Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004741

Physical Location & Seq

Genomic Coordinates Reverse (-)

27808800 .. 27811947

Gene Structure 3148 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023752

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTCGAAGAAGAAGCTACTGACTCCTCTCTCCTCTCTCCTCCTCCTCCTCCGACGAACCCTAACTTCCACCCCCCATTTCTCAATCCCACACTTCCAATCCCGCACCAATATCGAAAAGCTCCGCCCCCTTTTCCCGCTCCCCGGATTTTATTTTCCCGGCAAATCTTTCATCTCCTCCCAATTTGGGGACAAACCCAATTCCCCCCACTGCTGGAACTGCAGCGCTGCCGCTCAAACGACGCCGTTTCTGCTCTGCCCCTCCTGTCGGTGCATCCAGCCCGTCGATCACTCCGTCGATTACTTTCAGATATTTGGACTGGAGAGGAAGTATGATAGTGTGGAGGAACATCTGGAGGGAAAATATAAGGACTGGCAGAAAAAGTTGCACCCTGATCTTGTTCATTCAAAATCAGAGAAGGAGAGAGAGTACGCTGCTGAACAGTCTGCTCGCGTGATCGATGCATACCGCACGCTTAGCAAGCCCTTGGCGAGGGCAATATATGTTCTGAAGCTTGAAGGTGTAGACATCGATGAAGAAGAGACACTTTCAGACTTAGATTTGTTAAGTGAGATTATGGAAGTAAGGGAAGCTGTTGAAGAGGCTCCCAACTCTCAGGCTTTAAATCAGATTCAGTCTCTGATGCAAGAGAAACTGAAGCAGTGGTCTAATTCTTTTGCCGAGGCATTTGAAAGCCGGAACTTTGCAGAAGCCGTAAAAGCTATCCGGCGAATGACTTACTATGAGCGTGTAAATGAAGAAATTGTAAAGAGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ HSCB_C

Protein Analysis

260

Amino Acids

29.99

Weight (kDa)

6.67

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	100 - 168	7.7e-06	DnaJ domain
HSCB_C	PF07743	185 - 255	2e-16	HSCB C-terminal oligomerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06410
fragaria_vesca	FvH4_6g20780 FvH4_6g20780 FvH4_6g20780 FvH4_6g20780 FvH4_6g20780
malus_domestica	MD12G1044000.v1.1 MD14G1043000.v1.1
prunus_persica	Prupe.7G091100_v2.0.a1
pyrus_communis	pycom14g03660
rosa_chinensis	RchiOBHm_Chr3g0476751 RchiOBHm_Chr3g0476781
rosa_laevigata	RLG00000023752 RLG00000023754
rosa_multiflora	Rmu_sc0002399.1_g000008 Rmu_sc0008085.1_g000012 Rmu_sc0042226.1_g000001
rosa_roxburghii	Rroxscaffold_6G00405030
rosa_rugosa	Rorug03G0156700 Rorug03G0156800 Rorug03G0156900
rosa_samantha	Rh3AG206900 Rh3AG207100 Rh3BG239500 Rh3BG239600 Rh3CG233400 Rh3CG233500 Rh3DG233300
rosa_wichuraiana	Rw0G002330 Rw3G018830 Rw3G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	139, 233
AccI	GTMKAC	1 cut(s)	525
AccII	CGCG	1 cut(s)	453
AciI	CCGC	5 cut(s)	103, 124, 137, 231, 469
AcuI	CTGAAG	2 cut(s)	530, 677
AcyI	GRCGYC	1 cut(s)	242
AfaI	GTAC	1 cut(s)	431
AfeI	AGCGCT	1 cut(s)	226
AfiI	CCNNNNNNNGG	6 cut(s)	143, 186, 187, 213, 267, 492
AgsI	TTSAA	4 cut(s)	408, 518, 599, 692
AluBI	AGCT	5 cut(s)	16, 121, 514, 593, 722
AluI	AGCT	5 cut(s)	16, 121, 514, 593, 722
Alw26I	GTCTC	2 cut(s)	536, 642
AlwNI	CAGNNNCTG	1 cut(s)	640
Aor51HI	AGCGCT	1 cut(s)	226
ApeKI	GCWGC	3 cut(s)	222, 227, 434
AspLEI	GCGC	1 cut(s)	227
AsuC2I	CCSGG	2 cut(s)	144, 159
BbvI	GCAGC	3 cut(s)	214, 234, 421
BceAI	ACGGC	2 cut(s)	229, 698
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BcnI	CCSGG	2 cut(s)	144, 159
BcoDI	GTCTC	2 cut(s)	536, 642
BfmI	CTRYAG	1 cut(s)	220
BfoI	RGCGCY	1 cut(s)	228
BisI	GCNGC	4 cut(s)	223, 228, 231, 435
BlpI	GCTNAGC	1 cut(s)	476
BlsI	GCNGC	4 cut(s)	224, 229, 232, 436
Bme1390I	CCNGG	2 cut(s)	144, 159
BmiI	GGNNCC	1 cut(s)	606
BmrFI	CCNGG	2 cut(s)	144, 159
BmsI	GCATC	3 cut(s)	282, 451, 633
BpmI	CTGGAG	2 cut(s)	341, 374
Bpu1102I	GCTNAGC	1 cut(s)	476
BpuMI	CCSGG	2 cut(s)	144, 159
Bsa29I	ATCGAT	2 cut(s)	459, 531
BsaHI	GRCGYC	1 cut(s)	242
BsaJI	CCNNGG	3 cut(s)	142, 486, 681
BsaXI	ACNNNNNCTCC	4 cut(s)	314, 344, 413, 443
Bsc4I	CCNNNNNNNGG	6 cut(s)	143, 186, 187, 213, 267, 492
Bse1I	ACTGG	2 cut(s)	324, 377
BseCI	ATCGAT	2 cut(s)	459, 531
BseDI	CCNNGG	3 cut(s)	142, 486, 681
BseGI	GGATG	1 cut(s)	273
BseLI	CCNNNNNNNGG	6 cut(s)	143, 186, 187, 213, 267, 492
BseMII	CTCAG	1 cut(s)	629
BseNI	ACTGG	2 cut(s)	324, 377
BseRI	GAGGAG	7 cut(s)	15, 22, 29, 32, 35, 38, 166
BseXI	GCAGC	3 cut(s)	214, 234, 421
Bsh1236I	CGCG	1 cut(s)	453
BshVI	ATCGAT	2 cut(s)	459, 531
BsiSI	CCGG	4 cut(s)	144, 159, 697, 727
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	6 cut(s)	143, 186, 187, 213, 267, 492
BsmAI	GTCTC	2 cut(s)	536, 642
BsmFI	GGGAC	1 cut(s)	203
Bsp143I	GATC	3 cut(s)	286, 394, 456
Bsp1720I	GCTNAGC	1 cut(s)	476
BspACI	CCGC	5 cut(s)	103, 124, 137, 231, 469
BspCNI	CTCAG	1 cut(s)	628
BspDI	ATCGAT	2 cut(s)	459, 531
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	606
BspMAI	CTGCAG	1 cut(s)	224
BsrBI	CCGCTC	2 cut(s)	139, 233
BsrI	ACTGG	2 cut(s)	324, 377
BssECI	CCNNGG	3 cut(s)	142, 486, 681
BssMI	GATC	3 cut(s)	286, 394, 456
BssNI	GRCGYC	1 cut(s)	242
BssT1I	CCWWGG	1 cut(s)	486
Bst4CI	ACNGT	1 cut(s)	444
Bst6I	CTCTTC	2 cut(s)	534, 594
BstACI	GRCGYC	1 cut(s)	242
BstC8I	GCNNGC	3 cut(s)	451, 473, 482
BstDEI	CTNAG	3 cut(s)	476, 556, 615
BstENI	CCTNNNNNAGG	1 cut(s)	490
BstF5I	GGATG	1 cut(s)	273
BstFNI	CGCG	1 cut(s)	453
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	3 cut(s)	289, 397, 459
BstMAI	GTCTC	2 cut(s)	536, 642
BstMBI	GATC	3 cut(s)	286, 394, 456
BstMWI	GCNNNNNNNGC	5 cut(s)	219, 250, 477, 481, 719
BstSCI	CCNGG	2 cut(s)	142, 157
BstSFI	CTRYAG	1 cut(s)	220
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	3 cut(s)	214, 234, 421
Bsu15I	ATCGAT	2 cut(s)	459, 531
BsuTUI	ATCGAT	2 cut(s)	459, 531
BtsCI	GGATG	1 cut(s)	273
BtsI	GCAGTG	2 cut(s)	208, 668
BtsIMutI	CAGTG	2 cut(s)	208, 668
Cac8I	GCNNGC	3 cut(s)	451, 473, 482
CaiI	CAGNNNCTG	1 cut(s)	640
CfoI	GCGC	1 cut(s)	227
ClaI	ATCGAT	2 cut(s)	459, 531
CseI	GACGC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	430
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	3 cut(s)	476, 556, 615
DpnI	GATC	3 cut(s)	288, 396, 458
DpnII	GATC	3 cut(s)	286, 394, 456
DraI	TTTAAA	1 cut(s)	624
Eam1104I	CTCTTC	2 cut(s)	534, 594
EarI	CTCTTC	2 cut(s)	534, 594
EciI	GGCGGA	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	486
Eco47III	AGCGCT	1 cut(s)	226
Eco57I	CTGAAG	2 cut(s)	530, 677
EcoNI	CCTNNNNNAGG	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	486
EcoT22I	ATGCAT	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	486
FaiI	YATR	7 cut(s)	333, 366, 466, 502, 504, 578, 744
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FaqI	GGGAC	1 cut(s)	203
FauI	CCCGC	2 cut(s)	110, 144
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	4 cut(s)	223, 228, 231, 435
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	4 cut(s)	223, 228, 231, 435
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	4 cut(s)	223, 228, 231, 435
GsuI	CTGGAG	2 cut(s)	341, 374
HaeII	RGCGCY	1 cut(s)	228
HapII	CCGG	4 cut(s)	144, 159, 697, 727
HgaI	GACGC	1 cut(s)	250
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	1 cut(s)	242
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HindIII	AAGCTT	1 cut(s)	512
HinfI	GANTC	2 cut(s)	22, 631
HpaII	CCGG	4 cut(s)	144, 159, 697, 727
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	7 cut(s)	53, 309, 415, 510, 553, 630, 642
Hpy188III	TCNNGA	1 cut(s)	353
Hpy8I	GTNNAC	1 cut(s)	526
Hpy99I	CGWCG	4 cut(s)	57, 244, 287, 299
HpyAV	CCTTC	2 cut(s)	412, 512
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4V	TGCA	6 cut(s)	222, 273, 388, 464, 646, 707
HpyF10VI	GCNNNNNNNGC	5 cut(s)	219, 250, 477, 481, 719
HpyF3I	CTNAG	3 cut(s)	476, 556, 615
Hsp92I	GRCGYC	1 cut(s)	242
HspAI	GCGC	1 cut(s)	225
Kzo9I	GATC	3 cut(s)	286, 394, 456
LmnI	GCTCC	3 cut(s)	126, 144, 610
Lsp1109I	GCAGC	3 cut(s)	214, 234, 421
LweI	GCATC	3 cut(s)	282, 451, 633
MalI	GATC	3 cut(s)	288, 396, 458
MbiI	CCGCTC	2 cut(s)	139, 233
MboI	GATC	3 cut(s)	286, 394, 456
MboII	GAAGA	6 cut(s)	19, 22, 548, 551, 611, 770
MluCI	AATT	4 cut(s)	182, 199, 670, 762
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	76
Mph1103I	ATGCAT	1 cut(s)	466
MseI	TTAA	2 cut(s)	566, 623
MspI	CCGG	4 cut(s)	144, 159, 697, 727
MspR9I	CCNGG	2 cut(s)	144, 159
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	5 cut(s)	219, 250, 477, 481, 719
NciI	CCSGG	2 cut(s)	144, 159
NdeII	GATC	3 cut(s)	286, 394, 456
NlaIV	GGNNCC	1 cut(s)	606
NmeAIII	GCCGAG	1 cut(s)	706
NsiI	ATGCAT	1 cut(s)	466
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	631
PkrI	GCNGC	4 cut(s)	224, 229, 232, 436
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	606
PstI	CTGCAG	1 cut(s)	224
PstNI	CAGNNNCTG	1 cut(s)	640
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SaqAI	TTAA	2 cut(s)	566, 623
SatI	GCNGC	4 cut(s)	223, 228, 231, 435
Sau3AI	GATC	3 cut(s)	286, 394, 456
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	144, 159
SetI	ASST	6 cut(s)	18, 123, 516, 523, 595, 724
SfaNI	GCATC	3 cut(s)	282, 451, 633
SfcI	CTRYAG	1 cut(s)	220
Sse9I	AATT	4 cut(s)	182, 199, 670, 762
SsiI	CCGC	5 cut(s)	103, 124, 137, 231, 469
StyD4I	CCNGG	2 cut(s)	142, 157
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	1 cut(s)	444
TaqI	TCGA	6 cut(s)	5, 114, 285, 297, 459, 531
TasI	AATT	4 cut(s)	182, 199, 670, 762
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	631
Tru1I	TTAA	2 cut(s)	566, 623
Tru9I	TTAA	2 cut(s)	566, 623
TscAI	CASTG	2 cut(s)	215, 668
TseI	GCWGC	3 cut(s)	222, 227, 434
TspDTI	ATGAA	4 cut(s)	160, 392, 549, 771
TspGWI	ACGGA	1 cut(s)	283
TspRI	CASTG	2 cut(s)	215, 668
XagI	CCTNNNNNAGG	1 cut(s)	490
XmiI	GTMKAC	1 cut(s)	525
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.