Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00072

Orthogroup ID

OG0004741

Physical Location & Seq

Genomic Coordinates Forward (+)

209486 .. 212552

Gene Structure 3067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G002330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTCGAAGAAGAAGCTACTGACTCCTCTCTCCTCTCTTCTCCTCCTCCGACGAACCCTAACTTCCACCCTTCATTTCTCAATCCCACACTTGCAATCCCGCACCAATTTCTCCCCCAATATCGAAAAGCTCCGCCCCCTTTTCCCGCTCCCCGGATTTGATTTTCCCGGCAAATCTTTCATCTCCTCCCAATTTGGGGACAAACCCAATTCCGCCCACTGCTGGAACTGCAGCGCTGCCGCTCGAACGACGCCGTTTCTGCTCTGCTTCTCCTGTCGGTGCATCCAACCCGTCGATCACTCCGTCGATTACTTTCAGATATTTGGACTGAAGTATGACAGTGTGGAGGAACATCTGGAGGGAAAATATAAGGACTTCTTCAAAATCAGAGAGTACGCTGCTGAACAGTCTGCTCACGTGATTGATGCATACCGCACGCTTAGCAAGCCCTTGGCGAGGGCAATATATATTCTGAAGCTTGAAGGCGTAGACATCGATGAAGAAGAGACACTTTCAGACTTAGATTTGTTAAGTGAGGGAAGCTGTGAAGAGGCTCCCAACTCTCAGGCTTTAAATCAGATTCAGTCTCTGATGCAAGAGAAACTGAAGCAGTGGTCTAATTCTTTTGCCGAGGCATTTGAAAGCCGGAACTTTGAAGAAGCCGTAAAAGCTATCCGGCGAATGACTTACTATGAGCGTGTAAATGAAGAAATTGTAAAGAGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ HSCB_C

Protein Analysis

242

Amino Acids

27.86

Weight (kDa)

6.33

Isoelectric Point (pI)

52.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSCB_C	PF07743	183 - 238	2.2e-09	HSCB C-terminal oligomerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06410
fragaria_vesca	FvH4_6g20780 FvH4_6g20780 FvH4_6g20780 FvH4_6g20780 FvH4_6g20780
malus_domestica	MD12G1044000.v1.1 MD14G1043000.v1.1
prunus_persica	Prupe.7G091100_v2.0.a1
pyrus_communis	pycom14g03660
rosa_chinensis	RchiOBHm_Chr3g0476751 RchiOBHm_Chr3g0476781
rosa_laevigata	RLG00000023752 RLG00000023754
rosa_multiflora	Rmu_sc0002399.1_g000008 Rmu_sc0008085.1_g000012 Rmu_sc0042226.1_g000001
rosa_roxburghii	Rroxscaffold_6G00405030
rosa_rugosa	Rorug03G0156700 Rorug03G0156800 Rorug03G0156900
rosa_samantha	Rh3AG206900 Rh3AG207100 Rh3BG239500 Rh3BG239600 Rh3CG233400 Rh3CG233500 Rh3DG233300
rosa_wichuraiana	Rw0G002330 Rw3G018830 Rw3G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	148, 242
AccI	GTMKAC	1 cut(s)	489
AciI	CCGC	6 cut(s)	100, 133, 146, 213, 240, 433
AcuI	CTGAAG	3 cut(s)	350, 494, 626
AcvI	CACGTG	1 cut(s)	418
AcyI	GRCGYC	1 cut(s)	251
AfaI	GTAC	1 cut(s)	395
AfeI	AGCGCT	1 cut(s)	235
AfiI	CCNNNNNNNGG	5 cut(s)	152, 195, 196, 222, 456
AgsI	TTSAA	4 cut(s)	382, 482, 641, 656
AluBI	AGCT	5 cut(s)	16, 130, 478, 543, 671
AluI	AGCT	5 cut(s)	16, 130, 478, 543, 671
Alw26I	GTCTC	2 cut(s)	500, 591
AlwNI	CAGNNNCTG	1 cut(s)	589
Aor51HI	AGCGCT	1 cut(s)	235
ApeKI	GCWGC	3 cut(s)	231, 236, 398
AspLEI	GCGC	1 cut(s)	236
AsuC2I	CCSGG	2 cut(s)	153, 168
BbrPI	CACGTG	1 cut(s)	418
BbvI	GCAGC	3 cut(s)	223, 243, 385
BceAI	ACGGC	2 cut(s)	238, 647
BcnI	CCSGG	2 cut(s)	153, 168
BcoDI	GTCTC	2 cut(s)	500, 591
BfmI	CTRYAG	1 cut(s)	229
BfoI	RGCGCY	1 cut(s)	237
BisI	GCNGC	4 cut(s)	232, 237, 240, 399
BlpI	GCTNAGC	1 cut(s)	440
BlsI	GCNGC	4 cut(s)	233, 238, 241, 400
Bme1390I	CCNGG	2 cut(s)	153, 168
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	2 cut(s)	153, 168
BmsI	GCATC	3 cut(s)	291, 415, 582
BpmI	CTGGAG	1 cut(s)	377
Bpu1102I	GCTNAGC	1 cut(s)	440
BpuMI	CCSGG	2 cut(s)	153, 168
Bsa29I	ATCGAT	1 cut(s)	495
BsaAI	YACGTR	1 cut(s)	418
BsaHI	GRCGYC	1 cut(s)	251
BsaJI	CCNNGG	3 cut(s)	151, 450, 630
Bsc4I	CCNNNNNNNGG	5 cut(s)	152, 195, 196, 222, 456
BseCI	ATCGAT	1 cut(s)	495
BseDI	CCNNGG	3 cut(s)	151, 450, 630
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	5 cut(s)	152, 195, 196, 222, 456
BseMII	CTCAG	1 cut(s)	578
BseRI	GAGGAG	5 cut(s)	15, 22, 32, 35, 175
BseXI	GCAGC	3 cut(s)	223, 243, 385
BshVI	ATCGAT	1 cut(s)	495
BsiSI	CCGG	4 cut(s)	153, 168, 646, 676
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	5 cut(s)	152, 195, 196, 222, 456
BsmAI	GTCTC	2 cut(s)	500, 591
BsmFI	GGGAC	1 cut(s)	212
Bsp143I	GATC	1 cut(s)	295
Bsp1720I	GCTNAGC	1 cut(s)	440
BspACI	CCGC	6 cut(s)	100, 133, 146, 213, 240, 433
BspCNI	CTCAG	1 cut(s)	577
BspDI	ATCGAT	1 cut(s)	495
BspLI	GGNNCC	1 cut(s)	555
BspMAI	CTGCAG	1 cut(s)	233
BsrBI	CCGCTC	2 cut(s)	148, 242
BssECI	CCNNGG	3 cut(s)	151, 450, 630
BssMI	GATC	1 cut(s)	295
BssNI	GRCGYC	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	450
Bst4CI	ACNGT	2 cut(s)	341, 408
Bst6I	CTCTTC	3 cut(s)	42, 498, 543
BstACI	GRCGYC	1 cut(s)	251
BstBAI	YACGTR	1 cut(s)	418
BstC8I	GCNNGC	2 cut(s)	437, 446
BstDEI	CTNAG	3 cut(s)	440, 520, 564
BstENI	CCTNNNNNAGG	1 cut(s)	454
BstF5I	GGATG	1 cut(s)	282
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	2 cut(s)	500, 591
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	5 cut(s)	228, 259, 441, 445, 668
BstSCI	CCNGG	2 cut(s)	151, 166
BstSFI	CTRYAG	1 cut(s)	229
BstV1I	GCAGC	3 cut(s)	223, 243, 385
Bsu15I	ATCGAT	1 cut(s)	495
BsuTUI	ATCGAT	1 cut(s)	495
BtsCI	GGATG	1 cut(s)	282
BtsI	GCAGTG	2 cut(s)	217, 617
BtsIMutI	CAGTG	3 cut(s)	217, 346, 617
Cac8I	GCNNGC	2 cut(s)	437, 446
CaiI	CAGNNNCTG	1 cut(s)	589
CfoI	GCGC	1 cut(s)	236
ClaI	ATCGAT	1 cut(s)	495
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	394
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	3 cut(s)	440, 520, 564
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
DraI	TTTAAA	1 cut(s)	573
Eam1104I	CTCTTC	3 cut(s)	42, 498, 543
EarI	CTCTTC	3 cut(s)	42, 498, 543
EciI	GGCGGA	2 cut(s)	122, 202
Eco130I	CCWWGG	1 cut(s)	450
Eco47III	AGCGCT	1 cut(s)	235
Eco57I	CTGAAG	3 cut(s)	350, 494, 626
Eco72I	CACGTG	1 cut(s)	418
EcoNI	CCTNNNNNAGG	1 cut(s)	454
EcoT14I	CCWWGG	1 cut(s)	450
EcoT22I	ATGCAT	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	450
FaiI	YATR	6 cut(s)	336, 369, 430, 466, 468, 693
FalI	AAGNNNNNCTT	4 cut(s)	362, 394, 495, 527
FaqI	GGGAC	1 cut(s)	212
FauI	CCCGC	2 cut(s)	107, 153
FblI	GTMKAC	1 cut(s)	489
Fnu4HI	GCNGC	4 cut(s)	232, 237, 240, 399
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	4 cut(s)	232, 237, 240, 399
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	4 cut(s)	232, 237, 240, 399
GsuI	CTGGAG	1 cut(s)	377
HaeII	RGCGCY	1 cut(s)	237
HapII	CCGG	4 cut(s)	153, 168, 646, 676
HgaI	GACGC	1 cut(s)	259
HhaI	GCGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	251
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	2 cut(s)	22, 580
HpaII	CCGG	4 cut(s)	153, 168, 646, 676
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	7 cut(s)	50, 318, 389, 474, 517, 579, 591
Hpy188III	TCNNGA	1 cut(s)	356
Hpy8I	GTNNAC	1 cut(s)	490
Hpy99I	CGWCG	4 cut(s)	54, 253, 296, 308
HpyAV	CCTTC	2 cut(s)	80, 476
HpyCH4III	ACNGT	2 cut(s)	341, 408
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	5 cut(s)	94, 231, 282, 428, 595
HpyF10VI	GCNNNNNNNGC	5 cut(s)	228, 259, 441, 445, 668
HpyF3I	CTNAG	3 cut(s)	440, 520, 564
HpySE526I	ACGT	1 cut(s)	417
Hsp92I	GRCGYC	1 cut(s)	251
HspAI	GCGC	1 cut(s)	234
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	3 cut(s)	135, 153, 559
LpnPI	CCDG	8 cut(s)	166, 181, 208, 286, 341, 551, 659, 689
Lsp1109I	GCAGC	3 cut(s)	223, 243, 385
LweI	GCATC	3 cut(s)	291, 415, 582
MaeII	ACGT	1 cut(s)	417
MalI	GATC	1 cut(s)	297
MbiI	CCGCTC	2 cut(s)	148, 242
MboI	GATC	1 cut(s)	295
MboII	GAAGA	9 cut(s)	19, 22, 29, 370, 512, 515, 560, 668, 719
MluCI	AATT	5 cut(s)	106, 191, 208, 619, 711
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	2 cut(s)	73, 310
Mph1103I	ATGCAT	1 cut(s)	430
MseI	TTAA	2 cut(s)	530, 572
MspI	CCGG	4 cut(s)	153, 168, 646, 676
MspR9I	CCNGG	2 cut(s)	153, 168
MwoI	GCNNNNNNNGC	5 cut(s)	228, 259, 441, 445, 668
NciI	CCSGG	2 cut(s)	153, 168
NdeII	GATC	1 cut(s)	295
NlaIV	GGNNCC	1 cut(s)	555
NmeAIII	GCCGAG	1 cut(s)	655
NsiI	ATGCAT	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	580
PkrI	GCNGC	4 cut(s)	233, 238, 241, 400
PleI	GAGTC	1 cut(s)	16
PmaCI	CACGTG	1 cut(s)	418
PmlI	CACGTG	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	16
Ppu21I	YACGTR	1 cut(s)	418
PspCI	CACGTG	1 cut(s)	418
PspN4I	GGNNCC	1 cut(s)	555
PstI	CTGCAG	1 cut(s)	233
PstNI	CAGNNNCTG	1 cut(s)	589
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SaqAI	TTAA	2 cut(s)	530, 572
SatI	GCNGC	4 cut(s)	232, 237, 240, 399
Sau3AI	GATC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	153, 168
SetI	ASST	6 cut(s)	18, 132, 420, 480, 545, 673
SfaNI	GCATC	3 cut(s)	291, 415, 582
SfcI	CTRYAG	1 cut(s)	229
Sse9I	AATT	5 cut(s)	106, 191, 208, 619, 711
SsiI	CCGC	6 cut(s)	100, 133, 146, 213, 240, 433
StyD4I	CCNGG	2 cut(s)	151, 166
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	2 cut(s)	341, 408
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	6 cut(s)	5, 123, 244, 294, 306, 495
TasI	AATT	5 cut(s)	106, 191, 208, 619, 711
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	2 cut(s)	530, 572
Tru9I	TTAA	2 cut(s)	530, 572
TscAI	CASTG	3 cut(s)	224, 346, 617
TseI	GCWGC	3 cut(s)	231, 236, 398
TspDTI	ATGAA	4 cut(s)	62, 169, 513, 720
TspGWI	ACGGA	1 cut(s)	292
TspRI	CASTG	3 cut(s)	224, 346, 617
XagI	CCTNNNNNAGG	1 cut(s)	454
XmiI	GTMKAC	1 cut(s)	489
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.