Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004741

Physical Location & Seq

Genomic Coordinates Forward (+)

3069580 .. 3073046

Gene Structure 3467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g03660.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCCATGTGACTTCTCTTTCTTTGTTGGAGTTGTCTTGCCCTTGGAAGTTGCATTCGAACAGGTCTTGTATGCTCCAAGAATGTCGAATAAGAAGCTGCTCGCTCCTCTCTCCGCCATTCTCCGGCGAACCCTAACTCCGACGACCACTCTTTTCACCTTCAATTCCTCAAGAAATTTCCAATCCCCGGCTTTTTTCTCACCCAATGTAGAAACGGACCGCCGCCTTTTCCCCTTCGGCAGATTTGATTTTCCCGGGGATCACAGAATTCCTGGGAAATGTTTCGTCAGCTCCCAATCGGCGGAGAAAGCCGACGCTAAGTGCTGGAACTGCAGTGCCTCAGCGGCCGATACGGTGCCGTTTCTCTTGTGTTCGTCTTGTCGGTGCATTCAGCCCGTGGATCAGTCGTTGGATTACTTTCAGATATTTGGACTGGAGAGGAAGTATGATAGCAAAGTGGACGATCTGGAGGGGAAGTATAAAGCCTGGCAGAAAAAACTGCACCCTGATCTTGTTCATACGAAATCGGAGGAAAGAGAGTATGCTGCTGAACAGTCTGCTCGGGTGATTGATGCATACCGCACGCTTAGCCAGCCCTTGGCCCGGGCAATCTACATGCTGAAGCTTGAAGGTGTGGATGTTGATGAAGAAGAGACACTTTCAGAATCAGACTTGCTAACTGAGATTTTGGAAATCAGGGAAGCTGTTGAAGAGGCTGCTGACTCTCAGGCTTTGGATGAGATTCAATCTCAGATGAAAGAGAAACTAAAGCATTGGTCCGATGCTTTTGCAAACGCATTTCATAGCCGCAACTTTGGAGAAGCTCTAAAAGCTATCCGGAGAATGACTTACTATGAGCGTGTAAATGAAAGTGTTGTAAAGAAGCACTTTCAGGCTCTTAGGATCTCAAACAGTGGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ HSCB_C

Protein Analysis

308

Amino Acids

35.02

Weight (kDa)

5.79

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06410
fragaria_vesca	FvH4_6g20780 FvH4_6g20780 FvH4_6g20780 FvH4_6g20780 FvH4_6g20780
malus_domestica	MD12G1044000.v1.1 MD14G1043000.v1.1
prunus_persica	Prupe.7G091100_v2.0.a1
pyrus_communis	pycom14g03660
rosa_chinensis	RchiOBHm_Chr3g0476751 RchiOBHm_Chr3g0476781
rosa_laevigata	RLG00000023752 RLG00000023754
rosa_multiflora	Rmu_sc0002399.1_g000008 Rmu_sc0008085.1_g000012 Rmu_sc0042226.1_g000001
rosa_roxburghii	Rroxscaffold_6G00405030
rosa_rugosa	Rorug03G0156700 Rorug03G0156800 Rorug03G0156900
rosa_samantha	Rh3AG206900 Rh3AG207100 Rh3BG239500 Rh3BG239600 Rh3CG233400 Rh3CG233500 Rh3DG233300
rosa_wichuraiana	Rw0G002330 Rw3G018830 Rw3G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	355
AccB7I	CCANNNNNTGG	1 cut(s)	598
AccIII	TCCGGA	1 cut(s)	837
AciI	CCGC	7 cut(s)	114, 220, 223, 302, 344, 580, 808
AclWI	GGATC	3 cut(s)	267, 408, 911
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	2 cut(s)	175, 267
AcuI	CTGAAG	1 cut(s)	641
AfiI	CCNNNNNNNGG	5 cut(s)	123, 187, 301, 598, 603
AgsI	TTSAA	4 cut(s)	163, 629, 710, 746
AjnI	CCWGG	2 cut(s)	271, 485
AloI	GAACNNNNNNTCC	2 cut(s)	121, 153
AluBI	AGCT	6 cut(s)	97, 291, 625, 704, 824, 833
AluI	AGCT	6 cut(s)	97, 291, 625, 704, 824, 833
Alw26I	GTCTC	1 cut(s)	647
AlwI	GGATC	3 cut(s)	267, 408, 911
Ama87I	CYCGRG	3 cut(s)	254, 561, 603
Aor13HI	TCCGGA	1 cut(s)	837
AoxI	GGCC	2 cut(s)	345, 600
ApeKI	GCWGC	3 cut(s)	97, 545, 716
ApoI	RAATTY	2 cut(s)	175, 267
Asp700I	GAANNNNTTC	1 cut(s)	281
AspS9I	GGNCC	3 cut(s)	217, 601, 777
AsuC2I	CCSGG	5 cut(s)	188, 255, 256, 604, 605
AsuHPI	GGTGA	3 cut(s)	148, 192, 577
AsuII	TTCGAA	1 cut(s)	57
AvaI	CYCGRG	3 cut(s)	254, 561, 603
AvaII	GGWCC	2 cut(s)	217, 777
BanI	GGYRCC	1 cut(s)	355
BbvCI	CCTCAGC	1 cut(s)	340
BbvI	GCAGC	3 cut(s)	84, 532, 703
BceAI	ACGGC	1 cut(s)	343
BcgI	CGANNNNNNTGC	2 cut(s)	770, 804
BciT130I	CCWGG	2 cut(s)	273, 487
BcnI	CCSGG	5 cut(s)	188, 255, 256, 604, 605
BcoDI	GTCTC	1 cut(s)	647
BfmI	CTRYAG	1 cut(s)	331
BglI	GCCNNNNNGGC	1 cut(s)	344
BisI	GCNGC	6 cut(s)	98, 223, 345, 546, 717, 808
BlpI	GCTNAGC	1 cut(s)	587
BlsI	GCNGC	6 cut(s)	99, 224, 346, 547, 718, 809
Bme1390I	CCNGG	7 cut(s)	188, 255, 256, 273, 487, 604, 605
Bme18I	GGWCC	2 cut(s)	217, 777
BmeT110I	CYCGRG	3 cut(s)	254, 561, 603
BmgT120I	GGNCC	3 cut(s)	217, 601, 777
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	7 cut(s)	188, 255, 256, 273, 487, 604, 605
BmsI	GCATC	2 cut(s)	562, 772
BpmI	CTGGAG	2 cut(s)	455, 488
Bpu10I	CCTNAGC	1 cut(s)	340
Bpu1102I	GCTNAGC	1 cut(s)	587
Bpu14I	TTCGAA	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	154
BpuMI	CCSGG	5 cut(s)	188, 255, 256, 604, 605
BsaJI	CCNNGG	8 cut(s)	42, 186, 254, 255, 272, 396, 597, 603
BsaWI	WCCGGW	1 cut(s)	837
BsaXI	ACNNNNNCTCC	6 cut(s)	121, 151, 428, 458, 461, 491
Bsc4I	CCNNNNNNNGG	5 cut(s)	123, 187, 301, 598, 603
Bse1I	ACTGG	1 cut(s)	438
BseAI	TCCGGA	1 cut(s)	837
BseBI	CCWGG	2 cut(s)	273, 487
BseDI	CCNNGG	8 cut(s)	42, 186, 254, 255, 272, 396, 597, 603
BseGI	GGATG	2 cut(s)	643, 742
BseLI	CCNNNNNNNGG	5 cut(s)	123, 187, 301, 598, 603
BseMII	CTCAG	4 cut(s)	354, 672, 740, 764
BseNI	ACTGG	1 cut(s)	438
BseRI	GAGGAG	1 cut(s)	96
BseX3I	CGGCCG	1 cut(s)	345
BseXI	GCAGC	3 cut(s)	84, 532, 703
BsgI	GTGCAG	1 cut(s)	485
Bsh1285I	CGRYCG	1 cut(s)	348
BshFI	GGCC	2 cut(s)	347, 602
BshNI	GGYRCC	1 cut(s)	355
BsiEI	CGRYCG	1 cut(s)	348
BsiHKCI	CYCGRG	3 cut(s)	254, 561, 603
BsiSI	CCGG	5 cut(s)	124, 188, 255, 604, 838
BslI	CCNNNNNNNGG	5 cut(s)	123, 187, 301, 598, 603
BsmAI	GTCTC	1 cut(s)	647
BsmI	GAATGC	2 cut(s)	53, 387
BsnI	GGCC	2 cut(s)	347, 602
BsoBI	CYCGRG	3 cut(s)	254, 561, 603
Bsp119I	TTCGAA	1 cut(s)	57
Bsp13I	TCCGGA	1 cut(s)	837
Bsp143I	GATC	5 cut(s)	259, 400, 463, 508, 903
Bsp1720I	GCTNAGC	1 cut(s)	587
BspACI	CCGC	7 cut(s)	114, 220, 223, 302, 344, 580, 808
BspANI	GGCC	2 cut(s)	347, 602
BspCNI	CTCAG	4 cut(s)	353, 673, 739, 763
BspEI	TCCGGA	1 cut(s)	837
BspLI	GGNNCC	1 cut(s)	357
BspMAI	CTGCAG	1 cut(s)	335
BspPI	GGATC	3 cut(s)	267, 408, 911
BspT104I	TTCGAA	1 cut(s)	57
BspT107I	GGYRCC	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	438
BssECI	CCNNGG	8 cut(s)	42, 186, 254, 255, 272, 396, 597, 603
BssMI	GATC	5 cut(s)	259, 400, 463, 508, 903
BssT1I	CCWWGG	2 cut(s)	42, 597
Bst2UI	CCWGG	2 cut(s)	273, 487
Bst4CI	ACNGT	3 cut(s)	355, 555, 914
Bst6I	CTCTTC	2 cut(s)	645, 705
BstBI	TTCGAA	1 cut(s)	57
BstC8I	GCNNGC	3 cut(s)	102, 584, 593
BstDEI	CTNAG	7 cut(s)	318, 340, 587, 681, 726, 750, 899
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	2 cut(s)	643, 742
BstKTI	GATC	5 cut(s)	262, 403, 466, 511, 906
BstMAI	GTCTC	1 cut(s)	647
BstMBI	GATC	5 cut(s)	259, 400, 463, 508, 903
BstMCI	CGRYCG	1 cut(s)	348
BstMWI	GCNNNNNNNGC	6 cut(s)	308, 330, 344, 588, 592, 830
BstNI	CCWGG	2 cut(s)	273, 487
BstNSI	RCATGY	1 cut(s)	619
BstSCI	CCNGG	7 cut(s)	186, 253, 254, 271, 485, 602, 603
BstSFI	CTRYAG	1 cut(s)	331
BstV1I	GCAGC	3 cut(s)	84, 532, 703
BstX2I	RGATCY	1 cut(s)	903
BstYI	RGATCY	1 cut(s)	903
BstZI	CGGCCG	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	347, 602
BtgI	CCRYGG	1 cut(s)	396
BtsCI	GGATG	2 cut(s)	643, 742
BtsI	GCAGTG	1 cut(s)	340
BtsIMutI	CAGTG	2 cut(s)	340, 919
Cac8I	GCNNGC	3 cut(s)	102, 584, 593
Cfr13I	GGNCC	3 cut(s)	217, 601, 777
Cfr9I	CCCGGG	2 cut(s)	254, 603
CpoI	CGGWCCG	1 cut(s)	217
CseI	GACGC	1 cut(s)	323
CspI	CGGWCCG	1 cut(s)	217
CviAII	CATG	2 cut(s)	6, 616
DdeI	CTNAG	7 cut(s)	318, 340, 587, 681, 726, 750, 899
DpnI	GATC	5 cut(s)	261, 402, 465, 510, 905
DpnII	GATC	5 cut(s)	259, 400, 463, 508, 903
EaeI	YGGCCR	1 cut(s)	345
EagI	CGGCCG	1 cut(s)	345
Eam1104I	CTCTTC	2 cut(s)	645, 705
EarI	CTCTTC	2 cut(s)	645, 705
EciI	GGCGGA	2 cut(s)	103, 317
EclXI	CGGCCG	1 cut(s)	345
Eco130I	CCWWGG	2 cut(s)	42, 597
Eco47I	GGWCC	2 cut(s)	217, 777
Eco52I	CGGCCG	1 cut(s)	345
Eco57I	CTGAAG	1 cut(s)	641
Eco88I	CYCGRG	3 cut(s)	254, 561, 603
EcoRI	GAATTC	1 cut(s)	267
EcoRII	CCWGG	2 cut(s)	271, 485
EcoT14I	CCWWGG	2 cut(s)	42, 597
EcoT22I	ATGCAT	1 cut(s)	577
ErhI	CCWWGG	2 cut(s)	42, 597
FaeI	CATG	2 cut(s)	9, 619
FalI	AAGNNNNNCTT	4 cut(s)	642, 674, 872, 904
FatI	CATG	2 cut(s)	5, 615
Fnu4HI	GCNGC	6 cut(s)	98, 223, 345, 546, 717, 808
FokI	GGATG	2 cut(s)	650, 749
Fsp4HI	GCNGC	6 cut(s)	98, 223, 345, 546, 717, 808
GluI	GCNGC	6 cut(s)	98, 223, 345, 546, 717, 808
GsuI	CTGGAG	2 cut(s)	455, 488
HaeIII	GGCC	2 cut(s)	347, 602
HapII	CCGG	5 cut(s)	124, 188, 255, 604, 838
HgaI	GACGC	1 cut(s)	323
Hin1II	CATG	2 cut(s)	9, 619
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	3 cut(s)	665, 722, 742
HpaII	CCGG	5 cut(s)	124, 188, 255, 604, 838
HphI	GGTGA	3 cut(s)	148, 192, 577
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	7 cut(s)	141, 423, 529, 664, 670, 753, 781
Hpy188III	TCNNGA	4 cut(s)	171, 467, 838, 921
Hpy8I	GTNNAC	1 cut(s)	460
Hpy99I	CGWCG	2 cut(s)	145, 317
HpyAV	CCTTC	3 cut(s)	169, 244, 623
HpyCH4III	ACNGT	3 cut(s)	355, 555, 914
HpyCH4V	TGCA	6 cut(s)	53, 333, 387, 502, 575, 791
HpyF10VI	GCNNNNNNNGC	6 cut(s)	308, 330, 344, 588, 592, 830
HpyF3I	CTNAG	7 cut(s)	318, 340, 587, 681, 726, 750, 899
Hsp92II	CATG	2 cut(s)	9, 619
Kpn2I	TCCGGA	1 cut(s)	837
Kzo9I	GATC	5 cut(s)	259, 400, 463, 508, 903
LmnI	GCTCC	3 cut(s)	79, 109, 296
Lsp1109I	GCAGC	3 cut(s)	84, 532, 703
LweI	GCATC	2 cut(s)	562, 772
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	5 cut(s)	261, 402, 465, 510, 905
MboI	GATC	5 cut(s)	259, 400, 463, 508, 903
MboII	GAAGA	3 cut(s)	659, 662, 722
MflI	RGATCY	1 cut(s)	903
MluCI	AATT	3 cut(s)	163, 175, 267
MlyI	GAGTC	1 cut(s)	716
MmeI	TCCRAC	3 cut(s)	7, 164, 390
MnlI	CCTC	7 cut(s)	117, 178, 349, 432, 463, 523, 706
Mph1103I	ATGCAT	1 cut(s)	577
MroI	TCCGGA	1 cut(s)	837
MroXI	GAANNNNTTC	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	5 cut(s)	124, 188, 255, 604, 838
MspR9I	CCNGG	7 cut(s)	188, 255, 256, 273, 487, 604, 605
Mva1269I	GAATGC	2 cut(s)	53, 387
MvaI	CCWGG	2 cut(s)	273, 487
MwoI	GCNNNNNNNGC	6 cut(s)	308, 330, 344, 588, 592, 830
NciI	CCSGG	5 cut(s)	188, 255, 256, 604, 605
NdeII	GATC	5 cut(s)	259, 400, 463, 508, 903
NlaIII	CATG	2 cut(s)	9, 619
NlaIV	GGNNCC	1 cut(s)	357
NmuCI	GTSAC	1 cut(s)	8
NsiI	ATGCAT	1 cut(s)	577
NspI	RCATGY	1 cut(s)	619
NspV	TTCGAA	1 cut(s)	57
PctI	GAATGC	2 cut(s)	53, 387
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	665, 742
PflMI	CCANNNNNTGG	1 cut(s)	598
PkrI	GCNGC	6 cut(s)	99, 224, 346, 547, 718, 809
PleI	GAGTC	1 cut(s)	716
PpsI	GAGTC	1 cut(s)	716
Psp6I	CCWGG	2 cut(s)	271, 485
PspGI	CCWGG	2 cut(s)	271, 485
PspN4I	GGNNCC	1 cut(s)	357
PspPI	GGNCC	3 cut(s)	217, 601, 777
PstI	CTGCAG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	903
Rsr2I	CGGWCCG	1 cut(s)	217
RsrII	CGGWCCG	1 cut(s)	217
SatI	GCNGC	6 cut(s)	98, 223, 345, 546, 717, 808
Sau3AI	GATC	5 cut(s)	259, 400, 463, 508, 903
Sau96I	GGNCC	3 cut(s)	217, 601, 777
SchI	GAGTC	1 cut(s)	716
ScrFI	CCNGG	7 cut(s)	188, 255, 256, 273, 487, 604, 605
SetI	ASST	9 cut(s)	66, 99, 161, 293, 627, 634, 706, 826, 835
SfaNI	GCATC	2 cut(s)	562, 772
SfcI	CTRYAG	1 cut(s)	331
SfuI	TTCGAA	1 cut(s)	57
SinI	GGWCC	2 cut(s)	217, 777
SmaI	CCCGGG	2 cut(s)	256, 605
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
SrfI	GCCCGGGC	1 cut(s)	605
Sse9I	AATT	3 cut(s)	163, 175, 267
SsiI	CCGC	7 cut(s)	114, 220, 223, 302, 344, 580, 808
StyD4I	CCNGG	7 cut(s)	186, 253, 254, 271, 485, 602, 603
StyI	CCWWGG	2 cut(s)	42, 597
TaaI	ACNGT	3 cut(s)	355, 555, 914
TaqI	TCGA	2 cut(s)	57, 86
TasI	AATT	3 cut(s)	163, 175, 267
TauI	GCSGC	3 cut(s)	225, 347, 810
TfiI	GAWTC	2 cut(s)	665, 742
TscAI	CASTG	2 cut(s)	340, 919
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	3 cut(s)	97, 545, 716
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	5 cut(s)	506, 660, 770, 791, 882
TspGWI	ACGGA	1 cut(s)	230
TspMI	CCCGGG	2 cut(s)	254, 603
TspRI	CASTG	2 cut(s)	340, 919
Van91I	CCANNNNNTGG	1 cut(s)	598
VpaK11BI	GGWCC	2 cut(s)	217, 777
XapI	RAATTY	2 cut(s)	175, 267
XceI	RCATGY	1 cut(s)	619
XmaI	CCCGGG	2 cut(s)	254, 603
XmnI	GAANNNNTTC	1 cut(s)	281
Zsp2I	ATGCAT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.