Rh3AG116700

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0008870
Physical Location & Seq
Forward (+)
10019081 .. 10022099
3019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG116700.1

Sequence Viewer

Length: 927 bp
ATGGACAAAGCGATGGGCACCCTACGTGACAAAGCGATGGGCATACTCGGACCAGACTTTGTCAACACCATATTACATTTAAATGATCCGGATGCTATGCAGAAGCTGCGAATTAAATATAAAGAGCGCTTGACCGAGTTCGAAGCTACTGAAAAATACATGGATAGTTACATGGAACATCCTATTGCTCCTATACATGTTGATTGGCCGGTTAATAAATGCTACAATGAAGAGATCAAATGCGAAGAAGGCAGGGATAAGCTTACTGAATTGCTACAAGATGGCTGCTTCATATTGCAACTTTTCCTCAGCTTTGCCCAATTGATCAAGGATAGTTCAGACGAATACGAATCTGATCCATTAATAAACAATGCTTGGATGATCAGAGATCTTTGGCACGATCTAGCATTGCTTGAAAACCAAATCCCCTTCTTTGTCCTCGAAATTTTATATGACATTGTCAAGCCTTGTGTAATGAAAATGAACAACGGCAAAGCACCAGAGTCGGTCAGTAGTCTTGCTTTAAATTTCTTTAAGCCTATGCTGAGCCAAAACTCAAATATAGTGGAGCATTCGTACCCGGACTGCAAACATTTGCTTGATCTCTTGCACAAATCCTCCCTGCTCGCAGTTTCAGGAGATACTGCCTTCACAGTCTATGACGTCAGAGATCGGAGATCGACAATGGCTTTAAACCATGCTGCAGCTGCTAATTTGAGTCCAGGGAATCAATATTGGGGATTAAAATATTGCGCTGAAGAACTTGTACAGTCCGGAATTGAGCTTCGTAAAGAGTCAGGGGACTCTCTGGTGAACATAACCACCACAAGCGACCGCCAGCTGATCATCAACATCCCACCGCTGTTCATTGACGAGGGACTTCTATTTCAGTTCTTTGTGTGGCCAAGTGGATGCCTACGCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

308

Amino Acids

35.23

Weight (kDa)

4.92

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 32 - 293 1.2e-34 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 666
AccB1I GGYRCC 1 cut(s) 17
AccII CGCG 1 cut(s) 921
AccIII TCCGGA 2 cut(s) 88, 773
AciI CCGC 2 cut(s) 835, 860
AclWI GGATC 2 cut(s) 80, 350
AcoI YGGCCR 2 cut(s) 206, 902
AcsI RAATTY 2 cut(s) 444, 526
AcuI CTGAAG 1 cut(s) 777
AcyI GRCGYC 1 cut(s) 663
AfaI GTAC 2 cut(s) 578, 768
AfeI AGCGCT 1 cut(s) 128
AflIII ACRYGT 1 cut(s) 196
AgsI TTSAA 1 cut(s) 416
AjnI CCWGG 1 cut(s) 721
AluBI AGCT 7 cut(s) 106, 146, 262, 312, 707, 784, 841
AluI AGCT 7 cut(s) 106, 146, 262, 312, 707, 784, 841
AlwI GGATC 2 cut(s) 80, 350
AlwNI CAGNNNCTG 1 cut(s) 106
Aor13HI TCCGGA 2 cut(s) 88, 773
Aor51HI AGCGCT 1 cut(s) 128
AoxI GGCC 2 cut(s) 206, 902
ApeKI GCWGC 5 cut(s) 106, 285, 701, 704, 707
ApoI RAATTY 2 cut(s) 444, 526
AseI ATTAAT 1 cut(s) 362
AspLEI GCGC 2 cut(s) 129, 755
AspS9I GGNCC 1 cut(s) 50
AsuC2I CCSGG 1 cut(s) 581
AsuHPI GGTGA 1 cut(s) 823
AsuII TTCGAA 1 cut(s) 141
AvaII GGWCC 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 20
BalI TGGCCA 1 cut(s) 904
BanI GGYRCC 1 cut(s) 17
BarI GAAGNNNNNNTAC 2 cut(s) 750, 782
BbvCI CCTCAGC 1 cut(s) 308
BbvI GCAGC 5 cut(s) 93, 272, 688, 694, 716
BccI CCATC 3 cut(s) 7, 31, 275
BceAI ACGGC 1 cut(s) 505
BcgI CGANNNNNNTGC 2 cut(s) 486, 520
BciT130I CCWGG 1 cut(s) 723
BclI TGATCA 3 cut(s) 324, 381, 843
BcnI CCSGG 1 cut(s) 581
BfaI CTAG 1 cut(s) 404
BfmI CTRYAG 1 cut(s) 702
BfoI RGCGCY 1 cut(s) 130
BglII AGATCT 1 cut(s) 388
BisI GCNGC 5 cut(s) 107, 286, 702, 705, 708
BlpI GCTNAGC 1 cut(s) 545
BlsI GCNGC 5 cut(s) 108, 287, 703, 706, 709
Bme1390I CCNGG 2 cut(s) 581, 723
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 2 cut(s) 581, 723
BmsI GCATC 2 cut(s) 82, 902
Bpu10I CCTNAGC 1 cut(s) 308
Bpu1102I GCTNAGC 1 cut(s) 545
Bpu14I TTCGAA 1 cut(s) 141
BpuMI CCSGG 1 cut(s) 581
BsaAI YACGTR 1 cut(s) 26
BsaHI GRCGYC 1 cut(s) 663
BsaJI CCNNGG 1 cut(s) 722
BsaWI WCCGGW 2 cut(s) 88, 773
BsaXI ACNNNNNCTCC 4 cut(s) 560, 590, 602, 632
Bse118I RCCGGY 1 cut(s) 208
Bse3DI GCAATG 1 cut(s) 407
BseAI TCCGGA 2 cut(s) 88, 773
BseBI CCWGG 1 cut(s) 723
BseDI CCNNGG 1 cut(s) 722
BseGI GGATG 5 cut(s) 97, 178, 384, 852, 917
BseMI GCAATG 1 cut(s) 407
BseMII CTCAG 2 cut(s) 322, 536
BseSI GKGCMC 1 cut(s) 20
BseXI GCAGC 5 cut(s) 93, 272, 688, 694, 716
Bsh1236I CGCG 1 cut(s) 921
Bsh1285I CGRYCG 1 cut(s) 835
BshFI GGCC 2 cut(s) 208, 904
BshNI GGYRCC 1 cut(s) 17
BsiEI CGRYCG 1 cut(s) 835
BsiSI CCGG 4 cut(s) 89, 209, 581, 774
BslFI GGGAC 2 cut(s) 815, 891
BsmFI GGGAC 2 cut(s) 815, 891
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 2 cut(s) 208, 904
Bsp119I TTCGAA 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 20
Bsp13I TCCGGA 2 cut(s) 88, 773
Bsp1407I TGTACA 1 cut(s) 766
Bsp1720I GCTNAGC 1 cut(s) 545
BspACI CCGC 2 cut(s) 835, 860
BspANI GGCC 2 cut(s) 208, 904
BspCNI CTCAG 2 cut(s) 321, 537
BspEI TCCGGA 2 cut(s) 88, 773
BspFNI CGCG 1 cut(s) 921
BspLI GGNNCC 1 cut(s) 19
BspMAI CTGCAG 1 cut(s) 706
BspPI GGATC 2 cut(s) 80, 350
BspT104I TTCGAA 1 cut(s) 141
BspT107I GGYRCC 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 407
BsrFI RCCGGY 1 cut(s) 208
BsrGI TGTACA 1 cut(s) 766
BssAI RCCGGY 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 722
BssNI GRCGYC 1 cut(s) 663
Bst2UI CCWGG 1 cut(s) 723
Bst4CI ACNGT 2 cut(s) 655, 771
Bst6I CTCTTC 1 cut(s) 225
BstACI GRCGYC 1 cut(s) 663
BstAPI GCANNNNNTGC 1 cut(s) 106
BstAUI TGTACA 1 cut(s) 766
BstBAI YACGTR 1 cut(s) 26
BstBI TTCGAA 1 cut(s) 141
BstC8I GCNNGC 2 cut(s) 627, 839
BstDEI CTNAG 2 cut(s) 308, 545
BstF5I GGATG 5 cut(s) 97, 178, 384, 852, 917
BstFNI CGCG 1 cut(s) 921
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 2 cut(s) 129, 755
BstMCI CGRYCG 1 cut(s) 835
BstMWI GCNNNNNNNGC 3 cut(s) 106, 249, 707
BstNI CCWGG 1 cut(s) 723
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 2 cut(s) 579, 721
BstSFI CTRYAG 1 cut(s) 702
BstSLI GKGCMC 1 cut(s) 20
BstUI CGCG 1 cut(s) 921
BstV1I GCAGC 5 cut(s) 93, 272, 688, 694, 716
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BsuRI GGCC 2 cut(s) 208, 904
BtgZI GCGATG 2 cut(s) 26, 50
BtsCI GGATG 5 cut(s) 97, 178, 384, 852, 917
Cac8I GCNNGC 2 cut(s) 627, 839
CaiI CAGNNNCTG 1 cut(s) 106
CfoI GCGC 2 cut(s) 129, 755
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 50
Csp6I GTAC 2 cut(s) 577, 767
CspCI CAANNNNNGTGG 2 cut(s) 546, 581
CviAII CATG 4 cut(s) 160, 172, 197, 698
CviQI GTAC 2 cut(s) 577, 767
DdeI CTNAG 2 cut(s) 308, 545
DraI TTTAAA 3 cut(s) 81, 525, 693
EaeI YGGCCR 2 cut(s) 206, 902
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 50
Eco47III AGCGCT 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 777
EcoRII CCWGG 1 cut(s) 721
FaeI CATG 4 cut(s) 163, 175, 200, 701
FaqI GGGAC 2 cut(s) 815, 891
FatI CATG 4 cut(s) 159, 171, 196, 697
FbaI TGATCA 3 cut(s) 324, 381, 843
Fnu4HI GCNGC 5 cut(s) 107, 286, 702, 705, 708
FokI GGATG 4 cut(s) 104, 165, 391, 839
Fsp4HI GCNGC 5 cut(s) 107, 286, 702, 705, 708
FspBI CTAG 1 cut(s) 404
GlaI GCGC 2 cut(s) 128, 754
GluI GCNGC 5 cut(s) 107, 286, 702, 705, 708
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 2 cut(s) 208, 904
HapII CCGG 4 cut(s) 89, 209, 581, 774
HhaI GCGC 2 cut(s) 129, 755
Hin1I GRCGYC 1 cut(s) 663
Hin1II CATG 4 cut(s) 163, 175, 200, 701
Hin6I GCGC 2 cut(s) 127, 753
HinP1I GCGC 2 cut(s) 127, 753
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 6 cut(s) 350, 503, 718, 727, 794, 803
HpaII CCGG 4 cut(s) 89, 209, 581, 774
HphI GGTGA 1 cut(s) 823
Hpy166II GTNNAC 2 cut(s) 64, 814
Hpy188I TCNGA 6 cut(s) 50, 340, 355, 386, 668, 675
Hpy188III TCNNGA 3 cut(s) 89, 636, 774
Hpy8I GTNNAC 2 cut(s) 64, 814
HpyAV CCTTC 3 cut(s) 242, 439, 658
HpyCH4III ACNGT 2 cut(s) 655, 771
HpyCH4IV ACGT 2 cut(s) 25, 663
HpyCH4V TGCA 5 cut(s) 100, 298, 588, 610, 704
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 249, 707
HpyF3I CTNAG 2 cut(s) 308, 545
HpySE526I ACGT 2 cut(s) 25, 663
Hsp92I GRCGYC 1 cut(s) 663
Hsp92II CATG 4 cut(s) 163, 175, 200, 701
HspAI GCGC 2 cut(s) 127, 753
Kpn2I TCCGGA 2 cut(s) 88, 773
Ksp22I TGATCA 3 cut(s) 324, 381, 843
LmnI GCTCC 2 cut(s) 193, 568
Lsp1109I GCAGC 5 cut(s) 93, 272, 688, 694, 716
LweI GCATC 2 cut(s) 82, 902
MaeI CTAG 1 cut(s) 404
MaeII ACGT 2 cut(s) 25, 663
MaeIII GTNAC 2 cut(s) 26, 167
MboII GAAGA 3 cut(s) 242, 257, 770
MfeI CAATTG 1 cut(s) 320
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 1 cut(s) 20
MlsI TGGCCA 1 cut(s) 904
MluCI AATT 7 cut(s) 111, 269, 320, 444, 526, 712, 777
MluNI TGGCCA 1 cut(s) 904
MlyI GAGTC 4 cut(s) 512, 727, 797, 803
MnlI CCTC 4 cut(s) 317, 449, 628, 868
Mox20I TGGCCA 1 cut(s) 904
MroI TCCGGA 2 cut(s) 88, 773
MscI TGGCCA 1 cut(s) 904
MseI TTAA 8 cut(s) 80, 114, 213, 362, 524, 534, 692, 743
MslI CAYNNNNRTG 1 cut(s) 81
Msp20I TGGCCA 1 cut(s) 904
MspA1I CMGCKG 3 cut(s) 707, 841, 862
MspI CCGG 4 cut(s) 89, 209, 581, 774
MspR9I CCNGG 2 cut(s) 581, 723
MunI CAATTG 1 cut(s) 320
Mva1269I GAATGC 1 cut(s) 571
MvaI CCWGG 1 cut(s) 723
MvnI CGCG 1 cut(s) 921
MwoI GCNNNNNNNGC 3 cut(s) 106, 249, 707
NciI CCSGG 1 cut(s) 581
NlaIII CATG 4 cut(s) 163, 175, 200, 701
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 26
NspI RCATGY 1 cut(s) 200
NspV TTCGAA 1 cut(s) 141
PciI ACATGT 1 cut(s) 196
PctI GAATGC 1 cut(s) 571
PfeI GAWTC 2 cut(s) 350, 727
PflFI GACNNNGTC 2 cut(s) 59, 458
PkrI GCNGC 5 cut(s) 108, 287, 703, 706, 709
PleI GAGTC 4 cut(s) 511, 726, 797, 802
PpsI GAGTC 4 cut(s) 511, 726, 797, 802
Ppu21I YACGTR 1 cut(s) 26
PscI ACATGT 1 cut(s) 196
PshBI ATTAAT 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 721
PspGI CCWGG 1 cut(s) 721
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 1 cut(s) 50
PstI CTGCAG 1 cut(s) 706
PstNI CAGNNNCTG 1 cut(s) 106
PsuI RGATCY 1 cut(s) 388
PsyI GACNNNGTC 2 cut(s) 59, 458
PvuII CAGCTG 2 cut(s) 707, 841
RsaI GTAC 2 cut(s) 578, 768
RsaNI GTAC 2 cut(s) 577, 767
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 8 cut(s) 80, 114, 213, 362, 524, 534, 692, 743
SatI GCNGC 5 cut(s) 107, 286, 702, 705, 708
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 4 cut(s) 512, 727, 797, 803
ScrFI CCNGG 2 cut(s) 581, 723
SduI GDGCHC 1 cut(s) 20
SetI ASST 9 cut(s) 28, 108, 148, 264, 314, 666, 709, 786, 843
SfaNI GCATC 2 cut(s) 82, 902
SfcI CTRYAG 1 cut(s) 702
SfuI TTCGAA 1 cut(s) 141
SinI GGWCC 1 cut(s) 50
SmiI ATTTAAAT 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 81
Sse9I AATT 7 cut(s) 111, 269, 320, 444, 526, 712, 777
SsiI CCGC 2 cut(s) 835, 860
SspI AATATT 2 cut(s) 734, 749
SspMI CTAG 1 cut(s) 404
StyD4I CCNGG 2 cut(s) 579, 721
SwaI ATTTAAAT 1 cut(s) 81
TaaI ACNGT 2 cut(s) 655, 771
TaiI ACGT 2 cut(s) 28, 666
TaqI TCGA 3 cut(s) 141, 441, 680
TaqII GACCGA 2 cut(s) 149, 496
TasI AATT 7 cut(s) 111, 269, 320, 444, 526, 712, 777
TatI WGTACW 1 cut(s) 766
TfiI GAWTC 2 cut(s) 350, 727
Tru1I TTAA 8 cut(s) 80, 114, 213, 362, 524, 534, 692, 743
Tru9I TTAA 8 cut(s) 80, 114, 213, 362, 524, 534, 692, 743
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 5 cut(s) 106, 285, 701, 704, 707
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 5 cut(s) 243, 280, 491, 497, 856
Tth111I GACNNNGTC 2 cut(s) 59, 458
VpaK11BI GGWCC 1 cut(s) 50
VspI ATTAAT 1 cut(s) 362
XapI RAATTY 2 cut(s) 444, 526
XceI RCATGY 1 cut(s) 200
XspI CTAG 1 cut(s) 404
ZraI GACGTC 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.