Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002399.1

Orthogroup ID

OG0004741

Physical Location & Seq

Genomic Coordinates Reverse (-)

28904 .. 32884

Gene Structure 3981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002399.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atgtcgaagacgaagctactgactcctctctcctctcttctcctcctccgacgaaccctaacttccacccctcatttctcaatcccacacttgcaatcccgcaccaatttctcccccaatatcgaaaagctccgcccccttttcccgctccccggatttgattttcccggcaaatctttcgtctcctcccaatttggggacaaacccaattccgcccactgctggaactgcagcgctgccgctcgaacgacgccgtttctgctctgctcctcctgtcggtgcatccaaccccttgatcactccgtcgattactttcagatatttggactggagaggaagtatgatagtgtggaggaacatctggagggaaaatataaggattggcagaaaaagttgcaccctgatcttgttcattcaaaatcagagaaggagagagagtacgctgctgaacagtctgctcgcgtgattgatgcataccgcacgcttagcaagcccttggcgagggcaatatatattctgaagcttgaaggtgtagacatcgatgaagaagagacactttcagacttagatttgttaagtgagatgcaagagaaactgaagcagtggtctaattcttttgccgaggcatttgaaagccggaactttgaagaagctgtaaaagctatccggcgaatgacttactatgagcgttgcatgagccttccatcttctctacttcacagttcacaatcattgtactcctctcaggttgccaccttttcttttctgcttatggcgtctcaaccaccttctccgtctgatcaccccaaatcacctccttctcctaatgcccctcccaacttgcatcctataaccggaaccctttggggaaggttcaagtcatcatgctccatcatctcctccagattatcatcaaacaaatcacaatcagtctctattcatggcccatcggggacattattctattccatttattgctcctccaccagtggtggaacttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ HSCB_C

Protein Analysis

334

Amino Acids

37.52

Weight (kDa)

8.53

Isoelectric Point (pI)

59.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06410
fragaria_vesca	FvH4_6g20780 FvH4_6g20780 FvH4_6g20780 FvH4_6g20780 FvH4_6g20780
malus_domestica	MD12G1044000.v1.1 MD14G1043000.v1.1
prunus_persica	Prupe.7G091100_v2.0.a1
pyrus_communis	pycom14g03660
rosa_chinensis	RchiOBHm_Chr3g0476751 RchiOBHm_Chr3g0476781
rosa_laevigata	RLG00000023752 RLG00000023754
rosa_multiflora	Rmu_sc0002399.1_g000008 Rmu_sc0008085.1_g000012 Rmu_sc0042226.1_g000001
rosa_roxburghii	Rroxscaffold_6G00405030
rosa_rugosa	Rorug03G0156700 Rorug03G0156800 Rorug03G0156900
rosa_samantha	Rh3AG206900 Rh3AG207100 Rh3BG239500 Rh3BG239600 Rh3CG233400 Rh3CG233500 Rh3DG233300
rosa_wichuraiana	Rw0G002330 Rw3G018830 Rw3G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	148, 242
AccI	GTMKAC	1 cut(s)	534
AccII	CGCG	1 cut(s)	462
AciI	CCGC	6 cut(s)	100, 133, 146, 213, 240, 478
AcuI	CTGAAG	2 cut(s)	539, 617
AcyI	GRCGYC	2 cut(s)	251, 776
AfaI	GTAC	2 cut(s)	440, 737
AfeI	AGCGCT	1 cut(s)	235
AfiI	CCNNNNNNNGG	7 cut(s)	152, 195, 196, 222, 276, 501, 854
AgsI	TTSAA	5 cut(s)	417, 527, 632, 647, 877
AluBI	AGCT	5 cut(s)	16, 130, 523, 653, 662
AluI	AGCT	5 cut(s)	16, 130, 523, 653, 662
Alw26I	GTCTC	4 cut(s)	187, 545, 783, 937
Aor51HI	AGCGCT	1 cut(s)	235
AoxI	GGCC	1 cut(s)	943
ApeKI	GCWGC	3 cut(s)	231, 236, 443
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	944
AsuC2I	CCSGG	2 cut(s)	153, 168
AsuHPI	GGTGA	2 cut(s)	794, 804
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	3 cut(s)	223, 243, 430
BccI	CCATC	3 cut(s)	712, 899, 955
BceAI	ACGGC	1 cut(s)	238
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BclI	TGATCA	2 cut(s)	295, 799
BcnI	CCSGG	2 cut(s)	153, 168
BcoDI	GTCTC	4 cut(s)	187, 545, 783, 937
BfmI	CTRYAG	1 cut(s)	229
BfoI	RGCGCY	1 cut(s)	237
BisI	GCNGC	4 cut(s)	232, 237, 240, 444
BlpI	GCTNAGC	1 cut(s)	485
BlsI	GCNGC	4 cut(s)	233, 238, 241, 445
Bme1390I	CCNGG	2 cut(s)	153, 168
BmgT120I	GGNCC	1 cut(s)	944
BmiI	GGNNCC	1 cut(s)	859
BmrFI	CCNGG	2 cut(s)	153, 168
BmsI	GCATC	4 cut(s)	291, 460, 573, 853
BpiI	GAAGAC	1 cut(s)	14
BpmI	CTGGAG	3 cut(s)	350, 383, 886
Bpu1102I	GCTNAGC	1 cut(s)	485
BpuMI	CCSGG	2 cut(s)	153, 168
Bsa29I	ATCGAT	1 cut(s)	540
BsaBI	GATNNNNATC	1 cut(s)	910
BsaHI	GRCGYC	2 cut(s)	251, 776
BsaJI	CCNNGG	3 cut(s)	151, 495, 621
BsaWI	WCCGGW	1 cut(s)	854
BsaXI	ACNNNNNCTCC	4 cut(s)	323, 353, 422, 452
Bsc4I	CCNNNNNNNGG	7 cut(s)	152, 195, 196, 222, 276, 501, 854
Bse1I	ACTGG	2 cut(s)	333, 987
Bse8I	GATNNNNATC	1 cut(s)	910
BseCI	ATCGAT	1 cut(s)	540
BseDI	CCNNGG	3 cut(s)	151, 495, 621
BseGI	GGATG	2 cut(s)	282, 844
BseJI	GATNNNNATC	1 cut(s)	910
BseLI	CCNNNNNNNGG	7 cut(s)	152, 195, 196, 222, 276, 501, 854
BseMII	CTCAG	1 cut(s)	758
BseNI	ACTGG	2 cut(s)	333, 987
BseRI	GAGGAG	9 cut(s)	15, 22, 32, 35, 175, 259, 730, 889, 970
BseXI	GCAGC	3 cut(s)	223, 243, 430
Bsh1236I	CGCG	1 cut(s)	462
BshFI	GGCC	1 cut(s)	945
BshVI	ATCGAT	1 cut(s)	540
BsiSI	CCGG	5 cut(s)	153, 168, 637, 667, 855
BslFI	GGGAC	2 cut(s)	212, 967
BslI	CCNNNNNNNGG	7 cut(s)	152, 195, 196, 222, 276, 501, 854
BsmAI	GTCTC	4 cut(s)	187, 545, 783, 937
BsmBI	CGTCTC	2 cut(s)	187, 783
BsmFI	GGGAC	2 cut(s)	212, 967
BsnI	GGCC	1 cut(s)	945
Bsp143I	GATC	3 cut(s)	295, 403, 799
Bsp1720I	GCTNAGC	1 cut(s)	485
BspACI	CCGC	6 cut(s)	100, 133, 146, 213, 240, 478
BspANI	GGCC	1 cut(s)	945
BspCNI	CTCAG	1 cut(s)	757
BspDI	ATCGAT	1 cut(s)	540
BspFNI	CGCG	1 cut(s)	462
BspLI	GGNNCC	1 cut(s)	859
BspMAI	CTGCAG	1 cut(s)	233
BsrBI	CCGCTC	2 cut(s)	148, 242
BsrI	ACTGG	2 cut(s)	333, 987
BssECI	CCNNGG	3 cut(s)	151, 495, 621
BssMI	GATC	3 cut(s)	295, 403, 799
BssNI	GRCGYC	2 cut(s)	251, 776
BssT1I	CCWWGG	1 cut(s)	495
Bst4CI	ACNGT	2 cut(s)	453, 722
Bst6I	CTCTTC	2 cut(s)	42, 543
BstACI	GRCGYC	2 cut(s)	251, 776
BstC8I	GCNNGC	3 cut(s)	460, 482, 491
BstDEI	CTNAG	3 cut(s)	485, 565, 744
BstENI	CCTNNNNNAGG	1 cut(s)	499
BstF5I	GGATG	2 cut(s)	282, 844
BstFNI	CGCG	1 cut(s)	462
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	3 cut(s)	298, 406, 802
BstMAI	GTCTC	4 cut(s)	187, 545, 783, 937
BstMBI	GATC	3 cut(s)	295, 403, 799
BstMWI	GCNNNNNNNGC	5 cut(s)	228, 259, 486, 490, 659
BstSCI	CCNGG	2 cut(s)	151, 166
BstSFI	CTRYAG	1 cut(s)	229
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	3 cut(s)	223, 243, 430
BstV2I	GAAGAC	1 cut(s)	14
Bsu15I	ATCGAT	1 cut(s)	540
BsuRI	GGCC	1 cut(s)	945
BsuTUI	ATCGAT	1 cut(s)	540
BtsCI	GGATG	2 cut(s)	282, 844
BtsI	GCAGTG	2 cut(s)	217, 608
BtsIMutI	CAGTG	3 cut(s)	217, 608, 994
Cac8I	GCNNGC	3 cut(s)	460, 482, 491
CfoI	GCGC	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	944
ClaI	ATCGAT	1 cut(s)	540
CseI	GACGC	2 cut(s)	259, 765
Csp6I	GTAC	2 cut(s)	439, 736
CviAII	CATG	3 cut(s)	694, 885, 941
CviJI	RGCY	9 cut(s)	16, 130, 493, 523, 636, 653, 662, 699, 945
CviKI_1	RGCY	9 cut(s)	16, 130, 493, 523, 636, 653, 662, 699, 945
CviQI	GTAC	2 cut(s)	439, 736
DdeI	CTNAG	3 cut(s)	485, 565, 744
DpnI	GATC	3 cut(s)	297, 405, 801
DpnII	GATC	3 cut(s)	295, 403, 799
Eam1104I	CTCTTC	2 cut(s)	42, 543
EarI	CTCTTC	2 cut(s)	42, 543
EciI	GGCGGA	2 cut(s)	122, 202
Eco130I	CCWWGG	1 cut(s)	495
Eco47III	AGCGCT	1 cut(s)	235
Eco57I	CTGAAG	2 cut(s)	539, 617
EcoNI	CCTNNNNNAGG	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	495
EcoT22I	ATGCAT	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	495
Esp3I	CGTCTC	2 cut(s)	187, 783
FaeI	CATG	3 cut(s)	697, 888, 944
FalI	AAGNNNNNCTT	2 cut(s)	540, 572
FaqI	GGGAC	2 cut(s)	212, 967
FatI	CATG	3 cut(s)	693, 884, 940
FauI	CCCGC	2 cut(s)	107, 153
FbaI	TGATCA	2 cut(s)	295, 799
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	4 cut(s)	232, 237, 240, 444
FokI	GGATG	2 cut(s)	269, 831
Fsp4HI	GCNGC	4 cut(s)	232, 237, 240, 444
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	4 cut(s)	232, 237, 240, 444
GsuI	CTGGAG	3 cut(s)	350, 383, 886
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	945
HapII	CCGG	5 cut(s)	153, 168, 637, 667, 855
HgaI	GACGC	2 cut(s)	259, 765
HhaI	GCGC	1 cut(s)	236
Hin1I	GRCGYC	2 cut(s)	251, 776
Hin1II	CATG	3 cut(s)	697, 888, 944
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HindIII	AAGCTT	1 cut(s)	521
HinfI	GANTC	1 cut(s)	22
HpaII	CCGG	5 cut(s)	153, 168, 637, 667, 855
HphI	GGTGA	2 cut(s)	794, 804
Hpy166II	GTNNAC	2 cut(s)	535, 725
Hpy188I	TCNGA	6 cut(s)	50, 318, 424, 519, 562, 799
Hpy188III	TCNNGA	3 cut(s)	362, 903, 1002
Hpy8I	GTNNAC	2 cut(s)	535, 725
Hpy99I	CGWCG	3 cut(s)	54, 253, 308
HpyAV	CCTTC	6 cut(s)	421, 521, 710, 798, 828, 864
HpyCH4III	ACNGT	2 cut(s)	453, 722
HpyCH4V	TGCA	8 cut(s)	94, 231, 282, 397, 473, 586, 693, 844
HpyF10VI	GCNNNNNNNGC	5 cut(s)	228, 259, 486, 490, 659
HpyF3I	CTNAG	3 cut(s)	485, 565, 744
Hsp92I	GRCGYC	2 cut(s)	251, 776
Hsp92II	CATG	3 cut(s)	697, 888, 944
HspAI	GCGC	1 cut(s)	234
Ksp22I	TGATCA	2 cut(s)	295, 799
Kzo9I	GATC	3 cut(s)	295, 403, 799
LmnI	GCTCC	5 cut(s)	135, 153, 272, 893, 983
Lsp1109I	GCAGC	3 cut(s)	223, 243, 430
LweI	GCATC	4 cut(s)	291, 460, 573, 853
MalI	GATC	3 cut(s)	297, 405, 801
MbiI	CCGCTC	2 cut(s)	148, 242
MboI	GATC	3 cut(s)	295, 403, 799
MboII	GAAGA	6 cut(s)	19, 29, 557, 560, 659, 699
MluCI	AATT	4 cut(s)	106, 191, 208, 610
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	2 cut(s)	73, 310
Mph1103I	ATGCAT	1 cut(s)	475
MseI	TTAA	1 cut(s)	575
MspI	CCGG	5 cut(s)	153, 168, 637, 667, 855
MspR9I	CCNGG	2 cut(s)	153, 168
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	5 cut(s)	228, 259, 486, 490, 659
NciI	CCSGG	2 cut(s)	153, 168
NdeII	GATC	3 cut(s)	295, 403, 799
NlaIII	CATG	3 cut(s)	697, 888, 944
NlaIV	GGNNCC	1 cut(s)	859
NmeAIII	GCCGAG	1 cut(s)	646
NsiI	ATGCAT	1 cut(s)	475
PkrI	GCNGC	4 cut(s)	233, 238, 241, 445
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	859
PspPI	GGNCC	1 cut(s)	944
PstI	CTGCAG	1 cut(s)	233
RsaI	GTAC	2 cut(s)	440, 737
RsaNI	GTAC	2 cut(s)	439, 736
SaqAI	TTAA	1 cut(s)	575
SatI	GCNGC	4 cut(s)	232, 237, 240, 444
Sau3AI	GATC	3 cut(s)	295, 403, 799
Sau96I	GGNCC	1 cut(s)	944
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	153, 168
SfaNI	GCATC	4 cut(s)	291, 460, 573, 853
SfcI	CTRYAG	1 cut(s)	229
Sse9I	AATT	4 cut(s)	106, 191, 208, 610
SsiI	CCGC	6 cut(s)	100, 133, 146, 213, 240, 478
StyD4I	CCNGG	2 cut(s)	151, 166
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	2 cut(s)	453, 722
TaqI	TCGA	5 cut(s)	5, 123, 244, 306, 540
TasI	AATT	4 cut(s)	106, 191, 208, 610
TatI	WGTACW	1 cut(s)	735
TauI	GCSGC	1 cut(s)	242
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TscAI	CASTG	3 cut(s)	224, 608, 994
TseI	GCWGC	3 cut(s)	231, 236, 443
TspDTI	ATGAA	3 cut(s)	401, 558, 929
TspGWI	ACGGA	2 cut(s)	292, 783
TspRI	CASTG	3 cut(s)	224, 608, 994
XagI	CCTNNNNNAGG	1 cut(s)	499
XmiI	GTMKAC	1 cut(s)	534
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.