Rh2CG316900

Mitochondrial ribosomal subunit protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006027
Physical Location & Seq
Reverse (-)
40411617 .. 40415877
4261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG316900.1

Sequence Viewer

Length: 1056 bp
ATGAGGCGGACTCTGCTGAGAAATGTCTCTCTCTACGCTCGCAACCGCCTCGTCTCCCCAAAACCTTGCCCTACTTCTTCACTCGCCGCTTCTGCCAGGCGCTTCTCCTCCGACAAAAACGACTCGTCGTCTCCCAATGACTCGCCCCCAGAAAGCTCCAATCCCTCTCCTGAGTCGCGCCTCACCCAAGTCTTGAAGAAGGACTCCTCCATTCAACTCGAGGACATCAGTAACAAAGAACTGAAAACAAGAATGGAGGAATACTTGAAGGAAGGTAAGGAGGAGGCGCTGCCATCGATCCTCGAAGCGATTCTGCAGAGGAAATTGGCTGGGAAGCATGAGGACACGGATGATGAATTGGTGGATGATCTGCAAATGCAGCCATTGGAGAATGTTAAGGACCAAGAGTTTGAATCTGATTTCGAAGAAATCCACCACACCGATGAAGAGATTGATGATTTGTATGATGCCAAGGATGTAGTGGTGAAGAAGATGGTGAAGGATGAGTTCTTCAATATGGATGACAAAAAATGGGATGGTATTGTTCAGGATGCGATCAAGCACGGGATTATGAAGGATATGAGAGAGTGTGAGGAAATTCTTGAGGATATGCTTAGCTGGGACAAGCTCTTGCCAGATGACATTAAGAAGAAGGTAGAAGAGAAGTTCAATGACCTAGGGGATAGGTGTGAAAGAGGGGAGCTTGAACCTGAAGATGCTTACAAGTTGTTTAAGGAGTTTGAGGACGAGATTGTCATGGAATATACGAAAAAGGTGGAAGCTCAGGATCCCTCACAATTTGACGAGATAGCTGTACCGGACATGAAAAGAGACATAGATGACCCACCGGGTGAAGGGCCAATCCTTAGGTGGCAAACACGAGTGGTCTTTGCTCCTGGTGGTGATGCTTGGCATCCAAAGAATAGAAAAGTGAAGCTGTCTGTTACGGTGAAAGAACTCGGGCTTTCAAAGCATCAATTCCGTCGGCTCAGAGAATTGGTTGGAAAGCGATACAATCCAGGGAAAGATGAGCTCACTATTACTAGTGAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRP-S28

Protein Analysis

351

Amino Acids

40.68

Weight (kDa)

4.87

Isoelectric Point (pI)

52.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRP-S28 PF10213 303 - 351 9.4e-09 Mitochondrial ribosomal subunit protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 752
AccII CGCG 1 cut(s) 178
AciI CCGC 3 cut(s) 7, 46, 87
AclWI GGATC 3 cut(s) 292, 782, 795
AcsI RAATTY 1 cut(s) 597
AcuI CTGAAG 1 cut(s) 732
AdeI CACNNNGTG 1 cut(s) 851
AfaI GTAC 1 cut(s) 816
AfiI CCNNNNNNNGG 1 cut(s) 854
AgsI TTSAA 8 cut(s) 196, 215, 268, 413, 514, 670, 707, 969
AhdI GACNNNNNGTC 1 cut(s) 127
AhlI ACTAGT 1 cut(s) 1043
AjnI CCWGG 3 cut(s) 95, 895, 1018
AluBI AGCT 8 cut(s) 156, 618, 628, 703, 782, 812, 937, 1033
AluI AGCT 8 cut(s) 156, 618, 628, 703, 782, 812, 937, 1033
Alw21I GWGCWC 1 cut(s) 1035
Alw26I GTCTC 4 cut(s) 31, 58, 135, 825
AlwI GGATC 3 cut(s) 292, 782, 795
Ama87I CYCGRG 2 cut(s) 218, 959
AoxI GGCC 1 cut(s) 857
ApeKI GCWGC 2 cut(s) 289, 379
ApoI RAATTY 1 cut(s) 597
ArsI GACNNNNNNTTYG 2 cut(s) 392, 424
Asp700I GAANNNNTTC 1 cut(s) 309
AspA2I CCTAGG 1 cut(s) 676
AspLEI GCGC 3 cut(s) 102, 180, 289
AspS9I GGNCC 2 cut(s) 400, 857
AsuC2I CCSGG 1 cut(s) 849
AsuHPI GGTGA 6 cut(s) 175, 496, 508, 863, 914, 961
AsuII TTCGAA 1 cut(s) 423
AvaI CYCGRG 2 cut(s) 218, 959
AvaII GGWCC 1 cut(s) 400
AvrII CCTAGG 1 cut(s) 676
AxyI CCTNAGG 1 cut(s) 866
BamHI GGATCC 1 cut(s) 787
BanII GRGCYC 1 cut(s) 1035
BauI CACGAG 1 cut(s) 879
Bbv12I GWGCWC 1 cut(s) 1035
BbvI GCAGC 2 cut(s) 276, 391
BccI CCATC 3 cut(s) 301, 487, 530
BcgI CGANNNNNNTGC 2 cut(s) 31, 65
BciT130I CCWGG 3 cut(s) 97, 897, 1020
BcnI CCSGG 1 cut(s) 849
BcoDI GTCTC 4 cut(s) 31, 58, 135, 825
BcuI ACTAGT 1 cut(s) 1043
BfaI CTAG 2 cut(s) 677, 1044
BfmI CTRYAG 1 cut(s) 314
BfoI RGCGCY 2 cut(s) 103, 290
BisI GCNGC 3 cut(s) 87, 290, 380
BlnI CCTAGG 1 cut(s) 676
BlpI GCTNAGC 1 cut(s) 614
BlsI GCNGC 3 cut(s) 88, 291, 381
Bme1390I CCNGG 4 cut(s) 97, 849, 897, 1020
Bme18I GGWCC 1 cut(s) 400
BmeRI GACNNNNNGTC 1 cut(s) 127
BmeT110I CYCGRG 2 cut(s) 218, 959
BmgT120I GGNCC 2 cut(s) 400, 857
BmiI GGNNCC 1 cut(s) 789
BmrFI CCNGG 4 cut(s) 97, 849, 897, 1020
BmsI GCATC 6 cut(s) 457, 541, 706, 895, 922, 982
BplI GAGNNNNNCTC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 783
Bpu1102I GCTNAGC 1 cut(s) 614
Bpu14I TTCGAA 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 623
BpuMI CCSGG 1 cut(s) 849
Bsa29I ATCGAT 1 cut(s) 296
BsaJI CCNNGG 3 cut(s) 471, 676, 1019
BsaWI WCCGGW 1 cut(s) 817
Bsc4I CCNNNNNNNGG 1 cut(s) 854
Bse21I CCTNAGG 1 cut(s) 866
BseBI CCWGG 3 cut(s) 97, 897, 1020
BseCI ATCGAT 1 cut(s) 296
BseDI CCNNGG 3 cut(s) 471, 676, 1019
BseGI GGATG 8 cut(s) 355, 370, 481, 508, 526, 541, 556, 913
BseLI CCNNNNNNNGG 1 cut(s) 854
BseMII CTCAG 4 cut(s) 8, 162, 797, 1003
BseRI GAGGAG 3 cut(s) 97, 196, 296
BseXI GCAGC 2 cut(s) 276, 391
BseYI CCCAGC 2 cut(s) 329, 618
Bsh1236I CGCG 1 cut(s) 178
BshFI GGCC 1 cut(s) 859
BshVI ATCGAT 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 1035
BsiHKCI CYCGRG 2 cut(s) 218, 959
BsiSI CCGG 2 cut(s) 818, 848
BslFI GGGAC 1 cut(s) 635
BslI CCNNNNNNNGG 1 cut(s) 854
BsmAI GTCTC 4 cut(s) 31, 58, 135, 825
BsmBI CGTCTC 2 cut(s) 58, 135
BsmFI GGGAC 1 cut(s) 635
BsnI GGCC 1 cut(s) 859
BsoBI CYCGRG 2 cut(s) 218, 959
Bsp119I TTCGAA 1 cut(s) 423
Bsp1286I GDGCHC 1 cut(s) 1035
Bsp143I GATC 4 cut(s) 297, 367, 555, 787
Bsp1720I GCTNAGC 1 cut(s) 614
BspACI CCGC 3 cut(s) 7, 46, 87
BspANI GGCC 1 cut(s) 859
BspCNI CTCAG 4 cut(s) 9, 163, 796, 1002
BspDI ATCGAT 1 cut(s) 296
BspFNI CGCG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 789
BspMAI CTGCAG 1 cut(s) 318
BspPI GGATC 3 cut(s) 292, 782, 795
BspT104I TTCGAA 1 cut(s) 423
BssECI CCNNGG 3 cut(s) 471, 676, 1019
BssMI GATC 4 cut(s) 297, 367, 555, 787
BssSI CACGAG 1 cut(s) 879
BssT1I CCWWGG 2 cut(s) 471, 676
Bst2BI CACGAG 1 cut(s) 879
Bst2UI CCWGG 3 cut(s) 97, 897, 1020
Bst4CI ACNGT 1 cut(s) 949
Bst6I CTCTTC 2 cut(s) 441, 654
BstBI TTCGAA 1 cut(s) 423
BstC8I GCNNGC 1 cut(s) 40
BstDEI CTNAG 6 cut(s) 17, 171, 614, 783, 866, 989
BstF5I GGATG 8 cut(s) 355, 370, 481, 508, 526, 541, 556, 913
BstFNI CGCG 1 cut(s) 178
BstH2I RGCGCY 2 cut(s) 103, 290
BstHHI GCGC 3 cut(s) 102, 180, 289
BstKTI GATC 4 cut(s) 300, 370, 558, 790
BstMAI GTCTC 4 cut(s) 31, 58, 135, 825
BstMBI GATC 4 cut(s) 297, 367, 555, 787
BstMWI GCNNNNNNNGC 4 cut(s) 13, 92, 379, 970
BstNI CCWGG 3 cut(s) 97, 897, 1020
BstSCI CCNGG 4 cut(s) 95, 847, 895, 1018
BstSFI CTRYAG 1 cut(s) 314
BstUI CGCG 1 cut(s) 178
BstV1I GCAGC 2 cut(s) 276, 391
BstX2I RGATCY 1 cut(s) 787
BstYI RGATCY 1 cut(s) 787
Bsu15I ATCGAT 1 cut(s) 296
Bsu36I CCTNAGG 1 cut(s) 866
BsuRI GGCC 1 cut(s) 859
BsuTUI ATCGAT 1 cut(s) 296
BtsCI GGATG 8 cut(s) 355, 370, 481, 508, 526, 541, 556, 913
Cac8I GCNNGC 1 cut(s) 40
CfoI GCGC 3 cut(s) 102, 180, 289
Cfr13I GGNCC 2 cut(s) 400, 857
ClaI ATCGAT 1 cut(s) 296
Csp6I GTAC 1 cut(s) 815
CviAII CATG 3 cut(s) 338, 757, 823
CviQI GTAC 1 cut(s) 815
DdeI CTNAG 6 cut(s) 17, 171, 614, 783, 866, 989
DpnI GATC 4 cut(s) 299, 369, 557, 789
DpnII GATC 4 cut(s) 297, 367, 555, 787
DraIII CACNNNGTG 1 cut(s) 851
DrdI GACNNNNNNGTC 1 cut(s) 752
DriI GACNNNNNGTC 1 cut(s) 127
DseDI GACNNNNNNGTC 1 cut(s) 752
Eam1104I CTCTTC 2 cut(s) 441, 654
Eam1105I GACNNNNNGTC 1 cut(s) 127
EarI CTCTTC 2 cut(s) 441, 654
EciI GGCGGA 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 1033
Eco130I CCWWGG 2 cut(s) 471, 676
Eco24I GRGCYC 1 cut(s) 1035
Eco47I GGWCC 1 cut(s) 400
Eco53kI GAGCTC 1 cut(s) 1033
Eco57I CTGAAG 1 cut(s) 732
Eco81I CCTNAGG 1 cut(s) 866
Eco88I CYCGRG 2 cut(s) 218, 959
EcoICRI GAGCTC 1 cut(s) 1033
EcoRII CCWGG 3 cut(s) 95, 895, 1018
EcoT14I CCWWGG 2 cut(s) 471, 676
EcoT38I GRGCYC 1 cut(s) 1035
ErhI CCWWGG 2 cut(s) 471, 676
Esp3I CGTCTC 2 cut(s) 58, 135
FaeI CATG 3 cut(s) 341, 760, 826
FaqI GGGAC 1 cut(s) 635
FatI CATG 3 cut(s) 337, 756, 822
Fnu4HI GCNGC 3 cut(s) 87, 290, 380
FokI GGATG 8 cut(s) 362, 377, 488, 515, 533, 548, 563, 900
FriOI GRGCYC 1 cut(s) 1035
Fsp4HI GCNGC 3 cut(s) 87, 290, 380
FspBI CTAG 2 cut(s) 677, 1044
GlaI GCGC 3 cut(s) 101, 179, 288
GluI GCNGC 3 cut(s) 87, 290, 380
GsaI CCCAGC 2 cut(s) 333, 622
HaeII RGCGCY 2 cut(s) 103, 290
HaeIII GGCC 1 cut(s) 859
HapII CCGG 2 cut(s) 818, 848
HhaI GCGC 3 cut(s) 102, 180, 289
Hin1II CATG 3 cut(s) 341, 760, 826
Hin6I GCGC 3 cut(s) 100, 178, 287
HinP1I GCGC 3 cut(s) 100, 178, 287
HinfI GANTC 7 cut(s) 10, 122, 140, 173, 203, 310, 413
HpaII CCGG 2 cut(s) 818, 848
HphI GGTGA 6 cut(s) 175, 496, 508, 863, 914, 961
Hpy188I TCNGA 3 cut(s) 112, 418, 992
Hpy188III TCNNGA 5 cut(s) 170, 193, 548, 602, 785
Hpy99I CGWCG 2 cut(s) 130, 987
HpyAV CCTTC 7 cut(s) 193, 262, 266, 493, 568, 646, 848
HpyCH4III ACNGT 1 cut(s) 949
HpyCH4V TGCA 3 cut(s) 316, 373, 379
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 92, 379, 970
HpyF3I CTNAG 6 cut(s) 17, 171, 614, 783, 866, 989
Hsp92II CATG 3 cut(s) 341, 760, 826
HspAI GCGC 3 cut(s) 100, 178, 287
Kzo9I GATC 4 cut(s) 297, 367, 555, 787
LmnI GCTCC 3 cut(s) 161, 700, 898
Lsp1109I GCAGC 2 cut(s) 276, 391
LweI GCATC 6 cut(s) 457, 541, 706, 895, 922, 982
MaeI CTAG 2 cut(s) 677, 1044
MaeIII GTNAC 2 cut(s) 230, 943
MalI GATC 4 cut(s) 299, 369, 557, 789
MboI GATC 4 cut(s) 297, 367, 555, 787
MflI RGATCY 1 cut(s) 787
MhlI GDGCHC 1 cut(s) 1035
MluCI AATT 6 cut(s) 323, 356, 597, 797, 977, 995
MlyI GAGTC 5 cut(s) 4, 116, 134, 182, 197
MmeI TCCRAC 2 cut(s) 135, 982
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 3 cut(s) 396, 645, 732
MslI CAYNNNNRTG 1 cut(s) 441
MspI CCGG 2 cut(s) 818, 848
MspR9I CCNGG 4 cut(s) 97, 849, 897, 1020
MvaI CCWGG 3 cut(s) 97, 897, 1020
MvnI CGCG 1 cut(s) 178
MwoI GCNNNNNNNGC 4 cut(s) 13, 92, 379, 970
NciI CCSGG 1 cut(s) 849
NdeII GATC 4 cut(s) 297, 367, 555, 787
NlaIII CATG 3 cut(s) 341, 760, 826
NlaIV GGNNCC 1 cut(s) 789
NspV TTCGAA 1 cut(s) 423
PaeR7I CTCGAG 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 2 cut(s) 310, 413
PkrI GCNGC 3 cut(s) 88, 291, 381
PleI GAGTC 5 cut(s) 4, 116, 134, 181, 197
PpsI GAGTC 5 cut(s) 4, 116, 134, 181, 197
Psp124BI GAGCTC 1 cut(s) 1035
Psp6I CCWGG 3 cut(s) 95, 895, 1018
PspFI CCCAGC 2 cut(s) 329, 618
PspGI CCWGG 3 cut(s) 95, 895, 1018
PspN4I GGNNCC 1 cut(s) 789
PspPI GGNCC 2 cut(s) 400, 857
PspXI VCTCGAGB 1 cut(s) 218
PstI CTGCAG 1 cut(s) 318
PsuI RGATCY 1 cut(s) 787
RsaI GTAC 1 cut(s) 816
RsaNI GTAC 1 cut(s) 815
RseI CAYNNNNRTG 1 cut(s) 441
SacI GAGCTC 1 cut(s) 1035
SaqAI TTAA 3 cut(s) 396, 645, 732
SatI GCNGC 3 cut(s) 87, 290, 380
Sau3AI GATC 4 cut(s) 297, 367, 555, 787
Sau96I GGNCC 2 cut(s) 400, 857
SchI GAGTC 5 cut(s) 4, 116, 134, 182, 197
ScrFI CCNGG 4 cut(s) 97, 849, 897, 1020
SduI GDGCHC 1 cut(s) 1035
SfaNI GCATC 6 cut(s) 457, 541, 706, 895, 922, 982
SfcI CTRYAG 1 cut(s) 314
Sfr274I CTCGAG 1 cut(s) 218
SfuI TTCGAA 1 cut(s) 423
SinI GGWCC 1 cut(s) 400
SlaI CTCGAG 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 441
SmlI CTYRAG 2 cut(s) 218, 602
SmoI CTYRAG 2 cut(s) 218, 602
SpeI ACTAGT 1 cut(s) 1043
Sse9I AATT 6 cut(s) 323, 356, 597, 797, 977, 995
SsiI CCGC 3 cut(s) 7, 46, 87
SspMI CTAG 2 cut(s) 677, 1044
SstI GAGCTC 1 cut(s) 1035
StyD4I CCNGG 4 cut(s) 95, 847, 895, 1018
StyI CCWWGG 2 cut(s) 471, 676
TaaI ACNGT 1 cut(s) 949
TaqI TCGA 4 cut(s) 219, 296, 303, 423
TasI AATT 6 cut(s) 323, 356, 597, 797, 977, 995
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 2 cut(s) 310, 413
Tru1I TTAA 3 cut(s) 396, 645, 732
Tru9I TTAA 3 cut(s) 396, 645, 732
TseI GCWGC 2 cut(s) 289, 379
TspDTI ATGAA 4 cut(s) 369, 459, 587, 839
TspGWI ACGGA 2 cut(s) 362, 971
VpaK11BI GGWCC 1 cut(s) 400
XapI RAATTY 1 cut(s) 597
XcmI CCANNNNNNNNNTGG 2 cut(s) 478, 867
XhoI CTCGAG 1 cut(s) 218
XmaJI CCTAGG 1 cut(s) 676
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 2 cut(s) 677, 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.