Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004741

Physical Location & Seq

Genomic Coordinates Forward (+)

14317734 .. 14321455

Gene Structure 3722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g20780.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTGGAAGAAGAAGCTACTGACTCCTCTCGCCTCTCTCCTCCGCCGGCGAACCCTAACTCATTTCTCAACCCCACAGTTCCAATCCCGCCCCAATCTCCAAAAGCTCCGCCCACTTTTCCCTCTTCCCGGCATATCTTTCATCTCCTCCCAATCCAATCCCGCCCAGTGCTGGAACTGCTGCGCCGCCGCCGCCGCTACGACGCCGTTTCTGCTCTGCTCCTCCTGTCGCTGCATCCAGCCCGTCGATCACTCCGTCGATTACTTTCAGATTTTCGGACTGGAGAGGAAGTATGATAGTGTGGAGGAACATCTAGAGGGGAAGTATAAGGATTGGCAGAAAAAGTTGCACCCTGATCTTGTTCATTCCAAATCGGAGAAGGAGAGAGAGTATGCTGCGGAACAATCTGCTCGGGTGATTGATGCATACCACACACTTAGCAAGCCCTTGGCCAGGGCAATCTATATTCTGAAGCTTGAAGGTGTACACATCGATGAAGAAGAGACACTTACTGACTTAGATTTGTTAAGTGAGATTATGGAAATAAGGGAAGCTGTTGAAGAGGCTCCCGACGCTCAAGCCTTAAATCAGATTCAGTCTCAGATGCAAGAAAAACTGAAGCAGTGGTGTAATAATTTTGCCAAGGCATTTGAAAGCCATAATTTTGAAGAAGCCGTAAAAGCTATTCGGTGTATGACTTACTATGAGCGTGTAAATGAAGAAATTGTAAAGAGACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ HSCB_C

Protein Analysis

247

Amino Acids

28.56

Weight (kDa)

6.46

Isoelectric Point (pI)

54.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	87 - 155	9.4e-06	DnaJ domain
HSCB_C	PF07743	172 - 242	3.7e-16	HSCB C-terminal oligomerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06410
fragaria_vesca	FvH4_6g20780 FvH4_6g20780 FvH4_6g20780 FvH4_6g20780 FvH4_6g20780
malus_domestica	MD12G1044000.v1.1 MD14G1043000.v1.1
prunus_persica	Prupe.7G091100_v2.0.a1
pyrus_communis	pycom14g03660
rosa_chinensis	RchiOBHm_Chr3g0476751 RchiOBHm_Chr3g0476781
rosa_laevigata	RLG00000023752 RLG00000023754
rosa_multiflora	Rmu_sc0002399.1_g000008 Rmu_sc0008085.1_g000012 Rmu_sc0042226.1_g000001
rosa_roxburghii	Rroxscaffold_6G00405030
rosa_rugosa	Rorug03G0156700 Rorug03G0156800 Rorug03G0156900
rosa_samantha	Rh3AG206900 Rh3AG207100 Rh3BG239500 Rh3BG239600 Rh3CG233400 Rh3CG233500 Rh3DG233300
rosa_wichuraiana	Rw0G002330 Rw3G018830 Rw3G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	43, 88, 109, 162, 186, 189, 192, 195, 398
AcoI	YGGCCR	1 cut(s)	450
AcuI	CTGAAG	2 cut(s)	491, 638
AcyI	GRCGYC	1 cut(s)	203
AfaI	GTAC	1 cut(s)	486
AfiI	CCNNNNNNNGG	3 cut(s)	128, 171, 453
AgsI	TTSAA	4 cut(s)	479, 560, 653, 668
AjnI	CCWGG	1 cut(s)	452
AluBI	AGCT	5 cut(s)	16, 106, 475, 554, 683
AluI	AGCT	5 cut(s)	16, 106, 475, 554, 683
Alw26I	GTCTC	3 cut(s)	497, 603, 727
Ama87I	CYCGRG	1 cut(s)	411
AoxI	GGCC	1 cut(s)	450
ApeKI	GCWGC	3 cut(s)	180, 231, 395
AspLEI	GCGC	1 cut(s)	185
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	427
AvaI	CYCGRG	1 cut(s)	411
BalI	TGGCCA	1 cut(s)	452
BbvI	GCAGC	3 cut(s)	167, 218, 382
BceAI	ACGGC	2 cut(s)	190, 659
BciT130I	CCWGG	1 cut(s)	454
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	3 cut(s)	497, 603, 727
BfaI	CTAG	1 cut(s)	314
BisI	GCNGC	7 cut(s)	181, 186, 189, 192, 195, 232, 396
BlsI	GCNGC	7 cut(s)	182, 187, 190, 193, 196, 233, 397
Bme1390I	CCNGG	2 cut(s)	129, 454
BmeT110I	CYCGRG	1 cut(s)	411
BmiI	GGNNCC	1 cut(s)	567
BmrFI	CCNGG	2 cut(s)	129, 454
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	3 cut(s)	243, 412, 594
BmuI	ACTGGG	1 cut(s)	160
BpmI	CTGGAG	1 cut(s)	302
BpuEI	CTTGAG	1 cut(s)	561
BpuMI	CCSGG	1 cut(s)	129
Bsa29I	ATCGAT	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	447, 453, 642
BsaXI	ACNNNNNCTCC	4 cut(s)	275, 305, 374, 404
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 171, 453
Bse118I	RCCGGY	1 cut(s)	45
Bse1I	ACTGG	2 cut(s)	166, 285
BseBI	CCWGG	1 cut(s)	454
BseCI	ATCGAT	1 cut(s)	492
BseDI	CCNNGG	3 cut(s)	447, 453, 642
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	3 cut(s)	128, 171, 453
BseMII	CTCAG	1 cut(s)	614
BseNI	ACTGG	2 cut(s)	166, 285
BseRI	GAGGAG	4 cut(s)	15, 29, 136, 211
BseXI	GCAGC	3 cut(s)	167, 218, 382
BshFI	GGCC	1 cut(s)	452
BshVI	ATCGAT	1 cut(s)	492
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	2 cut(s)	46, 129
BslI	CCNNNNNNNGG	3 cut(s)	128, 171, 453
BsmAI	GTCTC	3 cut(s)	497, 603, 727
BsnI	GGCC	1 cut(s)	452
BsoBI	CYCGRG	1 cut(s)	411
Bsp1407I	TGTACA	1 cut(s)	484
Bsp143I	GATC	2 cut(s)	247, 355
BspACI	CCGC	9 cut(s)	43, 88, 109, 162, 186, 189, 192, 195, 398
BspANI	GGCC	1 cut(s)	452
BspCNI	CTCAG	1 cut(s)	613
BspDI	ATCGAT	1 cut(s)	492
BspLI	GGNNCC	1 cut(s)	567
BsrFI	RCCGGY	1 cut(s)	45
BsrGI	TGTACA	1 cut(s)	484
BsrI	ACTGG	2 cut(s)	166, 285
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	3 cut(s)	447, 453, 642
BssMI	GATC	2 cut(s)	247, 355
BssNI	GRCGYC	1 cut(s)	203
BssT1I	CCWWGG	2 cut(s)	447, 642
Bst2UI	CCWGG	1 cut(s)	454
Bst4CI	ACNGT	2 cut(s)	78, 738
Bst6I	CTCTTC	3 cut(s)	129, 495, 555
BstACI	GRCGYC	1 cut(s)	203
BstAUI	TGTACA	1 cut(s)	484
BstC8I	GCNNGC	2 cut(s)	47, 443
BstDEI	CTNAG	3 cut(s)	437, 517, 600
BstENI	CCTNNNNNAGG	1 cut(s)	451
BstF5I	GGATG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	2 cut(s)	250, 358
BstMAI	GTCTC	3 cut(s)	497, 603, 727
BstMBI	GATC	2 cut(s)	247, 355
BstMWI	GCNNNNNNNGC	6 cut(s)	177, 191, 194, 211, 572, 680
BstNI	CCWGG	1 cut(s)	454
BstSCI	CCNGG	2 cut(s)	127, 452
BstV1I	GCAGC	3 cut(s)	167, 218, 382
Bsu15I	ATCGAT	1 cut(s)	492
BsuRI	GGCC	1 cut(s)	452
BsuTUI	ATCGAT	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	234
BtsI	GCAGTG	1 cut(s)	629
BtsIMutI	CAGTG	2 cut(s)	173, 629
Cac8I	GCNNGC	2 cut(s)	47, 443
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	45
ClaI	ATCGAT	1 cut(s)	492
CseI	GACGC	2 cut(s)	211, 581
Csp6I	GTAC	1 cut(s)	485
CviQI	GTAC	1 cut(s)	485
DdeI	CTNAG	3 cut(s)	437, 517, 600
DpnI	GATC	2 cut(s)	249, 357
DpnII	GATC	2 cut(s)	247, 355
EaeI	YGGCCR	1 cut(s)	450
Eam1104I	CTCTTC	3 cut(s)	129, 495, 555
EarI	CTCTTC	3 cut(s)	129, 495, 555
EciI	GGCGGA	2 cut(s)	32, 98
Eco130I	CCWWGG	2 cut(s)	447, 642
Eco57I	CTGAAG	2 cut(s)	491, 638
Eco88I	CYCGRG	1 cut(s)	411
EcoNI	CCTNNNNNAGG	1 cut(s)	451
EcoRII	CCWGG	1 cut(s)	452
EcoT14I	CCWWGG	2 cut(s)	447, 642
EcoT22I	ATGCAT	1 cut(s)	427
ErhI	CCWWGG	2 cut(s)	447, 642
FalI	AAGNNNNNCTT	2 cut(s)	492, 524
FauI	CCCGC	2 cut(s)	95, 169
Fnu4HI	GCNGC	7 cut(s)	181, 186, 189, 192, 195, 232, 396
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	7 cut(s)	181, 186, 189, 192, 195, 232, 396
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	7 cut(s)	181, 186, 189, 192, 195, 232, 396
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	1 cut(s)	452
HapII	CCGG	2 cut(s)	46, 129
HgaI	GACGC	2 cut(s)	211, 581
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	203
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	2 cut(s)	22, 592
HpaII	CCGG	2 cut(s)	46, 129
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	2 cut(s)	485, 487
Hpy188I	TCNGA	6 cut(s)	270, 278, 376, 471, 591, 603
Hpy188III	TCNNGA	2 cut(s)	314, 569
Hpy8I	GTNNAC	2 cut(s)	485, 487
Hpy99I	CGWCG	4 cut(s)	205, 248, 260, 575
HpyAV	CCTTC	2 cut(s)	373, 473
HpyCH4III	ACNGT	2 cut(s)	78, 738
HpyCH4V	TGCA	4 cut(s)	234, 349, 425, 607
HpyF10VI	GCNNNNNNNGC	6 cut(s)	177, 191, 194, 211, 572, 680
HpyF3I	CTNAG	3 cut(s)	437, 517, 600
Hsp92I	GRCGYC	1 cut(s)	203
HspAI	GCGC	1 cut(s)	183
KroI	GCCGGC	1 cut(s)	45
KroNI	GCCGGC	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	247, 355
LmnI	GCTCC	3 cut(s)	111, 224, 571
Lsp1109I	GCAGC	3 cut(s)	167, 218, 382
LweI	GCATC	3 cut(s)	243, 412, 594
MaeI	CTAG	1 cut(s)	314
MalI	GATC	2 cut(s)	249, 357
MboI	GATC	2 cut(s)	247, 355
MboII	GAAGA	8 cut(s)	19, 22, 116, 509, 512, 572, 680, 731
MlsI	TGGCCA	1 cut(s)	452
MluCI	AATT	3 cut(s)	634, 661, 723
MluNI	TGGCCA	1 cut(s)	452
MlyI	GAGTC	1 cut(s)	16
Mox20I	TGGCCA	1 cut(s)	452
Mph1103I	ATGCAT	1 cut(s)	427
MreI	CGCCGGCG	1 cut(s)	45
MroNI	GCCGGC	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	452
MseI	TTAA	2 cut(s)	527, 584
MslI	CAYNNNNRTG	1 cut(s)	492
Msp20I	TGGCCA	1 cut(s)	452
MspI	CCGG	2 cut(s)	46, 129
MspR9I	CCNGG	2 cut(s)	129, 454
MvaI	CCWGG	1 cut(s)	454
MwoI	GCNNNNNNNGC	6 cut(s)	177, 191, 194, 211, 572, 680
NaeI	GCCGGC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	2 cut(s)	247, 355
NgoMIV	GCCGGC	1 cut(s)	45
NlaIV	GGNNCC	1 cut(s)	567
NsiI	ATGCAT	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PdiI	GCCGGC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	592
PkrI	GCNGC	7 cut(s)	182, 187, 190, 193, 196, 233, 397
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	452
PspGI	CCWGG	1 cut(s)	452
PspN4I	GGNNCC	1 cut(s)	567
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
RseI	CAYNNNNRTG	1 cut(s)	492
SaqAI	TTAA	2 cut(s)	527, 584
SatI	GCNGC	7 cut(s)	181, 186, 189, 192, 195, 232, 396
Sau3AI	GATC	2 cut(s)	247, 355
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	129, 454
SetI	ASST	6 cut(s)	18, 108, 477, 484, 556, 685
SfaNI	GCATC	3 cut(s)	243, 412, 594
SgrAI	CRCCGGYG	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
Sse9I	AATT	3 cut(s)	634, 661, 723
SsiI	CCGC	9 cut(s)	43, 88, 109, 162, 186, 189, 192, 195, 398
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	2 cut(s)	127, 452
StyI	CCWWGG	2 cut(s)	447, 642
TaaI	ACNGT	2 cut(s)	78, 738
TaqI	TCGA	3 cut(s)	246, 258, 492
TasI	AATT	3 cut(s)	634, 661, 723
TatI	WGTACW	1 cut(s)	484
TauI	GCSGC	4 cut(s)	188, 191, 194, 197
TfiI	GAWTC	1 cut(s)	592
Tru1I	TTAA	2 cut(s)	527, 584
Tru9I	TTAA	2 cut(s)	527, 584
TscAI	CASTG	2 cut(s)	173, 629
TseI	GCWGC	3 cut(s)	180, 231, 395
TspDTI	ATGAA	4 cut(s)	130, 353, 510, 732
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	2 cut(s)	173, 629
XagI	CCTNNNNNAGG	1 cut(s)	451
XbaI	TCTAGA	1 cut(s)	313
XspI	CTAG	1 cut(s)	314
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.