Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004741

Physical Location & Seq

Genomic Coordinates Reverse (-)

12434222 .. 12437627

Gene Structure 3406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G091100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTCGAACAAACACCTACTTACTTCTCTCTCCTCCGTTCTCCGACGAACCCTAACTCCGACGTCTCATTTCTCATTCAATTCCACCAGGTGGTTTCAATCCGGCACTTTCTTCTCACCCAATGTAAAAACACACCACCGCCTTTTCCCGTGTAGCGGATTGGATTTTCTCGAGATTCACAAAATTCCCGGAAAATGTTTTACCTCCTCCCAATCAGCGGAGAAAGCCAGCGCCAAGTGCTGGAACTGTAGTGCCGCGGCTGAAGCGGTGCCGTTTCTGTTTTGTTCATCTTGTCGGTGCATTCAACCTGTGGATCAGTCGGTGGATTACTTTCAGATATTTGGACTGGAGAGAAAGTATGACAGTGTGGTGGACAATCTGGAGGGAAAGTATAAAGACTGGCAGAAAAAATTGCACCCTGATCTTGTTCATACAAAATCAAAGGAGGAAAGAGAGTATGCTGCTGAACAGTCTGCTAGGGTGATTGATGCATACCTCACACTTAGCAAGCCCTTGGCGAGGGCAATCTACATTTTGAAGCTTGAAGGTGTGGATGTTGATGAAGAAGAGACACTTTCGGAATCAGAGTTGTTAACTGAGATTCTGGAAATCAGGGAAGCTGTTGAAGAAGCTGCTGACTCTCAGGCTTTAGTTCAGATTCAGTCTCAGATGCAAGAGAAACTGAAGCACTGGTCTAACTCTTTTGCAAATGCATTTCGAAGCCGGAACTTTGATGAAGCTCTAAAAGCTATCCGGAGAATGACTTACTATGAGCGTGTAAAAGAAACTATTGTAAAGAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ HSCB_C

Protein Analysis

269

Amino Acids

30.79

Weight (kDa)

7.08

Isoelectric Point (pI)

50.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06410
fragaria_vesca	FvH4_6g20780 FvH4_6g20780 FvH4_6g20780 FvH4_6g20780 FvH4_6g20780
malus_domestica	MD12G1044000.v1.1 MD14G1043000.v1.1
prunus_persica	Prupe.7G091100_v2.0.a1
pyrus_communis	pycom14g03660
rosa_chinensis	RchiOBHm_Chr3g0476751 RchiOBHm_Chr3g0476781
rosa_laevigata	RLG00000023752 RLG00000023754
rosa_multiflora	Rmu_sc0002399.1_g000008 Rmu_sc0008085.1_g000012 Rmu_sc0042226.1_g000001
rosa_roxburghii	Rroxscaffold_6G00405030
rosa_rugosa	Rorug03G0156700 Rorug03G0156800 Rorug03G0156900
rosa_samantha	Rh3AG206900 Rh3AG207100 Rh3BG239500 Rh3BG239600 Rh3CG233400 Rh3CG233500 Rh3DG233300
rosa_wichuraiana	Rw0G002330 Rw3G018830 Rw3G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	268
AccB7I	CCANNNNNTGG	2 cut(s)	90, 240
AccII	CGCG	1 cut(s)	257
AccIII	TCCGGA	1 cut(s)	753
AciI	CCGC	6 cut(s)	139, 156, 218, 255, 257, 266
AclWI	GGATC	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	183
AcuI	CTGAAG	2 cut(s)	282, 704
AcyI	GRCGYC	1 cut(s)	62
AdeI	CACNNNGTG	1 cut(s)	90
AfiI	CCNNNNNNNGG	5 cut(s)	90, 155, 217, 240, 519
AgsI	TTSAA	6 cut(s)	79, 98, 305, 538, 545, 626
AjnI	CCWGG	1 cut(s)	86
AloI	GAACNNNNNNTCC	2 cut(s)	40, 72
AluBI	AGCT	6 cut(s)	541, 620, 632, 740, 749, 802
AluI	AGCT	6 cut(s)	541, 620, 632, 740, 749, 802
Alw26I	GTCTC	3 cut(s)	69, 563, 669
AlwI	GGATC	1 cut(s)	321
Ama87I	CYCGRG	1 cut(s)	170
Aor13HI	TCCGGA	1 cut(s)	753
ApeKI	GCWGC	2 cut(s)	461, 632
ApoI	RAATTY	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	2 cut(s)	108, 493
AsuII	TTCGAA	1 cut(s)	718
AvaI	CYCGRG	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	448, 619
BceAI	ACGGC	1 cut(s)	256
BciT130I	CCWGG	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	189
BcoDI	GTCTC	3 cut(s)	69, 563, 669
BfaI	CTAG	1 cut(s)	477
BfmI	CTRYAG	2 cut(s)	247, 803
BfoI	RGCGCY	1 cut(s)	234
BisI	GCNGC	4 cut(s)	255, 258, 462, 633
BlsI	GCNGC	4 cut(s)	256, 259, 463, 634
Bme1390I	CCNGG	2 cut(s)	88, 189
BmeT110I	CYCGRG	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	2 cut(s)	88, 189
BmsI	GCATC	2 cut(s)	478, 660
BpmI	CTGGAG	2 cut(s)	368, 401
Bpu14I	TTCGAA	1 cut(s)	718
BpuMI	CCSGG	1 cut(s)	189
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	2 cut(s)	255, 513
BsaWI	WCCGGW	1 cut(s)	753
BsaXI	ACNNNNNCTCC	6 cut(s)	40, 70, 341, 371, 374, 404
Bsc4I	CCNNNNNNNGG	5 cut(s)	90, 155, 217, 240, 519
Bse1I	ACTGG	3 cut(s)	351, 404, 695
BseAI	TCCGGA	1 cut(s)	753
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	2 cut(s)	255, 513
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	5 cut(s)	90, 155, 217, 240, 519
BseMII	CTCAG	3 cut(s)	588, 656, 680
BseNI	ACTGG	3 cut(s)	351, 404, 695
BseRI	GAGGAG	2 cut(s)	22, 196
BseXI	GCAGC	2 cut(s)	448, 619
Bsh1236I	CGCG	1 cut(s)	257
BshNI	GGYRCC	1 cut(s)	268
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	4 cut(s)	102, 189, 724, 754
BslI	CCNNNNNNNGG	5 cut(s)	90, 155, 217, 240, 519
BsmAI	GTCTC	3 cut(s)	69, 563, 669
BsmBI	CGTCTC	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	300
BsoBI	CYCGRG	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	718
Bsp13I	TCCGGA	1 cut(s)	753
Bsp143I	GATC	2 cut(s)	313, 421
BspACI	CCGC	6 cut(s)	139, 156, 218, 255, 257, 266
BspCNI	CTCAG	3 cut(s)	589, 655, 679
BspEI	TCCGGA	1 cut(s)	753
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	321
BspT104I	TTCGAA	1 cut(s)	718
BspT107I	GGYRCC	1 cut(s)	268
BsrI	ACTGG	3 cut(s)	351, 404, 695
BssECI	CCNNGG	2 cut(s)	255, 513
BssMI	GATC	2 cut(s)	313, 421
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	3 cut(s)	248, 365, 471
Bst6I	CTCTTC	1 cut(s)	561
BstACI	GRCGYC	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	718
BstC8I	GCNNGC	2 cut(s)	229, 509
BstDEI	CTNAG	4 cut(s)	503, 597, 642, 666
BstDSI	CCRYGG	1 cut(s)	255
BstENI	CCTNNNNNAGG	1 cut(s)	517
BstF5I	GGATG	1 cut(s)	559
BstFNI	CGCG	1 cut(s)	257
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	2 cut(s)	316, 424
BstMAI	GTCTC	3 cut(s)	69, 563, 669
BstMBI	GATC	2 cut(s)	313, 421
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 237, 263, 746
BstNI	CCWGG	1 cut(s)	88
BstSCI	CCNGG	2 cut(s)	86, 187
BstSFI	CTRYAG	2 cut(s)	247, 803
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	2 cut(s)	448, 619
BtgI	CCRYGG	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	559
BtsIMutI	CAGTG	2 cut(s)	370, 688
Cac8I	GCNNGC	2 cut(s)	229, 509
CfoI	GCGC	1 cut(s)	233
Cfr42I	CCGCGG	1 cut(s)	258
CsiI	ACCWGGT	1 cut(s)	86
DdeI	CTNAG	4 cut(s)	503, 597, 642, 666
DpnI	GATC	2 cut(s)	315, 423
DpnII	GATC	2 cut(s)	313, 421
DraIII	CACNNNGTG	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
Eco130I	CCWWGG	1 cut(s)	513
Eco57I	CTGAAG	2 cut(s)	282, 704
Eco88I	CYCGRG	1 cut(s)	170
EcoNI	CCTNNNNNAGG	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	513
EcoT22I	ATGCAT	2 cut(s)	493, 715
ErhI	CCWWGG	1 cut(s)	513
Esp3I	CGTCTC	1 cut(s)	69
FaiI	YATR	6 cut(s)	360, 393, 432, 459, 493, 771
FalI	AAGNNNNNCTT	2 cut(s)	558, 590
Fnu4HI	GCNGC	4 cut(s)	255, 258, 462, 633
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	4 cut(s)	255, 258, 462, 633
FspBI	CTAG	1 cut(s)	477
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	4 cut(s)	255, 258, 462, 633
GsuI	CTGGAG	2 cut(s)	368, 401
HaeII	RGCGCY	1 cut(s)	234
HapII	CCGG	4 cut(s)	102, 189, 724, 754
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	62
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HincII	GTYRAC	1 cut(s)	594
HindII	GTYRAC	1 cut(s)	594
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	5 cut(s)	175, 581, 601, 638, 658
HpaI	GTTAAC	1 cut(s)	594
HpaII	CCGG	4 cut(s)	102, 189, 724, 754
HphI	GGTGA	2 cut(s)	108, 493
Hpy166II	GTNNAC	2 cut(s)	373, 594
Hpy188I	TCNGA	7 cut(s)	44, 60, 336, 580, 586, 657, 669
Hpy188III	TCNNGA	5 cut(s)	170, 172, 380, 605, 754
Hpy8I	GTNNAC	2 cut(s)	373, 594
Hpy99I	CGWCG	2 cut(s)	48, 64
HpyAV	CCTTC	1 cut(s)	539
HpyCH4III	ACNGT	3 cut(s)	248, 365, 471
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	6 cut(s)	300, 415, 491, 673, 707, 713
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 237, 263, 746
HpyF3I	CTNAG	4 cut(s)	503, 597, 642, 666
HpySE526I	ACGT	1 cut(s)	62
Hsp92I	GRCGYC	1 cut(s)	62
HspAI	GCGC	1 cut(s)	231
Kpn2I	TCCGGA	1 cut(s)	753
KspAI	GTTAAC	1 cut(s)	594
KspI	CCGCGG	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	313, 421
Lsp1109I	GCAGC	2 cut(s)	448, 619
LweI	GCATC	2 cut(s)	478, 660
MabI	ACCWGGT	1 cut(s)	86
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	1 cut(s)	62
MalI	GATC	2 cut(s)	315, 423
MboI	GATC	2 cut(s)	313, 421
MboII	GAAGA	4 cut(s)	103, 575, 578, 638
MluCI	AATT	3 cut(s)	79, 183, 410
MlyI	GAGTC	1 cut(s)	632
MmeI	TCCRAC	2 cut(s)	67, 83
MnlI	CCTC	7 cut(s)	43, 214, 217, 376, 439, 506, 513
Mph1103I	ATGCAT	2 cut(s)	493, 715
MroI	TCCGGA	1 cut(s)	753
MseI	TTAA	1 cut(s)	593
MspA1I	CMGCKG	2 cut(s)	218, 257
MspI	CCGG	4 cut(s)	102, 189, 724, 754
MspR9I	CCNGG	2 cut(s)	88, 189
Mva1269I	GAATGC	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	88
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	4 cut(s)	224, 237, 263, 746
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	2 cut(s)	313, 421
NlaIV	GGNNCC	1 cut(s)	270
NsiI	ATGCAT	2 cut(s)	493, 715
NspV	TTCGAA	1 cut(s)	718
PaeR7I	CTCGAG	1 cut(s)	170
PctI	GAATGC	1 cut(s)	300
PfeI	GAWTC	4 cut(s)	175, 581, 601, 658
PflMI	CCANNNNNTGG	2 cut(s)	90, 240
PfoI	TCCNGGA	1 cut(s)	187
PkrI	GCNGC	4 cut(s)	256, 259, 463, 634
PleI	GAGTC	1 cut(s)	632
PpsI	GAGTC	1 cut(s)	632
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	270
SacII	CCGCGG	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	593
SatI	GCNGC	4 cut(s)	255, 258, 462, 633
Sau3AI	GATC	2 cut(s)	313, 421
SchI	GAGTC	1 cut(s)	632
ScrFI	CCNGG	2 cut(s)	88, 189
SexAI	ACCWGGT	1 cut(s)	86
SfaNI	GCATC	2 cut(s)	478, 660
SfcI	CTRYAG	2 cut(s)	247, 803
Sfr274I	CTCGAG	1 cut(s)	170
Sfr303I	CCGCGG	1 cut(s)	258
SfuI	TTCGAA	1 cut(s)	718
SgrBI	CCGCGG	1 cut(s)	258
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	3 cut(s)	79, 183, 410
SsiI	CCGC	6 cut(s)	139, 156, 218, 255, 257, 266
SspMI	CTAG	1 cut(s)	477
StyD4I	CCNGG	2 cut(s)	86, 187
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	3 cut(s)	248, 365, 471
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	3 cut(s)	5, 171, 718
TasI	AATT	3 cut(s)	79, 183, 410
TauI	GCSGC	2 cut(s)	257, 260
TfiI	GAWTC	4 cut(s)	175, 581, 601, 658
Tru1I	TTAA	1 cut(s)	593
Tru9I	TTAA	1 cut(s)	593
TscAI	CASTG	2 cut(s)	370, 695
TseI	GCWGC	2 cut(s)	461, 632
TspDTI	ATGAA	4 cut(s)	276, 419, 576, 750
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	2 cut(s)	370, 695
Van91I	CCANNNNNTGG	2 cut(s)	90, 240
XagI	CCTNNNNNAGG	1 cut(s)	517
XapI	RAATTY	1 cut(s)	183
XhoI	CTCGAG	1 cut(s)	170
XspI	CTAG	1 cut(s)	477
ZraI	GACGTC	1 cut(s)	63
Zsp2I	ATGCAT	2 cut(s)	493, 715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.