Rh3CG123500

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0008870
Physical Location & Seq
Forward (+)
10024136 .. 10026728
2593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG123500.1

Sequence Viewer

Length: 837 bp
ATGTTTAAATTTTCCGGGCTCCCCTCGCTCAGGTACTTAGAGATACTGACGCGGATGAAGGTGGATGTCGACAATAAACTCGACAGCATCCCCGTGTCGCGTCTCAACACAGAGAAAGAGATAAGAGTGGAGACTCGCATCTGTAGAGTTCCTGAGAAACTTCGAGAACTGAAGGAGGATGCTTACAATCCCCGAGTTGTTTCAATTGGACCTTTCCATTCCTGTAAGGATTACCTTGCACCAATGTCACGACATAAATACTATTACATGTCCCTTCTCATTCACAGCAAAGATGCTGAAAACTGCTTGGATGAATGCATCTGCGCTATTACTGATTTTGACGTTGTGATTCGTCAATGCTACGTCGAAGATATCAGTGTTTCAAATGATGAGCTTAGACTAATGATGTTAGTTGATGGCTGCTTCATATTGGAACTTCTTCTCAGGTTAGCACCTAACTTGGAGTATATAATGCCACAAGAATACGAATCTGATCCATTAATAAACAATGCTTGGATGATCAGAGCTCTTTGGCACGATCTAGCATTGCTTGAAAACCAGATTCCCTTCTTTATTCTGGAAAAGTTGTACGATATTATCAAGCCTCGTTTAATGAGCAAGTGCAGAGCACCAGATTCGGTCACTAGTCTTGTTTTAAGTTTCTTTAAGCCTATGATGAGCCAAAACTCAAATATAGAGGAGCATTCGTACCCGGACTGCAAACATTTGCTTGATCTCTTGCACAAATGCCCCCTGCTCGCAGCTTCTGGAGTAGATACTGCCTTCACAGAATCACAGCCTACAACGTCAGAGATGGGAGATCTAGAATTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

278

Amino Acids

32.21

Weight (kDa)

5.09

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 47 - 251 6.1e-54 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 69
AccII CGCG 2 cut(s) 52, 100
AciI CCGC 1 cut(s) 52
AclWI GGATC 1 cut(s) 488
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 3 cut(s) 35, 590, 710
AfiI CCNNNNNNNGG 1 cut(s) 30
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 3 cut(s) 204, 384, 554
AhlI ACTAGT 1 cut(s) 644
AluBI AGCT 3 cut(s) 394, 527, 764
AluI AGCT 3 cut(s) 394, 527, 764
Alw21I GWGCWC 2 cut(s) 529, 631
Alw26I GTCTC 2 cut(s) 107, 125
AlwI GGATC 1 cut(s) 488
AlwNI CAGNNNCTG 1 cut(s) 767
Ama87I CYCGRG 1 cut(s) 192
ApeKI GCWGC 2 cut(s) 420, 761
ApoI RAATTY 1 cut(s) 8
AseI ATTAAT 1 cut(s) 500
Asp700I GAANNNNTTC 1 cut(s) 438
AspLEI GCGC 1 cut(s) 326
AspS9I GGNCC 1 cut(s) 209
AsuC2I CCSGG 2 cut(s) 16, 713
AvaI CYCGRG 1 cut(s) 192
AvaII GGWCC 1 cut(s) 209
BanII GRGCYC 2 cut(s) 21, 529
Bbv12I GWGCWC 2 cut(s) 529, 631
BbvI GCAGC 2 cut(s) 407, 773
BccI CCATC 2 cut(s) 410, 808
BcgI CGANNNNNNTGC 2 cut(s) 618, 652
BclI TGATCA 1 cut(s) 519
BcnI CCSGG 2 cut(s) 16, 713
BcoDI GTCTC 2 cut(s) 107, 125
BcuI ACTAGT 1 cut(s) 644
BfaI CTAG 3 cut(s) 542, 645, 824
BfmI CTRYAG 1 cut(s) 142
BglII AGATCT 1 cut(s) 820
BisI GCNGC 2 cut(s) 421, 762
BlsI GCNGC 2 cut(s) 422, 763
Bme1390I CCNGG 2 cut(s) 16, 713
Bme18I GGWCC 1 cut(s) 209
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 20
BmrFI CCNGG 2 cut(s) 16, 713
BmsI GCATC 5 cut(s) 96, 147, 169, 283, 327
BpmI CTGGAG 1 cut(s) 789
Bpu10I CCTNAGC 1 cut(s) 29
BpuMI CCSGG 2 cut(s) 16, 713
BsaXI ACNNNNNCTCC 2 cut(s) 692, 722
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse3DI GCAATG 1 cut(s) 545
BseGI GGATG 6 cut(s) 60, 70, 87, 184, 316, 522
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMI GCAATG 1 cut(s) 545
BseMII CTCAG 3 cut(s) 43, 144, 457
BseRI GAGGAG 1 cut(s) 713
BseXI GCAGC 2 cut(s) 407, 773
BsgI GTGCAG 1 cut(s) 643
Bsh1236I CGCG 2 cut(s) 52, 100
BsiHKAI GWGCWC 2 cut(s) 529, 631
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 2 cut(s) 15, 713
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 2 cut(s) 107, 125
BsmBI CGTCTC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 256
BsmI GAATGC 2 cut(s) 320, 703
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 3 cut(s) 21, 529, 631
Bsp143I GATC 5 cut(s) 493, 519, 538, 733, 820
BspACI CCGC 1 cut(s) 52
BspCNI CTCAG 3 cut(s) 42, 145, 456
BspFNI CGCG 2 cut(s) 52, 100
BspLI GGNNCC 1 cut(s) 20
BspPI GGATC 1 cut(s) 488
BsrDI GCAATG 1 cut(s) 545
BssMI GATC 5 cut(s) 493, 519, 538, 733, 820
BstC8I GCNNGC 1 cut(s) 759
BstDEI CTNAG 5 cut(s) 29, 37, 153, 395, 443
BstENI CCTNNNNNAGG 1 cut(s) 28
BstF5I GGATG 6 cut(s) 60, 70, 87, 184, 316, 522
BstFNI CGCG 2 cut(s) 52, 100
BstHHI GCGC 1 cut(s) 326
BstKTI GATC 5 cut(s) 496, 522, 541, 736, 823
BstMAI GTCTC 2 cut(s) 107, 125
BstMBI GATC 5 cut(s) 493, 519, 538, 733, 820
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 2 cut(s) 14, 711
BstSFI CTRYAG 1 cut(s) 142
BstUI CGCG 2 cut(s) 52, 100
BstV1I GCAGC 2 cut(s) 407, 773
BstX2I RGATCY 1 cut(s) 820
BstYI RGATCY 1 cut(s) 820
BtsCI GGATG 6 cut(s) 60, 70, 87, 184, 316, 522
BtsIMutI CAGTG 1 cut(s) 382
Cac8I GCNNGC 1 cut(s) 759
CaiI CAGNNNCTG 1 cut(s) 767
CfoI GCGC 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 209
CseI GACGC 2 cut(s) 58, 89
Csp6I GTAC 3 cut(s) 34, 589, 709
CviAII CATG 1 cut(s) 268
CviJI RGCY 9 cut(s) 19, 394, 420, 527, 604, 670, 681, 764, 799
CviKI_1 RGCY 9 cut(s) 19, 394, 420, 527, 604, 670, 681, 764, 799
CviQI GTAC 3 cut(s) 34, 589, 709
DdeI CTNAG 5 cut(s) 29, 37, 153, 395, 443
DpnI GATC 5 cut(s) 495, 521, 540, 735, 822
DpnII GATC 5 cut(s) 493, 519, 538, 733, 820
DraI TTTAAA 1 cut(s) 7
Ecl136II GAGCTC 1 cut(s) 527
Eco24I GRGCYC 2 cut(s) 21, 529
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 209
Eco53kI GAGCTC 1 cut(s) 527
Eco57I CTGAAG 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 527
EcoNI CCTNNNNNAGG 1 cut(s) 28
EcoRV GATATC 1 cut(s) 373
EcoT22I ATGCAT 1 cut(s) 320
EcoT38I GRGCYC 2 cut(s) 21, 529
Esp3I CGTCTC 1 cut(s) 107
FaeI CATG 1 cut(s) 271
FaiI YATR 7 cut(s) 255, 269, 428, 468, 470, 674, 695
FaqI GGGAC 1 cut(s) 256
FatI CATG 1 cut(s) 267
FbaI TGATCA 1 cut(s) 519
FblI GTMKAC 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 421, 762
FokI GGATG 6 cut(s) 67, 74, 77, 191, 323, 529
FriOI GRGCYC 2 cut(s) 21, 529
Fsp4HI GCNGC 2 cut(s) 421, 762
FspBI CTAG 3 cut(s) 542, 645, 824
GlaI GCGC 1 cut(s) 325
GluI GCNGC 2 cut(s) 421, 762
GsuI CTGGAG 1 cut(s) 789
HapII CCGG 2 cut(s) 15, 713
HgaI GACGC 2 cut(s) 58, 89
HhaI GCGC 1 cut(s) 326
Hin1II CATG 1 cut(s) 271
Hin6I GCGC 1 cut(s) 324
HinP1I GCGC 1 cut(s) 324
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 6 cut(s) 133, 349, 488, 562, 635, 791
HpaII CCGG 2 cut(s) 15, 713
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 3 cut(s) 493, 524, 811
Hpy188III TCNNGA 6 cut(s) 152, 164, 249, 578, 768, 824
Hpy8I GTNNAC 1 cut(s) 70
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 5 cut(s) 52, 166, 284, 577, 793
HpyCH4IV ACGT 3 cut(s) 342, 363, 806
HpyCH4V TGCA 5 cut(s) 239, 318, 624, 720, 742
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 5 cut(s) 29, 37, 153, 395, 443
HpySE526I ACGT 3 cut(s) 342, 363, 806
Hsp92II CATG 1 cut(s) 271
HspAI GCGC 1 cut(s) 324
Ksp22I TGATCA 1 cut(s) 519
Kzo9I GATC 5 cut(s) 493, 519, 538, 733, 820
LmnI GCTCC 2 cut(s) 24, 700
Lsp1109I GCAGC 2 cut(s) 407, 773
LweI GCATC 5 cut(s) 96, 147, 169, 283, 327
MaeI CTAG 3 cut(s) 542, 645, 824
MaeII ACGT 3 cut(s) 342, 363, 806
MaeIII GTNAC 2 cut(s) 246, 640
MalI GATC 5 cut(s) 495, 521, 540, 735, 822
MboI GATC 5 cut(s) 493, 519, 538, 733, 820
MboII GAAGA 2 cut(s) 380, 431
MfeI CAATTG 1 cut(s) 204
MflI RGATCY 1 cut(s) 820
MhlI GDGCHC 3 cut(s) 21, 529, 631
MluCI AATT 3 cut(s) 8, 204, 827
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 4 cut(s) 34, 169, 615, 691
Mph1103I ATGCAT 1 cut(s) 320
MroXI GAANNNNTTC 1 cut(s) 438
MseI TTAA 6 cut(s) 6, 500, 611, 656, 666, 835
MslI CAYNNNNRTG 1 cut(s) 92
MspI CCGG 2 cut(s) 15, 713
MspR9I CCNGG 2 cut(s) 16, 713
MunI CAATTG 1 cut(s) 204
Mva1269I GAATGC 2 cut(s) 320, 703
MvnI CGCG 2 cut(s) 52, 100
MwoI GCNNNNNNNGC 1 cut(s) 25
NciI CCSGG 2 cut(s) 16, 713
NdeII GATC 5 cut(s) 493, 519, 538, 733, 820
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 1 cut(s) 20
NmuCI GTSAC 2 cut(s) 246, 640
NsiI ATGCAT 1 cut(s) 320
NspI RCATGY 1 cut(s) 271
PciI ACATGT 1 cut(s) 267
PctI GAATGC 2 cut(s) 320, 703
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 5 cut(s) 349, 488, 562, 635, 791
PkrI GCNGC 2 cut(s) 422, 763
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
PscI ACATGT 1 cut(s) 267
PshBI ATTAAT 1 cut(s) 500
Psp124BI GAGCTC 1 cut(s) 529
PspN4I GGNNCC 1 cut(s) 20
PspPI GGNCC 1 cut(s) 209
PstNI CAGNNNCTG 1 cut(s) 767
PsuI RGATCY 1 cut(s) 820
RsaI GTAC 3 cut(s) 35, 590, 710
RsaNI GTAC 3 cut(s) 34, 589, 709
RseI CAYNNNNRTG 1 cut(s) 92
SacI GAGCTC 1 cut(s) 529
SalI GTCGAC 1 cut(s) 68
SaqAI TTAA 6 cut(s) 6, 500, 611, 656, 666, 835
SatI GCNGC 2 cut(s) 421, 762
Sau3AI GATC 5 cut(s) 493, 519, 538, 733, 820
Sau96I GGNCC 1 cut(s) 209
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 2 cut(s) 16, 713
SduI GDGCHC 3 cut(s) 21, 529, 631
SfaNI GCATC 5 cut(s) 96, 147, 169, 283, 327
SfcI CTRYAG 1 cut(s) 142
SinI GGWCC 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 92
SpeI ACTAGT 1 cut(s) 644
Sse9I AATT 3 cut(s) 8, 204, 827
SsiI CCGC 1 cut(s) 52
SspMI CTAG 3 cut(s) 542, 645, 824
SstI GAGCTC 1 cut(s) 529
StyD4I CCNGG 2 cut(s) 14, 711
TaiI ACGT 3 cut(s) 345, 366, 809
TaqI TCGA 4 cut(s) 69, 81, 163, 366
TaqII GACCGA 1 cut(s) 628
TasI AATT 3 cut(s) 8, 204, 827
TfiI GAWTC 5 cut(s) 349, 488, 562, 635, 791
Tru1I TTAA 6 cut(s) 6, 500, 611, 656, 666, 835
Tru9I TTAA 6 cut(s) 6, 500, 611, 656, 666, 835
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 2 cut(s) 246, 640
TseI GCWGC 2 cut(s) 420, 761
Tsp45I GTSAC 2 cut(s) 246, 640
TspDTI ATGAA 3 cut(s) 71, 327, 415
TspRI CASTG 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 209
VspI ATTAAT 1 cut(s) 500
XagI CCTNNNNNAGG 1 cut(s) 28
XapI RAATTY 1 cut(s) 8
XbaI TCTAGA 1 cut(s) 823
XceI RCATGY 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 69
XmnI GAANNNNTTC 1 cut(s) 438
XspI CTAG 3 cut(s) 542, 645, 824
Zsp2I ATGCAT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.