Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042226.1

Orthogroup ID

OG0004741

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1291

Gene Structure 1291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042226.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgtcgaagaagaagctactgactcctctctcctctcttctcctcctccgacgaaccctaacttccacccctcatttctcaatcccacacttgcaatcccgcaccaatttctcccccaatatcgaaaagctccgcccccttttcccgctccccggatttgattttcccggcaaatctttcgtctcctcccaatttggggacaaacccaattcccctcactgctggaactgcagcgctgccgctcgaacgacgccgtttctgctctgctcctcctgtcggtgcatccaacccctcgatcactccgtcgattactttcagatatttggactggagaggaagtatgatagtgtggaggaacatctggagggaaaatataaggattggcagaaaaagttgcaccctgatcttgttcattcaaaatcagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ HSCB_C

Protein Analysis

142

Amino Acids

16.3

Weight (kDa)

9.18

Isoelectric Point (pI)

54.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06410
fragaria_vesca	FvH4_6g20780 FvH4_6g20780 FvH4_6g20780 FvH4_6g20780 FvH4_6g20780
malus_domestica	MD12G1044000.v1.1 MD14G1043000.v1.1
prunus_persica	Prupe.7G091100_v2.0.a1
pyrus_communis	pycom14g03660
rosa_chinensis	RchiOBHm_Chr3g0476751 RchiOBHm_Chr3g0476781
rosa_laevigata	RLG00000023752 RLG00000023754
rosa_multiflora	Rmu_sc0002399.1_g000008 Rmu_sc0008085.1_g000012 Rmu_sc0042226.1_g000001
rosa_roxburghii	Rroxscaffold_6G00405030
rosa_rugosa	Rorug03G0156700 Rorug03G0156800 Rorug03G0156900
rosa_samantha	Rh3AG206900 Rh3AG207100 Rh3BG239500 Rh3BG239600 Rh3CG233400 Rh3CG233500 Rh3DG233300
rosa_wichuraiana	Rw0G002330 Rw3G018830 Rw3G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	148, 242
AciI	CCGC	4 cut(s)	100, 133, 146, 240
AcyI	GRCGYC	1 cut(s)	251
AfeI	AGCGCT	1 cut(s)	235
AfiI	CCNNNNNNNGG	4 cut(s)	152, 195, 196, 276
AgsI	TTSAA	1 cut(s)	417
AluBI	AGCT	2 cut(s)	16, 130
AluI	AGCT	2 cut(s)	16, 130
Alw26I	GTCTC	1 cut(s)	187
Aor51HI	AGCGCT	1 cut(s)	235
ApeKI	GCWGC	2 cut(s)	231, 236
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
AspLEI	GCGC	1 cut(s)	236
AsuC2I	CCSGG	2 cut(s)	153, 168
BbvI	GCAGC	2 cut(s)	223, 243
BceAI	ACGGC	1 cut(s)	238
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BcnI	CCSGG	2 cut(s)	153, 168
BcoDI	GTCTC	1 cut(s)	187
BfmI	CTRYAG	1 cut(s)	229
BfoI	RGCGCY	1 cut(s)	237
BisI	GCNGC	3 cut(s)	232, 237, 240
BlsI	GCNGC	3 cut(s)	233, 238, 241
Bme1390I	CCNGG	2 cut(s)	153, 168
BmrFI	CCNGG	2 cut(s)	153, 168
BmsI	GCATC	1 cut(s)	291
BpmI	CTGGAG	2 cut(s)	350, 383
BpuMI	CCSGG	2 cut(s)	153, 168
BsaHI	GRCGYC	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	4 cut(s)	152, 195, 196, 276
Bse1I	ACTGG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	4 cut(s)	152, 195, 196, 276
BseNI	ACTGG	1 cut(s)	333
BseRI	GAGGAG	6 cut(s)	15, 22, 32, 35, 175, 259
BseXI	GCAGC	2 cut(s)	223, 243
BsiSI	CCGG	2 cut(s)	153, 168
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	4 cut(s)	152, 195, 196, 276
BsmAI	GTCTC	1 cut(s)	187
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	295, 403
BspACI	CCGC	4 cut(s)	100, 133, 146, 240
BspMAI	CTGCAG	1 cut(s)	233
BsrBI	CCGCTC	2 cut(s)	148, 242
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	2 cut(s)	295, 403
BssNI	GRCGYC	1 cut(s)	251
Bst6I	CTCTTC	1 cut(s)	42
BstACI	GRCGYC	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	282
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	2 cut(s)	298, 406
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	2 cut(s)	295, 403
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 259
BstSCI	CCNGG	2 cut(s)	151, 166
BstSFI	CTRYAG	1 cut(s)	229
BstV1I	GCAGC	2 cut(s)	223, 243
BtsCI	GGATG	1 cut(s)	282
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	217
CfoI	GCGC	1 cut(s)	236
CseI	GACGC	1 cut(s)	259
CviJI	RGCY	2 cut(s)	16, 130
CviKI_1	RGCY	2 cut(s)	16, 130
DpnI	GATC	2 cut(s)	297, 405
DpnII	GATC	2 cut(s)	295, 403
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
EciI	GGCGGA	1 cut(s)	122
Eco47III	AGCGCT	1 cut(s)	235
Esp3I	CGTCTC	1 cut(s)	187
FaiI	YATR	2 cut(s)	342, 375
FaqI	GGGAC	1 cut(s)	212
FauI	CCCGC	2 cut(s)	107, 153
Fnu4HI	GCNGC	3 cut(s)	232, 237, 240
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	3 cut(s)	232, 237, 240
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	3 cut(s)	232, 237, 240
GsuI	CTGGAG	2 cut(s)	350, 383
HaeII	RGCGCY	1 cut(s)	237
HapII	CCGG	2 cut(s)	153, 168
HgaI	GACGC	1 cut(s)	259
HhaI	GCGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	251
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HinfI	GANTC	1 cut(s)	22
HpaII	CCGG	2 cut(s)	153, 168
Hpy188I	TCNGA	3 cut(s)	50, 318, 424
Hpy188III	TCNNGA	1 cut(s)	362
Hpy99I	CGWCG	3 cut(s)	54, 253, 308
HpyCH4V	TGCA	4 cut(s)	94, 231, 282, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 259
Hsp92I	GRCGYC	1 cut(s)	251
HspAI	GCGC	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	295, 403
LmnI	GCTCC	3 cut(s)	135, 153, 272
LpnPI	CCDG	7 cut(s)	166, 181, 208, 286, 314, 347, 414
Lsp1109I	GCAGC	2 cut(s)	223, 243
LweI	GCATC	1 cut(s)	291
MalI	GATC	2 cut(s)	297, 405
MbiI	CCGCTC	2 cut(s)	148, 242
MboI	GATC	2 cut(s)	295, 403
MboII	GAAGA	3 cut(s)	19, 22, 29
MluCI	AATT	3 cut(s)	106, 191, 208
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	2 cut(s)	73, 310
MspI	CCGG	2 cut(s)	153, 168
MspR9I	CCNGG	2 cut(s)	153, 168
MwoI	GCNNNNNNNGC	2 cut(s)	228, 259
NciI	CCSGG	2 cut(s)	153, 168
NdeII	GATC	2 cut(s)	295, 403
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PkrI	GCNGC	3 cut(s)	233, 238, 241
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PstI	CTGCAG	1 cut(s)	233
SatI	GCNGC	3 cut(s)	232, 237, 240
Sau3AI	GATC	2 cut(s)	295, 403
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	153, 168
SetI	ASST	2 cut(s)	18, 132
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	229
Sse9I	AATT	3 cut(s)	106, 191, 208
SsiI	CCGC	4 cut(s)	100, 133, 146, 240
StyD4I	CCNGG	2 cut(s)	151, 166
TaqI	TCGA	5 cut(s)	5, 123, 244, 294, 306
TasI	AATT	3 cut(s)	106, 191, 208
TauI	GCSGC	1 cut(s)	242
TscAI	CASTG	1 cut(s)	224
TseI	GCWGC	2 cut(s)	231, 236
TspDTI	ATGAA	1 cut(s)	401
TspGWI	ACGGA	1 cut(s)	292
TspRI	CASTG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.