FvH4_6g26830

Mitochondrial ribosomal subunit protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006027
Physical Location & Seq
Reverse (-)
20516968 .. 20524540
7573 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26830.t3

Sequence Viewer

Length: 1251 bp
ATGAGGCGGACTCTGCTGAGAAATCTCTCTCTATACGCTCGCAACCGCCTCGCCACATCTAATCCTAGCCCTTCACTGGCCACCTCTACTACTAGACTCTTCTCCTCCGATGAGAACGAATCATCGTCCCCCAATGACTCCTCCCCAGAAAAACCTAATCCCTCTCCTGAGTCGACCCTCAGCCAAATCTTGAAGAAGGATTCCTCCGTGCAACTCCAGGACATCAATAACAAAGAAATGAAAACAAGGATGGAGGAGTACTTGAAGGATGGTAAGGAGGAGGCGCTCCCATCGATCCTCGAAGCAATTCTGCAAAGGAAATTGGCTGGGAAGCATGACGACACTGATGATGAATTGGTGGATGATCTGCAAATGCAGCCACTGGACAATGTTAAGGACCAAGAGTTTGAATCCGATTTTGAAGAATTCCATGACACTGATGAGGAGATTGATGACTTGTATGATGCCAAGGATGTAGTGGTGAATAAGATGGTGAAAGATGAGTTCTTCAATATGGATGACAAAAAGTGGGATGGCATGGTTCAGGAGGCAATTAAACATGGTTTAATGAAGGATATGAAAGAGTGTGAGGACATTCTTGAGGATATGCTTAGCTGGGACAAGCTCTTGCCAGATGACATTAAGAAGAAGGTAGAAGAGAAGTTCAATGACCTAGGGGATAGGTGTGAAAGAGGTGAGCTTGAACCTGAAGATGCATACAAATTGTTTAAGGAGTTTGAGGACGAGATTGTCTTGGAATATACGAAGAAGGTGGAAGCTCAGGACCCCTCACAATTTGATGAGATAGCTGTACCAAACATGAAAAGAGACATAGATGACCCACCAGGTGAAGGGCCTATCCTTAGGTGGCAGACACGAGTGGTCTTTGCTCCTGGTGGTGATGCTTGGCACCCGAAGAATAGAAAAGTGAAGCTGTCTGTTACGGTGAAAGAACTTGGGCTTTCAAAGCATCAATTCCATCGGCTCAGAGAATTGGTTGGAAAGCGATATAATCCGGGGAAAGATGAGCTCACTATTACTAGTGAGAGGTTCGAACACCGAGAGGAAAACAGAAAAGATTGCCTTAGGACTCTTCTTTCCCTCATTGAGGAAGCTGAGAAAGCTAACAAGCTGGCCGAAGATGCTCGAATTTCGTATGTCAAGGAAAGATTAAGAGCGAATCCTGCATTCATGGAGAGACTGCGTAACAAGACAATGAGGTTGCAAGGACATACCACAGTGACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRP-S28

Protein Analysis

417

Amino Acids

48.29

Weight (kDa)

4.94

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRP-S28 PF10213 302 - 382 1.6e-18 Mitochondrial ribosomal subunit protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 749
AccB1I GGYRCC 1 cut(s) 909
AccI GTMKAC 1 cut(s) 173
AciI CCGC 2 cut(s) 7, 46
AclWI GGATC 1 cut(s) 289
AcoI YGGCCR 2 cut(s) 78, 1134
AcsI RAATTY 2 cut(s) 425, 1149
AcuI CTGAAG 1 cut(s) 729
AdeI CACNNNGTG 1 cut(s) 848
AfaI GTAC 2 cut(s) 260, 813
AfiI CCNNNNNNNGG 3 cut(s) 76, 851, 1108
AgsI TTSAA 8 cut(s) 193, 265, 410, 422, 511, 667, 704, 966
AhlI ACTAGT 1 cut(s) 1040
AjnI CCWGG 3 cut(s) 216, 844, 892
Alw21I GWGCWC 1 cut(s) 1032
Alw26I GTCTC 2 cut(s) 822, 1192
AlwI GGATC 1 cut(s) 289
AlwNI CAGNNNCTG 2 cut(s) 382, 1244
AoxI GGCC 3 cut(s) 78, 854, 1134
ApeKI GCWGC 1 cut(s) 376
ApoI RAATTY 2 cut(s) 425, 1149
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
Asp700I GAANNNNTTC 1 cut(s) 306
AspA2I CCTAGG 1 cut(s) 673
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 3 cut(s) 397, 784, 854
AsuC2I CCSGG 1 cut(s) 1017
AsuHPI GGTGA 6 cut(s) 493, 505, 707, 860, 911, 958
AsuII TTCGAA 1 cut(s) 1053
AvaII GGWCC 2 cut(s) 397, 784
AvrII CCTAGG 1 cut(s) 673
AxyI CCTNAGG 2 cut(s) 863, 1085
BalI TGGCCA 1 cut(s) 80
BanI GGYRCC 1 cut(s) 909
BanII GRGCYC 1 cut(s) 1032
BauI CACGAG 1 cut(s) 876
Bbv12I GWGCWC 1 cut(s) 1032
BbvCI CCTCAGC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 388
BccI CCATC 6 cut(s) 244, 263, 298, 484, 527, 987
BcgI CGANNNNNNTGC 2 cut(s) 31, 65
BciT130I CCWGG 3 cut(s) 218, 846, 894
BcnI CCSGG 1 cut(s) 1017
BcoDI GTCTC 2 cut(s) 822, 1192
BcuI ACTAGT 1 cut(s) 1040
BfaI CTAG 4 cut(s) 66, 93, 674, 1041
BfoI RGCGCY 1 cut(s) 287
BisI GCNGC 1 cut(s) 377
BlnI CCTAGG 1 cut(s) 673
BlpI GCTNAGC 1 cut(s) 611
BlsI GCNGC 1 cut(s) 378
BmcAI AGTACT 1 cut(s) 260
Bme1390I CCNGG 4 cut(s) 218, 846, 894, 1017
Bme18I GGWCC 2 cut(s) 397, 784
BmgT120I GGNCC 3 cut(s) 397, 784, 854
BmiI GGNNCC 2 cut(s) 786, 911
BmrFI CCNGG 4 cut(s) 218, 846, 894, 1017
BmsI GCATC 5 cut(s) 454, 703, 892, 979, 1132
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 200
Bpu10I CCTNAGC 2 cut(s) 179, 780
Bpu1102I GCTNAGC 1 cut(s) 611
Bpu14I TTCGAA 1 cut(s) 1053
BpuEI CTTGAG 1 cut(s) 620
BpuMI CCSGG 1 cut(s) 1017
Bsa29I ATCGAT 1 cut(s) 293
BsaJI CCNNGG 3 cut(s) 468, 673, 1016
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 851, 1108
Bse1I ACTGG 2 cut(s) 81, 387
Bse21I CCTNAGG 2 cut(s) 863, 1085
BseBI CCWGG 3 cut(s) 218, 846, 894
BseCI ATCGAT 1 cut(s) 293
BseDI CCNNGG 3 cut(s) 468, 673, 1016
BseGI GGATG 6 cut(s) 255, 274, 367, 478, 523, 538
BseLI CCNNNNNNNGG 3 cut(s) 76, 851, 1108
BseMII CTCAG 6 cut(s) 8, 159, 193, 794, 1000, 1107
BseNI ACTGG 2 cut(s) 81, 387
BseRI GAGGAG 5 cut(s) 94, 130, 269, 293, 458
BseXI GCAGC 1 cut(s) 388
BseYI CCCAGC 2 cut(s) 326, 615
BshFI GGCC 3 cut(s) 80, 856, 1136
BshNI GGYRCC 1 cut(s) 909
BshVI ATCGAT 1 cut(s) 293
BsiHKAI GWGCWC 1 cut(s) 1032
BsiSI CCGG 1 cut(s) 1016
BslFI GGGAC 2 cut(s) 112, 632
BslI CCNNNNNNNGG 3 cut(s) 76, 851, 1108
BsmAI GTCTC 2 cut(s) 822, 1192
BsmFI GGGAC 2 cut(s) 112, 632
BsmI GAATGC 1 cut(s) 1187
BsnI GGCC 3 cut(s) 80, 856, 1136
Bsp119I TTCGAA 1 cut(s) 1053
Bsp1286I GDGCHC 1 cut(s) 1032
Bsp143I GATC 2 cut(s) 294, 364
Bsp1720I GCTNAGC 1 cut(s) 611
BspACI CCGC 2 cut(s) 7, 46
BspANI GGCC 3 cut(s) 80, 856, 1136
BspCNI CTCAG 6 cut(s) 9, 160, 192, 793, 999, 1108
BspDI ATCGAT 1 cut(s) 293
BspLI GGNNCC 2 cut(s) 786, 911
BspPI GGATC 1 cut(s) 289
BspT104I TTCGAA 1 cut(s) 1053
BspT107I GGYRCC 1 cut(s) 909
BsrI ACTGG 2 cut(s) 81, 387
BssECI CCNNGG 3 cut(s) 468, 673, 1016
BssMI GATC 2 cut(s) 294, 364
BssSI CACGAG 1 cut(s) 876
BssT1I CCWWGG 2 cut(s) 468, 673
Bst2BI CACGAG 1 cut(s) 876
Bst2UI CCWGG 3 cut(s) 218, 846, 894
Bst4CI ACNGT 2 cut(s) 946, 1240
Bst6I CTCTTC 3 cut(s) 104, 651, 1098
BstBI TTCGAA 1 cut(s) 1053
BstC8I GCNNGC 2 cut(s) 40, 1134
BstDEI CTNAG 9 cut(s) 17, 168, 179, 611, 780, 863, 986, 1085, 1116
BstENI CCTNNNNNAGG 1 cut(s) 1106
BstF5I GGATG 6 cut(s) 255, 274, 367, 478, 523, 538
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 2 cut(s) 297, 367
BstMAI GTCTC 2 cut(s) 822, 1192
BstMBI GATC 2 cut(s) 294, 364
BstMWI GCNNNNNNNGC 6 cut(s) 13, 376, 967, 1121, 1142, 1184
BstNI CCWGG 3 cut(s) 218, 846, 894
BstSCI CCNGG 4 cut(s) 216, 844, 892, 1015
BstV1I GCAGC 1 cut(s) 388
Bsu15I ATCGAT 1 cut(s) 293
Bsu36I CCTNAGG 2 cut(s) 863, 1085
BsuRI GGCC 3 cut(s) 80, 856, 1136
BsuTUI ATCGAT 1 cut(s) 293
BtsCI GGATG 6 cut(s) 255, 274, 367, 478, 523, 538
BtsIMutI CAGTG 5 cut(s) 74, 342, 380, 435, 1245
Cac8I GCNNGC 2 cut(s) 40, 1134
CaiI CAGNNNCTG 2 cut(s) 382, 1244
CfoI GCGC 1 cut(s) 286
Cfr13I GGNCC 3 cut(s) 397, 784, 854
ClaI ATCGAT 1 cut(s) 293
CsiI ACCWGGT 1 cut(s) 844
Csp6I GTAC 2 cut(s) 259, 812
CviAII CATG 6 cut(s) 335, 431, 538, 560, 820, 1192
CviQI GTAC 2 cut(s) 259, 812
DdeI CTNAG 9 cut(s) 17, 168, 179, 611, 780, 863, 986, 1085, 1116
DpnI GATC 2 cut(s) 296, 366
DpnII GATC 2 cut(s) 294, 364
DraIII CACNNNGTG 1 cut(s) 848
DrdI GACNNNNNNGTC 1 cut(s) 749
DseDI GACNNNNNNGTC 1 cut(s) 749
EaeI YGGCCR 2 cut(s) 78, 1134
Eam1104I CTCTTC 3 cut(s) 104, 651, 1098
EarI CTCTTC 3 cut(s) 104, 651, 1098
EciI GGCGGA 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 1030
Eco130I CCWWGG 2 cut(s) 468, 673
Eco24I GRGCYC 1 cut(s) 1032
Eco47I GGWCC 2 cut(s) 397, 784
Eco53kI GAGCTC 1 cut(s) 1030
Eco57I CTGAAG 1 cut(s) 729
Eco81I CCTNAGG 2 cut(s) 863, 1085
EcoICRI GAGCTC 1 cut(s) 1030
EcoNI CCTNNNNNAGG 1 cut(s) 1106
EcoO109I RGGNCCY 2 cut(s) 784, 854
EcoRI GAATTC 1 cut(s) 425
EcoRII CCWGG 3 cut(s) 216, 844, 892
EcoT14I CCWWGG 2 cut(s) 468, 673
EcoT22I ATGCAT 1 cut(s) 718
EcoT38I GRGCYC 1 cut(s) 1032
ErhI CCWWGG 2 cut(s) 468, 673
FaeI CATG 6 cut(s) 338, 434, 541, 563, 823, 1195
FalI AAGNNNNNCTT 2 cut(s) 1068, 1100
FaqI GGGAC 2 cut(s) 112, 632
FatI CATG 6 cut(s) 334, 430, 537, 559, 819, 1191
FblI GTMKAC 1 cut(s) 173
Fnu4HI GCNGC 1 cut(s) 377
FokI GGATG 6 cut(s) 262, 281, 374, 485, 530, 545
FriOI GRGCYC 1 cut(s) 1032
Fsp4HI GCNGC 1 cut(s) 377
FspBI CTAG 4 cut(s) 66, 93, 674, 1041
GlaI GCGC 1 cut(s) 285
GluI GCNGC 1 cut(s) 377
GsaI CCCAGC 2 cut(s) 330, 619
GsuI CTGGAG 1 cut(s) 200
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 3 cut(s) 80, 856, 1136
HapII CCGG 1 cut(s) 1016
HhaI GCGC 1 cut(s) 286
Hin1II CATG 6 cut(s) 338, 434, 541, 563, 823, 1195
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HinfI GANTC 9 cut(s) 10, 96, 119, 137, 170, 200, 410, 1090, 1180
HpaII CCGG 1 cut(s) 1016
HphI GGTGA 6 cut(s) 493, 505, 707, 860, 911, 958
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 3 cut(s) 109, 415, 989
Hpy188III TCNNGA 5 cut(s) 167, 190, 545, 599, 782
Hpy8I GTNNAC 1 cut(s) 174
HpyAV CCTTC 7 cut(s) 81, 190, 259, 565, 643, 763, 845
HpyCH4III ACNGT 2 cut(s) 946, 1240
HpyCH4V TGCA 7 cut(s) 211, 313, 370, 376, 716, 1187, 1225
HpyF10VI GCNNNNNNNGC 6 cut(s) 13, 376, 967, 1121, 1142, 1184
HpyF3I CTNAG 9 cut(s) 17, 168, 179, 611, 780, 863, 986, 1085, 1116
Hsp92II CATG 6 cut(s) 338, 434, 541, 563, 823, 1195
HspAI GCGC 1 cut(s) 284
Kzo9I GATC 2 cut(s) 294, 364
LmnI GCTCC 2 cut(s) 291, 895
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 5 cut(s) 454, 703, 892, 979, 1132
MabI ACCWGGT 1 cut(s) 844
MaeI CTAG 4 cut(s) 66, 93, 674, 1041
MaeIII GTNAC 3 cut(s) 940, 1205, 1240
MalI GATC 2 cut(s) 296, 366
MboI GATC 2 cut(s) 294, 364
MhlI GDGCHC 1 cut(s) 1032
MlsI TGGCCA 1 cut(s) 80
MluNI TGGCCA 1 cut(s) 80
MlyI GAGTC 5 cut(s) 4, 90, 131, 179, 1084
MmeI TCCRAC 1 cut(s) 979
Mox20I TGGCCA 1 cut(s) 80
Mph1103I ATGCAT 1 cut(s) 718
MroXI GAANNNNTTC 1 cut(s) 306
MscI TGGCCA 1 cut(s) 80
MseI TTAA 6 cut(s) 393, 555, 566, 642, 729, 1172
Msp20I TGGCCA 1 cut(s) 80
MspI CCGG 1 cut(s) 1016
MspR9I CCNGG 4 cut(s) 218, 846, 894, 1017
Mva1269I GAATGC 1 cut(s) 1187
MvaI CCWGG 3 cut(s) 218, 846, 894
MwoI GCNNNNNNNGC 6 cut(s) 13, 376, 967, 1121, 1142, 1184
NciI CCSGG 1 cut(s) 1017
NdeII GATC 2 cut(s) 294, 364
NlaIII CATG 6 cut(s) 338, 434, 541, 563, 823, 1195
NlaIV GGNNCC 2 cut(s) 786, 911
NmuCI GTSAC 1 cut(s) 1240
NsiI ATGCAT 1 cut(s) 718
NspV TTCGAA 1 cut(s) 1053
PctI GAATGC 1 cut(s) 1187
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 4 cut(s) 119, 200, 410, 1180
PfoI TCCNGGA 1 cut(s) 216
PkrI GCNGC 1 cut(s) 378
PleI GAGTC 5 cut(s) 4, 90, 131, 178, 1084
PpsI GAGTC 5 cut(s) 4, 90, 131, 178, 1084
PpuMI RGGWCCY 1 cut(s) 784
Psp124BI GAGCTC 1 cut(s) 1032
Psp5II RGGWCCY 1 cut(s) 784
Psp6I CCWGG 3 cut(s) 216, 844, 892
PspFI CCCAGC 2 cut(s) 326, 615
PspGI CCWGG 3 cut(s) 216, 844, 892
PspN4I GGNNCC 2 cut(s) 786, 911
PspPI GGNCC 3 cut(s) 397, 784, 854
PspPPI RGGWCCY 1 cut(s) 784
PstNI CAGNNNCTG 2 cut(s) 382, 1244
RsaI GTAC 2 cut(s) 260, 813
RsaNI GTAC 2 cut(s) 259, 812
SacI GAGCTC 1 cut(s) 1032
SalI GTCGAC 1 cut(s) 172
SaqAI TTAA 6 cut(s) 393, 555, 566, 642, 729, 1172
SatI GCNGC 1 cut(s) 377
Sau3AI GATC 2 cut(s) 294, 364
Sau96I GGNCC 3 cut(s) 397, 784, 854
ScaI AGTACT 1 cut(s) 260
SchI GAGTC 5 cut(s) 4, 90, 131, 179, 1084
ScrFI CCNGG 4 cut(s) 218, 846, 894, 1017
SduI GDGCHC 1 cut(s) 1032
SexAI ACCWGGT 1 cut(s) 844
SfaNI GCATC 5 cut(s) 454, 703, 892, 979, 1132
SfuI TTCGAA 1 cut(s) 1053
SinI GGWCC 2 cut(s) 397, 784
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
SpeI ACTAGT 1 cut(s) 1040
SsiI CCGC 2 cut(s) 7, 46
SspMI CTAG 4 cut(s) 66, 93, 674, 1041
SstI GAGCTC 1 cut(s) 1032
StyD4I CCNGG 4 cut(s) 216, 844, 892, 1015
StyI CCWWGG 2 cut(s) 468, 673
TaaI ACNGT 2 cut(s) 946, 1240
TaqI TCGA 5 cut(s) 173, 293, 300, 1053, 1147
TatI WGTACW 1 cut(s) 258
TfiI GAWTC 4 cut(s) 119, 200, 410, 1180
Tru1I TTAA 6 cut(s) 393, 555, 566, 642, 729, 1172
Tru9I TTAA 6 cut(s) 393, 555, 566, 642, 729, 1172
TscAI CASTG 5 cut(s) 81, 349, 387, 442, 1245
TseFI GTSAC 1 cut(s) 1240
TseI GCWGC 1 cut(s) 376
Tsp45I GTSAC 1 cut(s) 1240
TspDTI ATGAA 6 cut(s) 254, 366, 584, 593, 836, 1180
TspGWI ACGGA 1 cut(s) 196
TspRI CASTG 5 cut(s) 81, 349, 387, 442, 1245
VpaK11BI GGWCC 2 cut(s) 397, 784
XagI CCTNNNNNAGG 1 cut(s) 1106
XapI RAATTY 2 cut(s) 425, 1149
XcmI CCANNNNNNNNNTGG 1 cut(s) 475
XmaJI CCTAGG 1 cut(s) 673
XmiI GTMKAC 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 4 cut(s) 66, 93, 674, 1041
ZrmI AGTACT 1 cut(s) 260
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.