Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004741

Physical Location & Seq

Genomic Coordinates Forward (+)

22749761 .. 22753987

Gene Structure 4227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44217

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTCGAAGAAGAAGCTACTGACTCCTCTCTCCTCTCTTCTCCTCCTCCGACGAACCCTAACTTCCACCCCTCATTTCTCAATCCCACACTTCCAATCCCGCACCAATTTCTCCCCCAATATCGAAAAGCTCCGCCCCCTTTTCCCGCTCCCCGGATTTGATTTTCCCGGCAAATCTTTCATCTCCTCCCAATTTGGGAACAAACCCAATTCCCCCCACTGCTGGAACTGCAGCGCTGCCGCTCAAACGACGCCTTTTCTGCTCTGCCCCTCCTGTCGGTGCATCCAACCCGTCGATCACTCCGTCGATTACTTTCAGATATTTGGACTGGAGAGGAAGTATGATAGTGTGGAGGAACATCTGGAGGGAAAATATAAGGATTGGCAGAAAAAGTTGCACCCTGATCTTGTTCATTCAAAATCAGAGAAGGAGAGAGAGTACGCTGCTGAACAGTCTGCTCGGGTGATTGATGCATACCGCACGCTTAGCAAGCCCTTGGCGAGGGCAATATATATTCTGAAGCTTGAAGGTGTAGACATCGATGAAGAAGAGACACTTTCAGACTTAGACTTGTTAAGTGAGATTATGGAAGTAAGGGAAGCTGTTGAAGAGGCTCCCAACTCTCAGGCTTTAAATCTGATTCAGTCTCTGATGCAAGAGAAACTGAAGCAGTGGTCTAATTCTTTTGCCGAGGCATTTGAAAGCCGGAACTTTGAAGAAGCCGTAAAAGCTATCTGGCAAATGACTTACTATGAGAGTGTAAATGAAGAAATTGTAAAGAGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ HSCB_C

Protein Analysis

262

Amino Acids

30.26

Weight (kDa)

5.87

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	103 - 171	7.8e-06	DnaJ domain
HSCB_C	PF07743	188 - 258	3.4e-14	HSCB C-terminal oligomerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06410
fragaria_vesca	FvH4_6g20780 FvH4_6g20780 FvH4_6g20780 FvH4_6g20780 FvH4_6g20780
malus_domestica	MD12G1044000.v1.1 MD14G1043000.v1.1
prunus_persica	Prupe.7G091100_v2.0.a1
pyrus_communis	pycom14g03660
rosa_chinensis	RchiOBHm_Chr3g0476751 RchiOBHm_Chr3g0476781
rosa_laevigata	RLG00000023752 RLG00000023754
rosa_multiflora	Rmu_sc0002399.1_g000008 Rmu_sc0008085.1_g000012 Rmu_sc0042226.1_g000001
rosa_roxburghii	Rroxscaffold_6G00405030
rosa_rugosa	Rorug03G0156700 Rorug03G0156800 Rorug03G0156900
rosa_samantha	Rh3AG206900 Rh3AG207100 Rh3BG239500 Rh3BG239600 Rh3CG233400 Rh3CG233500 Rh3DG233300
rosa_wichuraiana	Rw0G002330 Rw3G018830 Rw3G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	148, 242
AccI	GTMKAC	1 cut(s)	534
AciI	CCGC	5 cut(s)	100, 133, 146, 240, 478
AcuI	CTGAAG	2 cut(s)	539, 686
AcyI	GRCGYC	1 cut(s)	251
AfaI	GTAC	1 cut(s)	440
AfeI	AGCGCT	1 cut(s)	235
AfiI	CCNNNNNNNGG	5 cut(s)	152, 195, 222, 276, 501
AgsI	TTSAA	5 cut(s)	417, 527, 608, 701, 716
AluBI	AGCT	5 cut(s)	16, 130, 523, 602, 731
AluI	AGCT	5 cut(s)	16, 130, 523, 602, 731
Alw26I	GTCTC	2 cut(s)	545, 651
AlwNI	CAGNNNCTG	1 cut(s)	649
Ama87I	CYCGRG	1 cut(s)	459
Aor51HI	AGCGCT	1 cut(s)	235
ApeKI	GCWGC	3 cut(s)	231, 236, 443
AspLEI	GCGC	1 cut(s)	236
AsuC2I	CCSGG	2 cut(s)	153, 168
AsuHPI	GGTGA	1 cut(s)	475
AvaI	CYCGRG	1 cut(s)	459
BbvI	GCAGC	3 cut(s)	223, 243, 430
BceAI	ACGGC	1 cut(s)	707
BcnI	CCSGG	2 cut(s)	153, 168
BcoDI	GTCTC	2 cut(s)	545, 651
BfmI	CTRYAG	1 cut(s)	229
BfoI	RGCGCY	1 cut(s)	237
BisI	GCNGC	4 cut(s)	232, 237, 240, 444
BlpI	GCTNAGC	1 cut(s)	485
BlsI	GCNGC	4 cut(s)	233, 238, 241, 445
Bme1390I	CCNGG	2 cut(s)	153, 168
BmeT110I	CYCGRG	1 cut(s)	459
BmiI	GGNNCC	1 cut(s)	615
BmrFI	CCNGG	2 cut(s)	153, 168
BmsI	GCATC	3 cut(s)	291, 460, 642
BpmI	CTGGAG	2 cut(s)	350, 383
Bpu1102I	GCTNAGC	1 cut(s)	485
BpuMI	CCSGG	2 cut(s)	153, 168
Bsa29I	ATCGAT	1 cut(s)	540
BsaHI	GRCGYC	1 cut(s)	251
BsaJI	CCNNGG	3 cut(s)	151, 495, 690
BsaXI	ACNNNNNCTCC	4 cut(s)	323, 353, 422, 452
Bsc4I	CCNNNNNNNGG	5 cut(s)	152, 195, 222, 276, 501
Bse1I	ACTGG	1 cut(s)	333
BseCI	ATCGAT	1 cut(s)	540
BseDI	CCNNGG	3 cut(s)	151, 495, 690
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	5 cut(s)	152, 195, 222, 276, 501
BseMII	CTCAG	1 cut(s)	638
BseNI	ACTGG	1 cut(s)	333
BseRI	GAGGAG	5 cut(s)	15, 22, 32, 35, 175
BseXI	GCAGC	3 cut(s)	223, 243, 430
BshVI	ATCGAT	1 cut(s)	540
BsiHKCI	CYCGRG	1 cut(s)	459
BsiSI	CCGG	3 cut(s)	153, 168, 706
BslI	CCNNNNNNNGG	5 cut(s)	152, 195, 222, 276, 501
BsmAI	GTCTC	2 cut(s)	545, 651
BsoBI	CYCGRG	1 cut(s)	459
Bsp143I	GATC	2 cut(s)	295, 403
Bsp1720I	GCTNAGC	1 cut(s)	485
BspACI	CCGC	5 cut(s)	100, 133, 146, 240, 478
BspCNI	CTCAG	1 cut(s)	637
BspDI	ATCGAT	1 cut(s)	540
BspLI	GGNNCC	1 cut(s)	615
BspMAI	CTGCAG	1 cut(s)	233
BsrBI	CCGCTC	2 cut(s)	148, 242
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	3 cut(s)	151, 495, 690
BssMI	GATC	2 cut(s)	295, 403
BssNI	GRCGYC	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	495
Bst4CI	ACNGT	1 cut(s)	453
Bst6I	CTCTTC	3 cut(s)	42, 543, 603
BstACI	GRCGYC	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	482, 491
BstDEI	CTNAG	3 cut(s)	485, 565, 624
BstENI	CCTNNNNNAGG	1 cut(s)	499
BstF5I	GGATG	1 cut(s)	282
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	2 cut(s)	298, 406
BstMAI	GTCTC	2 cut(s)	545, 651
BstMBI	GATC	2 cut(s)	295, 403
BstMWI	GCNNNNNNNGC	5 cut(s)	228, 259, 486, 490, 728
BstSCI	CCNGG	2 cut(s)	151, 166
BstSFI	CTRYAG	1 cut(s)	229
BstV1I	GCAGC	3 cut(s)	223, 243, 430
Bsu15I	ATCGAT	1 cut(s)	540
BsuTUI	ATCGAT	1 cut(s)	540
BtsCI	GGATG	1 cut(s)	282
BtsI	GCAGTG	2 cut(s)	217, 677
BtsIMutI	CAGTG	2 cut(s)	217, 677
Cac8I	GCNNGC	2 cut(s)	482, 491
CaiI	CAGNNNCTG	1 cut(s)	649
CfoI	GCGC	1 cut(s)	236
ClaI	ATCGAT	1 cut(s)	540
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	439
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	3 cut(s)	485, 565, 624
DpnI	GATC	2 cut(s)	297, 405
DpnII	GATC	2 cut(s)	295, 403
DraI	TTTAAA	1 cut(s)	633
Eam1104I	CTCTTC	3 cut(s)	42, 543, 603
EarI	CTCTTC	3 cut(s)	42, 543, 603
EciI	GGCGGA	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	495
Eco47III	AGCGCT	1 cut(s)	235
Eco57I	CTGAAG	2 cut(s)	539, 686
Eco88I	CYCGRG	1 cut(s)	459
EcoNI	CCTNNNNNAGG	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	495
EcoT22I	ATGCAT	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	495
FaiI	YATR	7 cut(s)	342, 375, 475, 511, 513, 587, 753
FalI	AAGNNNNNCTT	2 cut(s)	540, 572
FauI	CCCGC	2 cut(s)	107, 153
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	4 cut(s)	232, 237, 240, 444
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	4 cut(s)	232, 237, 240, 444
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	4 cut(s)	232, 237, 240, 444
GsuI	CTGGAG	2 cut(s)	350, 383
HaeII	RGCGCY	1 cut(s)	237
HapII	CCGG	3 cut(s)	153, 168, 706
HgaI	GACGC	1 cut(s)	259
HhaI	GCGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	251
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HindIII	AAGCTT	1 cut(s)	521
HinfI	GANTC	2 cut(s)	22, 640
HpaII	CCGG	3 cut(s)	153, 168, 706
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	7 cut(s)	50, 318, 424, 519, 562, 639, 651
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	1 cut(s)	535
Hpy99I	CGWCG	4 cut(s)	54, 253, 296, 308
HpyAV	CCTTC	2 cut(s)	421, 521
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4V	TGCA	5 cut(s)	231, 282, 397, 473, 655
HpyF10VI	GCNNNNNNNGC	5 cut(s)	228, 259, 486, 490, 728
HpyF3I	CTNAG	3 cut(s)	485, 565, 624
Hsp92I	GRCGYC	1 cut(s)	251
HspAI	GCGC	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	295, 403
LmnI	GCTCC	3 cut(s)	135, 153, 619
Lsp1109I	GCAGC	3 cut(s)	223, 243, 430
LweI	GCATC	3 cut(s)	291, 460, 642
MalI	GATC	2 cut(s)	297, 405
MbiI	CCGCTC	2 cut(s)	148, 242
MboI	GATC	2 cut(s)	295, 403
MboII	GAAGA	8 cut(s)	19, 22, 29, 557, 560, 620, 728, 779
MluCI	AATT	5 cut(s)	106, 191, 208, 679, 771
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	2 cut(s)	73, 310
Mph1103I	ATGCAT	1 cut(s)	475
MseI	TTAA	2 cut(s)	575, 632
MspI	CCGG	3 cut(s)	153, 168, 706
MspR9I	CCNGG	2 cut(s)	153, 168
MwoI	GCNNNNNNNGC	5 cut(s)	228, 259, 486, 490, 728
NciI	CCSGG	2 cut(s)	153, 168
NdeII	GATC	2 cut(s)	295, 403
NlaIV	GGNNCC	1 cut(s)	615
NmeAIII	GCCGAG	1 cut(s)	715
NsiI	ATGCAT	1 cut(s)	475
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	640
PkrI	GCNGC	4 cut(s)	233, 238, 241, 445
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	615
PstI	CTGCAG	1 cut(s)	233
PstNI	CAGNNNCTG	1 cut(s)	649
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
SaqAI	TTAA	2 cut(s)	575, 632
SatI	GCNGC	4 cut(s)	232, 237, 240, 444
Sau3AI	GATC	2 cut(s)	295, 403
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	153, 168
SetI	ASST	6 cut(s)	18, 132, 525, 532, 604, 733
SfaNI	GCATC	3 cut(s)	291, 460, 642
SfcI	CTRYAG	1 cut(s)	229
Sse9I	AATT	5 cut(s)	106, 191, 208, 679, 771
SsiI	CCGC	5 cut(s)	100, 133, 146, 240, 478
StyD4I	CCNGG	2 cut(s)	151, 166
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	453
TaqI	TCGA	5 cut(s)	5, 123, 294, 306, 540
TasI	AATT	5 cut(s)	106, 191, 208, 679, 771
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	640
Tru1I	TTAA	2 cut(s)	575, 632
Tru9I	TTAA	2 cut(s)	575, 632
TscAI	CASTG	2 cut(s)	224, 677
TseI	GCWGC	3 cut(s)	231, 236, 443
TspDTI	ATGAA	4 cut(s)	169, 401, 558, 780
TspGWI	ACGGA	1 cut(s)	292
TspRI	CASTG	2 cut(s)	224, 677
XagI	CCTNNNNNAGG	1 cut(s)	499
XmiI	GTMKAC	1 cut(s)	534
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.