Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0004741

Physical Location & Seq

Genomic Coordinates Forward (+)

4072165 .. 4075784

Gene Structure 3620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1043000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTCGAATAAGAAGCTGCTCGCTCCTCTCTCCGCCATTCTCCGGCGAACCCTAACTCCGACGACCACTCTTTTCACCTTCAATTCCTCAAGAAATTTCCAATCCCCCGCTTTTTTCTCACCCAAAGTAGAAACGGACCGCCGCCTTTTCGCCTTGGGCAGATTTGATTTTCCCGGGGATCACAGAATTCCCGGGAAATGTTTCGTCAGCTCCCAATCGGCGGAGGAAGCCGACGCTAAGTGCTGGAACTGCAGTGCCTCCGGGGCCGATACGGTGCCGTTTCTATTGTGCTCGTCTTGTCGGTGCATTCAGCCCGTGGATCAGTCGTTGGATTACTTTCAGATATTTGGACTGGAGAGAAAGTATGATAGCAAAGTGGATGATCTGGAGGGGAAGTATAAAGCCTGGCAGAAAAAACTGCACCCTGATCTTGTTCATACGAAATCAGAGAAGGAAAGAGAGTATGCTGCAGAACAGTCTGCTCGGGTGATTGATGCATACCGCACGCTTAGCCAGCCCTTGGCAAGGGCAATCTACATGCTGAAGCTTGAAGGTGTGGATGTTGATGAAGAAGAGACACTTTCAGAATCAGACTTGCTAACTGAGATTTTGGAAATCAGGGAAGCTGTTGAAGAGGCTGCTGACTCTCAGGCTTTGGATGAGATTCAATCTCAGATGAAAGAGAAACTAAAGCATTGGTCCGATGCTTTTGCAAACGCATTTCATAGCCGCAACTTTGGAGAAGCTCTAAAAGCTATCCGGAGAATGACTTACTATGAGCGTGTAAATGAAAGTGTTGTAAAGAAGCACTTTCAGGCTCTTAGGATCTCAAACAGTGGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ HSCB_C

Protein Analysis

282

Amino Acids

32.03

Weight (kDa)

6.13

Isoelectric Point (pI)

52.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	111 - 179	9e-06	DnaJ domain
HSCB_C	PF07743	197 - 266	2e-16	HSCB C-terminal oligomerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06410
fragaria_vesca	FvH4_6g20780 FvH4_6g20780 FvH4_6g20780 FvH4_6g20780 FvH4_6g20780
malus_domestica	MD12G1044000.v1.1 MD14G1043000.v1.1
prunus_persica	Prupe.7G091100_v2.0.a1
pyrus_communis	pycom14g03660
rosa_chinensis	RchiOBHm_Chr3g0476751 RchiOBHm_Chr3g0476781
rosa_laevigata	RLG00000023752 RLG00000023754
rosa_multiflora	Rmu_sc0002399.1_g000008 Rmu_sc0008085.1_g000012 Rmu_sc0042226.1_g000001
rosa_roxburghii	Rroxscaffold_6G00405030
rosa_rugosa	Rorug03G0156700 Rorug03G0156800 Rorug03G0156900
rosa_samantha	Rh3AG206900 Rh3AG207100 Rh3BG239500 Rh3BG239600 Rh3CG233400 Rh3CG233500 Rh3DG233300
rosa_wichuraiana	Rw0G002330 Rw3G018830 Rw3G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	274
AccB7I	CCANNNNNTGG	1 cut(s)	520
AccIII	TCCGGA	1 cut(s)	759
AciI	CCGC	7 cut(s)	33, 108, 139, 142, 221, 502, 730
AclWI	GGATC	3 cut(s)	186, 327, 833
AcsI	RAATTY	2 cut(s)	94, 186
AcuI	CTGAAG	1 cut(s)	563
AfiI	CCNNNNNNNGG	4 cut(s)	42, 220, 520, 525
AgsI	TTSAA	4 cut(s)	82, 551, 632, 668
AjnI	CCWGG	1 cut(s)	404
AloI	GAACNNNNNNTCC	2 cut(s)	40, 72
AluBI	AGCT	6 cut(s)	16, 210, 547, 626, 746, 755
AluI	AGCT	6 cut(s)	16, 210, 547, 626, 746, 755
Alw21I	GWGCWC	1 cut(s)	293
Alw26I	GTCTC	1 cut(s)	569
AlwI	GGATC	3 cut(s)	186, 327, 833
Ama87I	CYCGRG	3 cut(s)	173, 191, 483
Aor13HI	TCCGGA	1 cut(s)	759
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	3 cut(s)	16, 467, 638
ApoI	RAATTY	2 cut(s)	94, 186
Asp700I	GAANNNNTTC	1 cut(s)	200
AspS9I	GGNCC	3 cut(s)	136, 264, 699
AsuC2I	CCSGG	5 cut(s)	174, 175, 192, 193, 262
AsuHPI	GGTGA	3 cut(s)	67, 111, 499
AvaI	CYCGRG	3 cut(s)	173, 191, 483
AvaII	GGWCC	2 cut(s)	136, 699
BanI	GGYRCC	1 cut(s)	274
Bbv12I	GWGCWC	1 cut(s)	293
BbvI	GCAGC	3 cut(s)	3, 454, 625
BceAI	ACGGC	1 cut(s)	262
BcgI	CGANNNNNNTGC	2 cut(s)	692, 726
BciT130I	CCWGG	1 cut(s)	406
BcnI	CCSGG	5 cut(s)	174, 175, 192, 193, 262
BcoDI	GTCTC	1 cut(s)	569
BfmI	CTRYAG	2 cut(s)	250, 468
BglI	GCCNNNNNGGC	1 cut(s)	263
BisI	GCNGC	5 cut(s)	17, 142, 468, 639, 730
BlpI	GCTNAGC	1 cut(s)	509
BlsI	GCNGC	5 cut(s)	18, 143, 469, 640, 731
Bme1390I	CCNGG	6 cut(s)	174, 175, 192, 193, 262, 406
Bme18I	GGWCC	2 cut(s)	136, 699
BmeT110I	CYCGRG	3 cut(s)	173, 191, 483
BmgT120I	GGNCC	3 cut(s)	136, 264, 699
BmiI	GGNNCC	2 cut(s)	265, 276
BmrFI	CCNGG	6 cut(s)	174, 175, 192, 193, 262, 406
BmsI	GCATC	2 cut(s)	484, 694
BpmI	CTGGAG	2 cut(s)	374, 407
Bpu1102I	GCTNAGC	1 cut(s)	509
BpuEI	CTTGAG	1 cut(s)	73
BpuMI	CCSGG	5 cut(s)	174, 175, 192, 193, 262
BsaJI	CCNNGG	7 cut(s)	153, 173, 174, 191, 261, 315, 519
BsaWI	WCCGGW	1 cut(s)	759
BsaXI	ACNNNNNCTCC	6 cut(s)	40, 70, 347, 377, 380, 410
Bsc4I	CCNNNNNNNGG	4 cut(s)	42, 220, 520, 525
Bse1I	ACTGG	1 cut(s)	357
BseAI	TCCGGA	1 cut(s)	759
BseBI	CCWGG	1 cut(s)	406
BseDI	CCNNGG	7 cut(s)	153, 173, 174, 191, 261, 315, 519
BseGI	GGATG	3 cut(s)	385, 565, 664
BseLI	CCNNNNNNNGG	4 cut(s)	42, 220, 520, 525
BseMII	CTCAG	3 cut(s)	594, 662, 686
BseNI	ACTGG	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	15
BseXI	GCAGC	3 cut(s)	3, 454, 625
BsgI	GTGCAG	1 cut(s)	404
BshFI	GGCC	1 cut(s)	266
BshNI	GGYRCC	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	293
BsiHKCI	CYCGRG	3 cut(s)	173, 191, 483
BsiSI	CCGG	5 cut(s)	43, 174, 192, 261, 760
BslI	CCNNNNNNNGG	4 cut(s)	42, 220, 520, 525
BsmAI	GTCTC	1 cut(s)	569
BsmI	GAATGC	1 cut(s)	306
BsnI	GGCC	1 cut(s)	266
BsoBI	CYCGRG	3 cut(s)	173, 191, 483
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp13I	TCCGGA	1 cut(s)	759
Bsp143I	GATC	5 cut(s)	178, 319, 382, 427, 825
Bsp1720I	GCTNAGC	1 cut(s)	509
BspACI	CCGC	7 cut(s)	33, 108, 139, 142, 221, 502, 730
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	3 cut(s)	595, 661, 685
BspEI	TCCGGA	1 cut(s)	759
BspLI	GGNNCC	2 cut(s)	265, 276
BspMAI	CTGCAG	2 cut(s)	254, 472
BspPI	GGATC	3 cut(s)	186, 327, 833
BspT107I	GGYRCC	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	357
BssECI	CCNNGG	7 cut(s)	153, 173, 174, 191, 261, 315, 519
BssMI	GATC	5 cut(s)	178, 319, 382, 427, 825
BssT1I	CCWWGG	2 cut(s)	153, 519
Bst2UI	CCWGG	1 cut(s)	406
Bst4CI	ACNGT	3 cut(s)	274, 477, 836
Bst6I	CTCTTC	2 cut(s)	567, 627
BstC8I	GCNNGC	3 cut(s)	21, 506, 515
BstDEI	CTNAG	6 cut(s)	237, 509, 603, 648, 672, 821
BstDSI	CCRYGG	1 cut(s)	315
BstENI	CCTNNNNNAGG	1 cut(s)	523
BstF5I	GGATG	3 cut(s)	385, 565, 664
BstKTI	GATC	5 cut(s)	181, 322, 385, 430, 828
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	5 cut(s)	178, 319, 382, 427, 825
BstMWI	GCNNNNNNNGC	6 cut(s)	227, 249, 263, 510, 514, 752
BstNI	CCWGG	1 cut(s)	406
BstNSI	RCATGY	1 cut(s)	541
BstSCI	CCNGG	6 cut(s)	172, 173, 190, 191, 260, 404
BstSFI	CTRYAG	2 cut(s)	250, 468
BstV1I	GCAGC	3 cut(s)	3, 454, 625
BstX2I	RGATCY	1 cut(s)	825
BstYI	RGATCY	1 cut(s)	825
BsuRI	GGCC	1 cut(s)	266
BtgI	CCRYGG	1 cut(s)	315
BtsCI	GGATG	3 cut(s)	385, 565, 664
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	2 cut(s)	259, 841
Cac8I	GCNNGC	3 cut(s)	21, 506, 515
Cfr13I	GGNCC	3 cut(s)	136, 264, 699
Cfr9I	CCCGGG	2 cut(s)	173, 191
CpoI	CGGWCCG	1 cut(s)	136
CseI	GACGC	1 cut(s)	242
CspI	CGGWCCG	1 cut(s)	136
CviAII	CATG	1 cut(s)	538
DdeI	CTNAG	6 cut(s)	237, 509, 603, 648, 672, 821
DpnI	GATC	5 cut(s)	180, 321, 384, 429, 827
DpnII	GATC	5 cut(s)	178, 319, 382, 427, 825
Eam1104I	CTCTTC	2 cut(s)	567, 627
EarI	CTCTTC	2 cut(s)	567, 627
EciI	GGCGGA	2 cut(s)	22, 236
Eco130I	CCWWGG	2 cut(s)	153, 519
Eco47I	GGWCC	2 cut(s)	136, 699
Eco57I	CTGAAG	1 cut(s)	563
Eco88I	CYCGRG	3 cut(s)	173, 191, 483
EcoNI	CCTNNNNNAGG	1 cut(s)	523
EcoRI	GAATTC	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	404
EcoT14I	CCWWGG	2 cut(s)	153, 519
EcoT22I	ATGCAT	1 cut(s)	499
ErhI	CCWWGG	2 cut(s)	153, 519
FaeI	CATG	1 cut(s)	541
FaiI	YATR	8 cut(s)	366, 399, 438, 465, 499, 539, 726, 777
FalI	AAGNNNNNCTT	4 cut(s)	564, 596, 794, 826
FatI	CATG	1 cut(s)	537
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	5 cut(s)	17, 142, 468, 639, 730
FokI	GGATG	3 cut(s)	392, 572, 671
Fsp4HI	GCNGC	5 cut(s)	17, 142, 468, 639, 730
GluI	GCNGC	5 cut(s)	17, 142, 468, 639, 730
GsuI	CTGGAG	2 cut(s)	374, 407
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	5 cut(s)	43, 174, 192, 261, 760
HgaI	GACGC	1 cut(s)	242
Hin1II	CATG	1 cut(s)	541
HindIII	AAGCTT	1 cut(s)	545
HinfI	GANTC	3 cut(s)	587, 644, 664
HpaII	CCGG	5 cut(s)	43, 174, 192, 261, 760
HphI	GGTGA	3 cut(s)	67, 111, 499
Hpy188I	TCNGA	7 cut(s)	60, 342, 448, 586, 592, 675, 703
Hpy188III	TCNNGA	4 cut(s)	90, 386, 760, 843
Hpy99I	CGWCG	2 cut(s)	64, 236
HpyAV	CCTTC	3 cut(s)	88, 445, 545
HpyCH4III	ACNGT	3 cut(s)	274, 477, 836
HpyCH4V	TGCA	6 cut(s)	252, 306, 421, 470, 497, 713
HpyF10VI	GCNNNNNNNGC	6 cut(s)	227, 249, 263, 510, 514, 752
HpyF3I	CTNAG	6 cut(s)	237, 509, 603, 648, 672, 821
Hsp92II	CATG	1 cut(s)	541
Kpn2I	TCCGGA	1 cut(s)	759
Kzo9I	GATC	5 cut(s)	178, 319, 382, 427, 825
LmnI	GCTCC	2 cut(s)	28, 215
Lsp1109I	GCAGC	3 cut(s)	3, 454, 625
LweI	GCATC	2 cut(s)	484, 694
MalI	GATC	5 cut(s)	180, 321, 384, 429, 827
MboI	GATC	5 cut(s)	178, 319, 382, 427, 825
MboII	GAAGA	3 cut(s)	581, 584, 644
MflI	RGATCY	1 cut(s)	825
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	3 cut(s)	82, 94, 186
MlyI	GAGTC	1 cut(s)	638
MmeI	TCCRAC	2 cut(s)	83, 309
MnlI	CCTC	6 cut(s)	36, 97, 217, 268, 382, 628
Mph1103I	ATGCAT	1 cut(s)	499
MroI	TCCGGA	1 cut(s)	759
MroXI	GAANNNNTTC	1 cut(s)	200
MspI	CCGG	5 cut(s)	43, 174, 192, 261, 760
MspR9I	CCNGG	6 cut(s)	174, 175, 192, 193, 262, 406
Mva1269I	GAATGC	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	406
MwoI	GCNNNNNNNGC	6 cut(s)	227, 249, 263, 510, 514, 752
NciI	CCSGG	5 cut(s)	174, 175, 192, 193, 262
NdeII	GATC	5 cut(s)	178, 319, 382, 427, 825
NlaIII	CATG	1 cut(s)	541
NlaIV	GGNNCC	2 cut(s)	265, 276
NsiI	ATGCAT	1 cut(s)	499
NspI	RCATGY	1 cut(s)	541
PctI	GAATGC	1 cut(s)	306
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	2 cut(s)	587, 664
PflMI	CCANNNNNTGG	1 cut(s)	520
PkrI	GCNGC	5 cut(s)	18, 143, 469, 640, 731
PleI	GAGTC	1 cut(s)	638
PpsI	GAGTC	1 cut(s)	638
Psp6I	CCWGG	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	404
PspN4I	GGNNCC	2 cut(s)	265, 276
PspPI	GGNCC	3 cut(s)	136, 264, 699
PstI	CTGCAG	2 cut(s)	254, 472
PsuI	RGATCY	1 cut(s)	825
Rsr2I	CGGWCCG	1 cut(s)	136
RsrII	CGGWCCG	1 cut(s)	136
SatI	GCNGC	5 cut(s)	17, 142, 468, 639, 730
Sau3AI	GATC	5 cut(s)	178, 319, 382, 427, 825
Sau96I	GGNCC	3 cut(s)	136, 264, 699
SchI	GAGTC	1 cut(s)	638
ScrFI	CCNGG	6 cut(s)	174, 175, 192, 193, 262, 406
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	8 cut(s)	18, 80, 212, 549, 556, 628, 748, 757
SfaNI	GCATC	2 cut(s)	484, 694
SfcI	CTRYAG	2 cut(s)	250, 468
SinI	GGWCC	2 cut(s)	136, 699
SmaI	CCCGGG	2 cut(s)	175, 193
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
Sse9I	AATT	3 cut(s)	82, 94, 186
SsiI	CCGC	7 cut(s)	33, 108, 139, 142, 221, 502, 730
StyD4I	CCNGG	6 cut(s)	172, 173, 190, 191, 260, 404
StyI	CCWWGG	2 cut(s)	153, 519
TaaI	ACNGT	3 cut(s)	274, 477, 836
TaqI	TCGA	1 cut(s)	5
TasI	AATT	3 cut(s)	82, 94, 186
TauI	GCSGC	2 cut(s)	144, 732
TfiI	GAWTC	2 cut(s)	587, 664
TscAI	CASTG	2 cut(s)	259, 841
TseI	GCWGC	3 cut(s)	16, 467, 638
TspDTI	ATGAA	5 cut(s)	425, 582, 692, 713, 804
TspGWI	ACGGA	1 cut(s)	149
TspMI	CCCGGG	2 cut(s)	173, 191
TspRI	CASTG	2 cut(s)	259, 841
Van91I	CCANNNNNTGG	1 cut(s)	520
VpaK11BI	GGWCC	2 cut(s)	136, 699
XagI	CCTNNNNNAGG	1 cut(s)	523
XapI	RAATTY	2 cut(s)	94, 186
XceI	RCATGY	1 cut(s)	541
XmaI	CCCGGG	2 cut(s)	173, 191
XmnI	GAANNNNTTC	1 cut(s)	200
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.