Rh2BG339400

Mitochondrial ribosomal subunit protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0006027
Physical Location & Seq
Reverse (-)
45259160 .. 45263389
4230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG339400.1

Sequence Viewer

Length: 1002 bp
ATGGAGGAATACTTGAAGGAAGGTAAGGAGGAGGCGCTGCCATCGATCCTCGAAGCGATTCTGCAGAGGAAATTGGCTGGGAAGCATGAGGACACGGATGATGAATTGGTGGATGATCTGCAAATGCAGCCATTGGAGAATGTTAAGGACCAAGAGTTTGAATCTGATTTCGAAGAAATCCACGACACCGATGAAGAGATTGACGACTTGTATGATGCCAAGGATGTAGTGGTGAAGAAGATGGTGAAGGATGAGTTCTTCAATATGGATGACAAAAAATGGGATGGTATTGTTCAGGATGCGATCAAGCACGGGATTATGAAGGATATGAGAGAGTGTGAGGAAATTCTTGAGGATATGCTTAGTTGGGACAAGCTCTTGCCAGATGACATTAAGAAGAAGGTAGAAGAGAAGTTCAATGACCTAGGGGATAGGTGTGAAAGAGGGGAGCTTGAACCTGAAGATGCTTACAAGTTGTTTAAGGAGTTTGAGGACGAGATTGTCATGGAATATACGAAAAAGGTGGAAGCTCAGGATCCCTCACAACTTGACGAGATAGCTGTACCGGACATGAAAAGAGACATAGATGACCCACTGGGTGAAGGGCCAATCCTTAGGTGGCAAACACGAGTGGTCTTTGCTCCTGGTGGTGATGCTTGGCATCCAAAGAATAGAAAAGTGAAGCTGTCTGTTACGGTGAAAGAACTCGGGCTTTCAAAGCATCAATTCCGTCGGCTCAGAGAATTGGTTGGAAAGCGATACAATCCAGGGAAAGATGAGCTCACTATTACTAGTGAGAGGTTTGAACACCGAGAGGAAAATAGAAAGGATTGCCTTAGGACTCTTCTTTCCCTCATTGAGGAAGCTGAGAAAGCTAACAAGCTGGCCGAGGATGCTAGAGTTTTGTATGTCAAGGAGAGATTAAGAGAAAATCCTGCATTCATGGAGAGACTGCGTAACAAGACAATGAGATTGCAAGGACATACCACAGTGACAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRP-S28

Protein Analysis

333

Amino Acids

39.17

Weight (kDa)

4.79

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRP-S28 PF10213 221 - 298 9e-18 Mitochondrial ribosomal subunit protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 500
AclWI GGATC 3 cut(s) 40, 530, 543
AcoI YGGCCR 1 cut(s) 885
AcsI RAATTY 1 cut(s) 345
AcuI CTGAAG 1 cut(s) 480
AdeI CACNNNGTG 1 cut(s) 599
AfaI GTAC 1 cut(s) 564
AfiI CCNNNNNNNGG 1 cut(s) 859
AgsI TTSAA 7 cut(s) 16, 161, 262, 418, 455, 717, 806
AhlI ACTAGT 1 cut(s) 791
AjnI CCWGG 2 cut(s) 643, 766
Alw21I GWGCWC 1 cut(s) 783
Alw26I GTCTC 2 cut(s) 573, 943
AlwI GGATC 3 cut(s) 40, 530, 543
Ama87I CYCGRG 1 cut(s) 707
AoxI GGCC 2 cut(s) 605, 885
ApeKI GCWGC 2 cut(s) 37, 127
ApoI RAATTY 1 cut(s) 345
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
Asp700I GAANNNNTTC 1 cut(s) 57
AspA2I CCTAGG 1 cut(s) 424
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 148, 605
AsuHPI GGTGA 5 cut(s) 244, 256, 611, 662, 709
AsuII TTCGAA 1 cut(s) 171
AvaI CYCGRG 1 cut(s) 707
AvaII GGWCC 1 cut(s) 148
AvrII CCTAGG 1 cut(s) 424
AxyI CCTNAGG 2 cut(s) 614, 836
BamHI GGATCC 1 cut(s) 535
BanII GRGCYC 1 cut(s) 783
BauI CACGAG 1 cut(s) 627
Bbv12I GWGCWC 1 cut(s) 783
BbvI GCAGC 2 cut(s) 24, 139
BccI CCATC 3 cut(s) 49, 235, 278
BciT130I CCWGG 2 cut(s) 645, 768
BcoDI GTCTC 2 cut(s) 573, 943
BcuI ACTAGT 1 cut(s) 791
BfaI CTAG 3 cut(s) 425, 792, 897
BfmI CTRYAG 1 cut(s) 62
BfoI RGCGCY 1 cut(s) 38
BisI GCNGC 2 cut(s) 38, 128
BlnI CCTAGG 1 cut(s) 424
BlsI GCNGC 2 cut(s) 39, 129
Bme1390I CCNGG 2 cut(s) 645, 768
Bme18I GGWCC 1 cut(s) 148
BmeT110I CYCGRG 1 cut(s) 707
BmgT120I GGNCC 2 cut(s) 148, 605
BmiI GGNNCC 1 cut(s) 537
BmrFI CCNGG 2 cut(s) 645, 768
BmrI ACTGGG 1 cut(s) 605
BmsI GCATC 7 cut(s) 205, 289, 454, 643, 670, 730, 883
BmuI ACTGGG 1 cut(s) 605
Bpu10I CCTNAGC 1 cut(s) 531
Bpu14I TTCGAA 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 371
Bsa29I ATCGAT 1 cut(s) 44
BsaJI CCNNGG 4 cut(s) 219, 424, 767, 888
BsaWI WCCGGW 1 cut(s) 565
Bsc4I CCNNNNNNNGG 1 cut(s) 859
Bse1I ACTGG 1 cut(s) 600
Bse21I CCTNAGG 2 cut(s) 614, 836
BseBI CCWGG 2 cut(s) 645, 768
BseCI ATCGAT 1 cut(s) 44
BseDI CCNNGG 4 cut(s) 219, 424, 767, 888
BseGI GGATG 9 cut(s) 103, 118, 229, 256, 274, 289, 304, 661, 898
BseLI CCNNNNNNNGG 1 cut(s) 859
BseMII CTCAG 3 cut(s) 545, 751, 858
BseNI ACTGG 1 cut(s) 600
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 2 cut(s) 24, 139
BseYI CCCAGC 1 cut(s) 77
BshFI GGCC 2 cut(s) 607, 887
BshVI ATCGAT 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 783
BsiHKCI CYCGRG 1 cut(s) 707
BsiSI CCGG 1 cut(s) 566
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 1 cut(s) 859
BsmAI GTCTC 2 cut(s) 573, 943
BsmFI GGGAC 1 cut(s) 383
BsmI GAATGC 1 cut(s) 938
BsnI GGCC 2 cut(s) 607, 887
BsoBI CYCGRG 1 cut(s) 707
Bsp119I TTCGAA 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 783
Bsp143I GATC 4 cut(s) 45, 115, 303, 535
BspANI GGCC 2 cut(s) 607, 887
BspCNI CTCAG 3 cut(s) 544, 750, 859
BspDI ATCGAT 1 cut(s) 44
BspLI GGNNCC 1 cut(s) 537
BspMAI CTGCAG 1 cut(s) 66
BspPI GGATC 3 cut(s) 40, 530, 543
BspT104I TTCGAA 1 cut(s) 171
BsrI ACTGG 1 cut(s) 600
BssECI CCNNGG 4 cut(s) 219, 424, 767, 888
BssMI GATC 4 cut(s) 45, 115, 303, 535
BssSI CACGAG 1 cut(s) 627
BssT1I CCWWGG 2 cut(s) 219, 424
Bst2BI CACGAG 1 cut(s) 627
Bst2UI CCWGG 2 cut(s) 645, 768
Bst4CI ACNGT 2 cut(s) 697, 991
Bst6I CTCTTC 3 cut(s) 189, 402, 849
BstBI TTCGAA 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 885
BstDEI CTNAG 6 cut(s) 362, 531, 614, 737, 836, 867
BstENI CCTNNNNNAGG 1 cut(s) 857
BstF5I GGATG 9 cut(s) 103, 118, 229, 256, 274, 289, 304, 661, 898
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 4 cut(s) 48, 118, 306, 538
BstMAI GTCTC 2 cut(s) 573, 943
BstMBI GATC 4 cut(s) 45, 115, 303, 535
BstMWI GCNNNNNNNGC 4 cut(s) 127, 718, 872, 893
BstNI CCWGG 2 cut(s) 645, 768
BstSCI CCNGG 2 cut(s) 643, 766
BstSFI CTRYAG 1 cut(s) 62
BstV1I GCAGC 2 cut(s) 24, 139
BstX2I RGATCY 1 cut(s) 535
BstYI RGATCY 1 cut(s) 535
Bsu15I ATCGAT 1 cut(s) 44
Bsu36I CCTNAGG 2 cut(s) 614, 836
BsuRI GGCC 2 cut(s) 607, 887
BsuTUI ATCGAT 1 cut(s) 44
BtsCI GGATG 9 cut(s) 103, 118, 229, 256, 274, 289, 304, 661, 898
BtsIMutI CAGTG 2 cut(s) 593, 996
Cac8I GCNNGC 1 cut(s) 885
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 148, 605
ClaI ATCGAT 1 cut(s) 44
Csp6I GTAC 1 cut(s) 563
CviAII CATG 4 cut(s) 86, 505, 571, 943
CviQI GTAC 1 cut(s) 563
DdeI CTNAG 6 cut(s) 362, 531, 614, 737, 836, 867
DpnI GATC 4 cut(s) 47, 117, 305, 537
DpnII GATC 4 cut(s) 45, 115, 303, 535
DraIII CACNNNGTG 1 cut(s) 599
DrdI GACNNNNNNGTC 1 cut(s) 500
DseDI GACNNNNNNGTC 1 cut(s) 500
EaeI YGGCCR 1 cut(s) 885
Eam1104I CTCTTC 3 cut(s) 189, 402, 849
EarI CTCTTC 3 cut(s) 189, 402, 849
Ecl136II GAGCTC 1 cut(s) 781
Eco130I CCWWGG 2 cut(s) 219, 424
Eco24I GRGCYC 1 cut(s) 783
Eco47I GGWCC 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 781
Eco57I CTGAAG 1 cut(s) 480
Eco81I CCTNAGG 2 cut(s) 614, 836
Eco88I CYCGRG 1 cut(s) 707
EcoICRI GAGCTC 1 cut(s) 781
EcoNI CCTNNNNNAGG 1 cut(s) 857
EcoRII CCWGG 2 cut(s) 643, 766
EcoT14I CCWWGG 2 cut(s) 219, 424
EcoT38I GRGCYC 1 cut(s) 783
ErhI CCWWGG 2 cut(s) 219, 424
FaeI CATG 4 cut(s) 89, 508, 574, 946
FaqI GGGAC 1 cut(s) 383
FatI CATG 4 cut(s) 85, 504, 570, 942
Fnu4HI GCNGC 2 cut(s) 38, 128
FokI GGATG 9 cut(s) 110, 125, 236, 263, 281, 296, 311, 648, 905
FriOI GRGCYC 1 cut(s) 783
Fsp4HI GCNGC 2 cut(s) 38, 128
FspBI CTAG 3 cut(s) 425, 792, 897
GlaI GCGC 1 cut(s) 36
GluI GCNGC 2 cut(s) 38, 128
GsaI CCCAGC 1 cut(s) 81
HaeII RGCGCY 1 cut(s) 38
HaeIII GGCC 2 cut(s) 607, 887
HapII CCGG 1 cut(s) 566
HhaI GCGC 1 cut(s) 37
Hin1II CATG 4 cut(s) 89, 508, 574, 946
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HinfI GANTC 3 cut(s) 58, 161, 841
HpaII CCGG 1 cut(s) 566
HphI GGTGA 5 cut(s) 244, 256, 611, 662, 709
Hpy188I TCNGA 2 cut(s) 166, 740
Hpy188III TCNNGA 3 cut(s) 296, 350, 533
Hpy99I CGWCG 1 cut(s) 735
HpyAV CCTTC 6 cut(s) 10, 14, 241, 316, 394, 596
HpyCH4III ACNGT 2 cut(s) 697, 991
HpyCH4V TGCA 5 cut(s) 64, 121, 127, 938, 976
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 718, 872, 893
HpyF3I CTNAG 6 cut(s) 362, 531, 614, 737, 836, 867
Hsp92II CATG 4 cut(s) 89, 508, 574, 946
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 4 cut(s) 45, 115, 303, 535
LmnI GCTCC 2 cut(s) 448, 646
Lsp1109I GCAGC 2 cut(s) 24, 139
LweI GCATC 7 cut(s) 205, 289, 454, 643, 670, 730, 883
MaeI CTAG 3 cut(s) 425, 792, 897
MaeIII GTNAC 3 cut(s) 691, 956, 991
MalI GATC 4 cut(s) 47, 117, 305, 537
MboI GATC 4 cut(s) 45, 115, 303, 535
MboII GAAGA 9 cut(s) 185, 206, 247, 250, 250, 409, 419, 473, 836
MflI RGATCY 1 cut(s) 535
MhlI GDGCHC 1 cut(s) 783
MluCI AATT 5 cut(s) 71, 104, 345, 725, 743
MlyI GAGTC 1 cut(s) 835
MmeI TCCRAC 1 cut(s) 730
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 4 cut(s) 144, 393, 480, 923
MspI CCGG 1 cut(s) 566
MspR9I CCNGG 2 cut(s) 645, 768
Mva1269I GAATGC 1 cut(s) 938
MvaI CCWGG 2 cut(s) 645, 768
MwoI GCNNNNNNNGC 4 cut(s) 127, 718, 872, 893
NdeII GATC 4 cut(s) 45, 115, 303, 535
NlaIII CATG 4 cut(s) 89, 508, 574, 946
NlaIV GGNNCC 1 cut(s) 537
NmeAIII GCCGAG 1 cut(s) 913
NmuCI GTSAC 1 cut(s) 991
NspV TTCGAA 1 cut(s) 171
PctI GAATGC 1 cut(s) 938
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 58, 161
PkrI GCNGC 2 cut(s) 39, 129
PleI GAGTC 1 cut(s) 835
PpsI GAGTC 1 cut(s) 835
Psp124BI GAGCTC 1 cut(s) 783
Psp6I CCWGG 2 cut(s) 643, 766
PspFI CCCAGC 1 cut(s) 77
PspGI CCWGG 2 cut(s) 643, 766
PspN4I GGNNCC 1 cut(s) 537
PspPI GGNCC 2 cut(s) 148, 605
PstI CTGCAG 1 cut(s) 66
PsuI RGATCY 1 cut(s) 535
RsaI GTAC 1 cut(s) 564
RsaNI GTAC 1 cut(s) 563
SacI GAGCTC 1 cut(s) 783
SaqAI TTAA 4 cut(s) 144, 393, 480, 923
SatI GCNGC 2 cut(s) 38, 128
Sau3AI GATC 4 cut(s) 45, 115, 303, 535
Sau96I GGNCC 2 cut(s) 148, 605
SchI GAGTC 1 cut(s) 835
ScrFI CCNGG 2 cut(s) 645, 768
SduI GDGCHC 1 cut(s) 783
SfaNI GCATC 7 cut(s) 205, 289, 454, 643, 670, 730, 883
SfcI CTRYAG 1 cut(s) 62
SfuI TTCGAA 1 cut(s) 171
SinI GGWCC 1 cut(s) 148
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SpeI ACTAGT 1 cut(s) 791
Sse9I AATT 5 cut(s) 71, 104, 345, 725, 743
SspMI CTAG 3 cut(s) 425, 792, 897
SstI GAGCTC 1 cut(s) 783
StyD4I CCNGG 2 cut(s) 643, 766
StyI CCWWGG 2 cut(s) 219, 424
TaaI ACNGT 2 cut(s) 697, 991
TaqI TCGA 3 cut(s) 44, 51, 171
TasI AATT 5 cut(s) 71, 104, 345, 725, 743
TfiI GAWTC 2 cut(s) 58, 161
Tru1I TTAA 4 cut(s) 144, 393, 480, 923
Tru9I TTAA 4 cut(s) 144, 393, 480, 923
TscAI CASTG 2 cut(s) 600, 996
TseFI GTSAC 1 cut(s) 991
TseI GCWGC 2 cut(s) 37, 127
Tsp45I GTSAC 1 cut(s) 991
TspDTI ATGAA 5 cut(s) 117, 207, 335, 587, 931
TspGWI ACGGA 2 cut(s) 110, 719
TspRI CASTG 2 cut(s) 600, 996
VpaK11BI GGWCC 1 cut(s) 148
XagI CCTNNNNNAGG 1 cut(s) 857
XapI RAATTY 1 cut(s) 345
XcmI CCANNNNNNNNNTGG 2 cut(s) 226, 615
XmaJI CCTAGG 1 cut(s) 424
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 3 cut(s) 425, 792, 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.