCGC 4 cut(s) 600, 717, 720, 752
AclWI GGATC 1 cut(s) 245
AcoI YGGCCR 1 cut(s) 730
AcuI CTGAAG 3 cut(s) 669, 769, 940
AcyI GRCGYC 1 cut(s) 555
AfaI GTAC 2 cut(s) 467, 660
AfeI AGCGCT 1 cut(s) 1063
AflII CTTAAG 1 cut(s) 896
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 4 cut(s) 141, 311, 637, 948
AhlI ACTAGT 1 cut(s) 401
AjnI CCWGG 1 cut(s) 613
AluBI AGCT 7 cut(s) 151, 284, 521, 676, 736, 892, 1172
AluI AGCT 7 cut(s) 151, 284, 521, 676, 736, 892, 1172
Alw21I GWGCWC 2 cut(s) 286, 388
Alw26I GTCTC 1 cut(s) 718
AlwI GGATC 1 cut(s) 245
AlwNI CAGNNNCTG 2 cut(s) 524, 695
Aor13HI TCCGGA 1 cut(s) 665
Aor51HI AGCGCT 1 cut(s) 1063
AoxI GGCC 1 cut(s) 730
ApeKI GCWGC 5 cut(s) 177, 518, 593, 596, 1115
ArsI GACNNNNNNTTYG 2 cut(s) 980, 1012
AseI ATTAAT 1 cut(s) 257
Asp700I GAANNNNTTC 3 cut(s) 195, 978, 1037
AspLEI GCGC 3 cut(s) 83, 647, 1064
AsuC2I CCSGG 1 cut(s) 470
AsuHPI GGTGA 1 cut(s) 718
BanII GRGCYC 1 cut(s) 286
BarI GAAGNNNNNNTAC 2 cut(s) 642, 674
BauI CACGAG 1 cut(s) 879
BbsI GAAGAC 1 cut(s) 956
Bbv12I GWGCWC 2 cut(s) 286, 388
BbvI GCAGC 5 cut(s) 164, 530, 580, 608, 1102
BccI CCATC 3 cut(s) 167, 557, 1169
BceAI ACGGC 1 cut(s) 745
BcgI CGANNNNNNTGC 2 cut(s) 375, 409
BciT130I CCWGG 1 cut(s) 615
BclI TGATCA 2 cut(s) 276, 738
BcnI CCSGG 1 cut(s) 470
BcoDI GTCTC 1 cut(s) 718
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 4 cut(s) 299, 402, 573, 968
BfmI CTRYAG 1 cut(s) 594
BfoI RGCGCY 1 cut(s) 1065
BfrI CTTAAG 1 cut(s) 896
BglII AGATCT 1 cut(s) 569
BisI GCNGC 7 cut(s) 178, 519, 594, 597, 600, 720, 1116
BlsI GCNGC 7 cut(s) 179, 520, 595, 598, 601, 721, 1117
Bme1390I CCNGG 2 cut(s) 470, 615
BmiI GGNNCC 1 cut(s) 791
BmrFI CCNGG 2 cut(s) 470, 615
BmsI GCATC 4 cut(s) 40, 84, 918, 1012
BpiI GAAGAC 1 cut(s) 956
BplI GAGNNNNNCTC 2 cut(s) 683, 715
BpmI CTGGAG 2 cut(s) 546, 597
BpuMI CCSGG 1 cut(s) 470
BsaBI GATNNNNATC 1 cut(s) 743
BsaHI GRCGYC 1 cut(s) 555
BsaJI CCNNGG 2 cut(s) 614, 984
BsaWI WCCGGW 1 cut(s) 665
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bse3DI GCAATG 2 cut(s) 302, 1110
Bse8I GATNNNNATC 1 cut(s) 743
BseAI TCCGGA 1 cut(s) 665
BseBI CCWGG 1 cut(s) 615
BseDI CCNNGG 2 cut(s) 614, 984
BseGI GGATG 3 cut(s) 73, 279, 1027
BseJI GATNNNNATC 1 cut(s) 743
BseMI GCAATG 2 cut(s) 302, 1110
BseMII CTCAG 3 cut(s) 214, 702, 932
BseRI GAGGAG 1 cut(s) 470
BseXI GCAGC 5 cut(s) 164, 530, 580, 608, 1102
BseYI CCCAGC 1 cut(s) 1168
BsgI GTGCAG 1 cut(s) 400
Bsh1236I CGCG 2 cut(s) 722, 1031
BshFI GGCC 1 cut(s) 732
BsiHKAI GWGCWC 2 cut(s) 286, 388
BsiSI CCGG 2 cut(s) 470, 666
BslFI GGGAC 1 cut(s) 13
BsmAI GTCTC 1 cut(s) 718
BsmFI GGGAC 1 cut(s) 13
BsmI GAATGC 2 cut(s) 77, 460
BsnI GGCC 1 cut(s) 732
Bsp1286I GDGCHC 2 cut(s) 286, 388
Bsp13I TCCGGA 1 cut(s) 665
Bsp1407I TGTACA 1 cut(s) 658
Bsp143I GATC 6 cut(s) 250, 276, 295, 490, 569, 738
BspACI CCGC 4 cut(s) 600, 717, 720, 752
BspANI GGCC 1 cut(s) 732
BspCNI CTCAG 3 cut(s) 213, 701, 931
BspEI TCCGGA 1 cut(s) 665
BspFNI CGCG 2 cut(s) 722, 1031
BspHI TCATGA 1 cut(s) 855
BspLI GGNNCC 1 cut(s) 791
BspMAI CTGCAG 1 cut(s) 598
BspPI GGATC 1 cut(s) 245
BspTI CTTAAG 1 cut(s) 896
BsrDI GCAATG 2 cut(s) 302, 1110
BsrGI TGTACA 1 cut(s) 658
BssECI CCNNGG 2 cut(s) 614, 984
BssMI GATC 6 cut(s) 250, 276, 295, 490, 569, 738
BssNI GRCGYC 1 cut(s) 555
BssSI CACGAG 1 cut(s) 879
Bst2BI CACGAG 1 cut(s) 879
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 3 cut(s) 350, 663, 1141
Bst6I CTCTTC 1 cut(s) 788
BstACI GRCGYC 1 cut(s) 555
BstAFI CTTAAG 1 cut(s) 896
BstAUI TGTACA 1 cut(s) 658
BstC8I GCNNGC 3 cut(s) 516, 734, 1174
BstDEI CTNAG 4 cut(s) 152, 200, 688, 918
BstDSI CCRYGG 1 cut(s) 984
BstF5I GGATG 3 cut(s) 73, 279, 1027
BstFNI CGCG 2 cut(s) 722, 1031
BstH2I RGCGCY 1 cut(s) 1065
BstHHI GCGC 3 cut(s) 83, 647, 1064
BstKTI GATC 6 cut(s) 253, 279, 298, 493, 572, 741
BstMAI GTCTC 1 cut(s) 718
BstMBI GATC 6 cut(s) 250, 276, 295, 490, 569, 738
BstMWI GCNNNNNNNGC 2 cut(s) 545, 599
BstNI CCWGG 1 cut(s) 615
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 2 cut(s) 468, 613
BstSFI CTRYAG 1 cut(s) 594
BstUI CGCG 2 cut(s) 722, 1031
BstV1I GCAGC 5 cut(s) 164, 530, 580, 608, 1102
BstV2I GAAGAC 1 cut(s) 956
BstX2I RGATCY 1 cut(s) 569
BstYI RGATCY 1 cut(s) 569
BsuRI GGCC 1 cut(s) 732
BtgI CCRYGG 1 cut(s) 984
BtsCI GGATG 3 cut(s) 73, 279, 1027
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 3 cut(s) 516, 734, 1174
CaiI CAGNNNCTG 2 cut(s) 524, 695
CciI TCATGA 1 cut(s) 855
CfoI GCGC 3 cut(s) 83, 647, 1064
Csp6I GTAC 2 cut(s) 466, 659
CviAII CATG 5 cut(s) 25, 590, 833, 856, 1092
CviQI GTAC 2 cut(s) 466, 659
DdeI CTNAG 4 cut(s) 152, 200, 688, 918
DpnI GATC 6 cut(s) 252, 278, 297, 492, 571, 740
DpnII GATC 6 cut(s) 250, 276, 295, 490, 569, 738
DraI TTTAAA 2 cut(s) 585, 682
EaeI YGGCCR 1 cut(s) 730
Eam1104I CTCTTC 1 cut(s) 788
EarI CTCTTC 1 cut(s) 788
Ecl136II GAGCTC 1 cut(s) 284
Eco24I GRGCYC 1 cut(s) 286
Eco32I GATATC 1 cut(s) 130
Eco47III AGCGCT 1 cut(s) 1063
Eco53kI GAGCTC 1 cut(s) 284
Eco57I CTGAAG 3 cut(s) 669, 769, 940
EcoICRI GAGCTC 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 613
EcoRV GATATC 1 cut(s) 130
EcoT22I ATGCAT 1 cut(s) 77
EcoT38I GRGCYC 1 cut(s) 286
FaeI CATG 5 cut(s) 28, 593, 836, 859, 1095
FaqI GGGAC 1 cut(s) 13
FatI CATG 5 cut(s) 24, 589, 832, 855, 1091
FbaI TGATCA 2 cut(s) 276, 738
Fnu4HI GCNGC 7 cut(s) 178, 519, 594, 597, 600, 720, 1116
FokI GGATG 3 cut(s) 80, 286, 1034
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 7 cut(s) 178, 519, 594, 597, 600, 720, 1116
FspBI CTAG 4 cut(s) 299, 402, 573, 968
GlaI GCGC 3 cut(s) 82, 646, 1063
GluI GCNGC 7 cut(s) 178, 519, 594, 597, 600, 720, 1116
GsaI CCCAGC 1 cut(s) 1172
GsuI CTGGAG 2 cut(s) 546, 597
HaeII RGCGCY 1 cut(s) 1065
HaeIII GGCC 1 cut(s) 732
HapII CCGG 2 cut(s) 470, 666
HhaI GCGC 3 cut(s) 83, 647, 1064
Hin1I GRCGYC 1 cut(s) 555
Hin1II CATG 5 cut(s) 28, 593, 836, 859, 1095
Hin6I GCGC 3 cut(s) 81, 645, 1062
HinP1I GCGC 3 cut(s) 81, 645, 1062
HindIII AAGCTT 1 cut(s) 890
HinfI GANTC 9 cut(s) 106, 245, 319, 392, 610, 619, 686, 698, 776
HpaII CCGG 2 cut(s) 470, 666
HphI GGTGA 1 cut(s) 718
Hpy166II GTNNAC 1 cut(s) 709
Hpy188I TCNGA 5 cut(s) 250, 281, 560, 691, 959
Hpy188III TCNNGA 8 cut(s) 6, 335, 525, 573, 666, 787, 856, 968
Hpy8I GTNNAC 1 cut(s) 709
Hpy99I CGWCG 2 cut(s) 125, 557
HpyAV CCTTC 3 cut(s) 41, 334, 550
HpyCH4III ACNGT 3 cut(s) 350, 663, 1141
HpyCH4IV ACGT 4 cut(s) 99, 120, 555, 871
HpyCH4V TGCA 6 cut(s) 53, 75, 381, 477, 499, 596
HpyF10VI GCNNNNNNNGC 2 cut(s) 545, 599
HpyF3I CTNAG 4 cut(s) 152, 200, 688, 918
HpySE526I ACGT 4 cut(s) 99, 120, 555, 871
Hsp92I GRCGYC 1 cut(s) 555
Hsp92II CATG 5 cut(s) 28, 593, 836, 859, 1095
HspAI GCGC 3 cut(s) 81, 645, 1062
Kpn2I TCCGGA 1 cut(s) 665
Ksp22I TGATCA 2 cut(s) 276, 738
Kzo9I GATC 6 cut(s) 250, 276, 295, 490, 569, 738
LmnI GCTCC 1 cut(s) 457
Lsp1109I GCAGC 5 cut(s) 164, 530, 580, 608, 1102
LweI GCATC 4 cut(s) 40, 84, 918, 1012
MaeI CTAG 4 cut(s) 299, 402, 573, 968
MaeII ACGT 4 cut(s) 99, 120, 555, 871
MaeIII GTNAC 3 cut(s) 3, 397, 835
MalI GATC 6 cut(s) 252, 278, 297, 492, 571, 740
MboI GATC 6 cut(s) 250, 276, 295, 490, 569, 738
MboII GAAGA 5 cut(s) 137, 188, 662, 775, 956
MflI RGATCY 1 cut(s) 569
MhlI GDGCHC 2 cut(s) 286, 388
MluCI AATT 5 cut(s) 576, 604, 637, 669, 822
MlyI GAGTC 3 cut(s) 604, 680, 692
MnlI CCTC 5 cut(s) 372, 448, 685, 760, 863
Mph1103I ATGCAT 1 cut(s) 77
MroI TCCGGA 1 cut(s) 665
MroXI GAANNNNTTC 3 cut(s) 195, 978, 1037
MseI TTAA 8 cut(s) 257, 368, 413, 423, 584, 681, 819, 897
MspA1I CMGCKG 2 cut(s) 736, 754
MspCI CTTAAG 1 cut(s) 896
MspI CCGG 2 cut(s) 470, 666
MspR9I CCNGG 2 cut(s) 470, 615
Mva1269I GAATGC 2 cut(s) 77, 460
MvaI CCWGG 1 cut(s) 615
MvnI CGCG 2 cut(s) 722, 1031
MwoI GCNNNNNNNGC 2 cut(s) 545, 599
NciI CCSGG 1 cut(s) 470
NdeII GATC 6 cut(s) 250, 276, 295, 490, 569, 738
NlaIII CATG 5 cut(s) 28, 593, 836, 859, 1095
NlaIV GGNNCC 1 cut(s) 791
NmuCI GTSAC 2 cut(s) 3, 397
NsiI ATGCAT 1 cut(s) 77
NspI RCATGY 1 cut(s) 28
PagI TCATGA 1 cut(s) 855
PciI ACATGT 1 cut(s) 24
PcsI WCGNNNNNNNCGW 1 cut(s) 877
PctI GAATGC 2 cut(s) 77, 460
PdmI GAANNNNTTC 3 cut(s) 195, 978, 1037
PfeI GAWTC 6 cut(s) 106, 245, 319, 392, 619, 776
PkrI GCNGC 7 cut(s) 179, 520, 595, 598, 601, 721, 1117
PleI GAGTC 3 cut(s) 604, 680, 692
PpsI GAGTC 3 cut(s) 604, 680, 692
PscI ACATGT 1 cut(s) 24
PshBI ATTAAT 1 cut(s) 257
Psp124BI GAGCTC 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 613
PspFI CCCAGC 1 cut(s) 1168
PspGI CCWGG 1 cut(s) 613
PspN4I GGNNCC 1 cut(s) 791
PstI CTGCAG 1 cut(s) 598
PstNI CAGNNNCTG 2 cut(s) 524, 695
PsuI RGATCY 1 cut(s) 569
PvuII CAGCTG 1 cut(s) 736
RsaI GTAC 2 cut(s) 467, 660
RsaNI GTAC 2 cut(s) 466, 659
SacI GAGCTC 1 cut(s) 286
SaqAI TTAA 8 cut(s) 257, 368, 413, 423, 584, 681, 819, 897
SatI GCNGC 7 cut(s) 178, 519, 594, 597, 600, 720, 1116
Sau3AI GATC 6 cut(s) 250, 276, 295, 490, 569, 738
SchI GAGTC 3 cut(s) 604, 680, 692
ScrFI CCNGG 2 cut(s) 470, 615
SduI GDGCHC 2 cut(s) 286, 388
SfaNI GCATC 4 cut(s) 40, 84, 918, 1012
SfcI CTRYAG 1 cut(s) 594
SmlI CTYRAG 1 cut(s) 896
SmoI CTYRAG 1 cut(s) 896
SpeI ACTAGT 1 cut(s) 401
Sse9I AATT 5 cut(s) 576, 604, 637, 669, 822
SsiI CCGC 4 cut(s) 600, 717, 720, 752
SspI AATATT 2 cut(s) 626, 944
SspMI CTAG 4 cut(s) 299, 402, 573, 968
SstI GAGCTC 1 cut(s) 286
StyD4I CCNGG 2 cut(s) 468, 613
TaaI ACNGT 3 cut(s) 350, 663, 1141
TaiI ACGT 4 cut(s) 102, 123, 558, 874
TaqI TCGA 1 cut(s) 123
TaqII GACCGA 1 cut(s) 385
TasI AATT 5 cut(s) 576, 604, 637, 669, 822
TatI WGTACW 1 cut(s) 658
TauI GCSGC 2 cut(s) 602, 722
TfiI GAWTC 6 cut(s) 106, 245, 319, 392, 619, 776
Tru1I TTAA 8 cut(s) 257, 368, 413, 423, 584, 681, 819, 897
Tru9I TTAA 8 cut(s) 257, 368, 413, 423, 584, 681, 819, 897
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 2 cut(s) 3, 397
TseI GCWGC 5 cut(s) 177, 518, 593, 596, 1115
Tsp45I GTSAC 2 cut(s) 3, 397
TspDTI ATGAA 7 cut(s) 84, 172, 748, 872, 987, 1099, 1120
TspGWI ACGGA 1 cut(s) 1001
TspRI CASTG 1 cut(s) 139
Vha464I CTTAAG 1 cut(s) 896
VspI ATTAAT 1 cut(s) 257
XbaI TCTAGA 2 cut(s) 572, 967
XceI RCATGY 1 cut(s) 28
XmnI GAANNNNTTC 3 cut(s) 195, 978, 1037
XspI CTAG 4 cut(s) 299, 402, 573, 968
ZraI GACGTC 1 cut(s) 556
Zsp2I ATGCAT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.