Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006027

Physical Location & Seq

Genomic Coordinates Reverse (-)

17399260 .. 17402452

Gene Structure 3193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G224900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGAGACGTGCTCTATTGAATAATGTCTCTCTCTACGCTCGCAATCGCCTTCTCTCCCTTCCAACCTGCAACCCTAATCCTAGCTCCTCACTCGTCCCACTCGCCGCTTCGACTCGGTCCCTACTCAGGCTTTTCTCGTCCGAAGACGACTCTTCCGCTGGAAGCTCCAATCCGTCTGCTGATTCGAGGGTGATCCCAACCAACAAGAAAGATGCCCCCGTTGAAGTCCAGGACATCAATAACAAAGAGCTGAAAGTGCGGATAGAGAAATACTTCAAGGGTGATGAGGAGGCGCTTCCGGCAATCCTAGAAGCGATTCTGCAGAGGAAATTGGCTGAGAAGCATGAGGAAACAGATGATGAGCTGATAGATGAACTGCAAATGAAGCCGCTGGATAATGTTAAGGACCAAGAGTTTGAATCAGATTTTGAGGAAATGCATGACACGGATGAAGAGATTGATAACTTGTATAACGCAAGGGATATAGTCATGAACAGGATGGTAAAAGATGAGTACTACAACATGGATGAGAATAAGTGGAATGATATTGTTGAGGATGCAATTCATCATGGGATTATGAAGGATACGAAAGAGTGTGAGGCAATTCTTGAGGATATGCTTAGCTGGGATAAGCTACTGCCAGATGACATGAAAAGGAAGGTTGAAGAGAAGTTCAATGACCTAGGGGATATGTGTGAAAGAGGGGAACTTGAGCCTGAAGAAGCTTACAAGTTGTTTAAGGAGTTTGAGGATGAGATTGTCATGGAATATGTGCAGAAGATGGAAGCCGATGGCCCCCCGAAATTTGACGAGACTGCTGTACCGGACGAGAAAAAGGATCTAGATGACCCTCCAGGTGAAGGGCCAATCCTTAGGTGGCAAACACGGGTAGTCTTTGCTCCTGGCGGTGATGCGTGGCATCCCAAGAATAGAAAAGTGAAACTGTCTGTCACAGTGAAAGAACTTGGGCTTTCAAAGCATCAATTCCGTCGGCTCAGAGAATTGGTTGGAAAGCGGTACAATCCAGGGAAAGATGAGCTTACAATTACTAGTGAGAGGTTTGAACACCGAGAAGAAAATAGAAAGGATTGCCTTAGGACTCTTCTTTCCCTCATCGAGGAAGCTGGGAAAGCTAACAAACTGGCTGAGGATGCTCGAGTTTCATATGTCAAGGAGAGATTAAGAGCAAATCCTGCATTCATGGAGAGGCTGCGTAACAAGACCATGGGATTGCAAGGAAAGAGCACAGTGCCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-S28

Protein Analysis

420

Amino Acids

48.36

Weight (kDa)

4.95

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18240 AT3G18240 AT4G21460 AT4G21460
fragaria_vesca	FvH4_6g26830 FvH4_6g26830 FvH4_6g26830 FvH4_6g26830
malus_domestica	MD06G1220500.v1.1 MD14G1229900.v1.1
prunus_persica	Prupe.5G224900_v2.0.a1
pyrus_communis	pycom06g19650 pycom14g19140
rosa_chinensis	RchiOBHm_Chr2g0128191 RchiOBHm_Chr2g0128201
rosa_laevigata	RLG00000018997
rosa_multiflora	Rmu_co8493575.1_g000001 Rmu_sc0000837.1_g000010 Rmu_sc0003465.1_g000002
rosa_roxburghii	Rroxscaffold_2G00115500 Rroxscaffold_2G00115960
rosa_rugosa	Rorug02G0278300
rosa_samantha	Rh2AG331200 Rh2BG339400 Rh2CG316900 Rh2DG356300
rosa_wichuraiana	Rw2G026790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	74
AciI	CCGC	6 cut(s)	105, 156, 259, 389, 906, 1015
AclWI	GGATC	2 cut(s)	187, 846
AcsI	RAATTY	1 cut(s)	803
AcuI	CTGAAG	1 cut(s)	738
AfaI	GTAC	3 cut(s)	515, 822, 1019
AfiI	CCNNNNNNNGG	3 cut(s)	126, 860, 1117
AgsI	TTSAA	8 cut(s)	19, 224, 277, 419, 665, 676, 975, 1064
AhlI	ACTAGT	1 cut(s)	1049
AjiI	CACGTC	1 cut(s)	8
AjnI	CCWGG	4 cut(s)	228, 853, 901, 1024
Alw21I	GWGCWC	2 cut(s)	13, 1247
Alw26I	GTCTC	2 cut(s)	31, 806
AlwI	GGATC	2 cut(s)	187, 846
AlwNI	CAGNNNCTG	1 cut(s)	1253
Ama87I	CYCGRG	1 cut(s)	1155
AoxI	GGCC	2 cut(s)	793, 863
ApeKI	GCWGC	1 cut(s)	1210
ApoI	RAATTY	1 cut(s)	803
ArsI	GACNNNNNNTTYG	2 cut(s)	398, 430
Asp700I	GAANNNNTTC	2 cut(s)	272, 315
AspA2I	CCTAGG	1 cut(s)	682
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	4 cut(s)	117, 406, 794, 863
AsuHPI	GGTGA	4 cut(s)	202, 293, 869, 920
AvaI	CYCGRG	1 cut(s)	1155
AvaII	GGWCC	2 cut(s)	117, 406
AvrII	CCTAGG	1 cut(s)	682
AxyI	CCTNAGG	2 cut(s)	872, 1094
BaeI	ACNNNNGTAYC	2 cut(s)	804, 837
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	2 cut(s)	13, 1247
BbvCI	CCTCAGC	1 cut(s)	1146
BbvI	GCAGC	1 cut(s)	1197
BccI	CCATC	3 cut(s)	493, 775, 785
BciT130I	CCWGG	4 cut(s)	230, 855, 903, 1026
BciVI	GTATCC	1 cut(s)	577
BcoDI	GTCTC	2 cut(s)	31, 806
BcuI	ACTAGT	1 cut(s)	1049
BfaI	CTAG	5 cut(s)	81, 308, 683, 842, 1050
BfmI	CTRYAG	1 cut(s)	320
BfoI	RGCGCY	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	74
BfuI	GTATCC	1 cut(s)	577
BisI	GCNGC	3 cut(s)	105, 389, 1211
BlnI	CCTAGG	1 cut(s)	682
BlpI	GCTNAGC	1 cut(s)	620
BlsI	GCNGC	3 cut(s)	106, 390, 1212
BmcAI	AGTACT	1 cut(s)	515
Bme1390I	CCNGG	4 cut(s)	230, 855, 903, 1026
Bme18I	GGWCC	2 cut(s)	117, 406
BmeT110I	CYCGRG	1 cut(s)	1155
BmgBI	CACGTC	1 cut(s)	8
BmgT120I	GGNCC	4 cut(s)	117, 406, 794, 863
BmiI	GGNNCC	2 cut(s)	119, 796
BmrFI	CCNGG	4 cut(s)	230, 855, 903, 1026
BmsI	GCATC	6 cut(s)	202, 547, 901, 928, 988, 1141
BpiI	GAAGAC	1 cut(s)	150
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	837
Bpu10I	CCTNAGC	1 cut(s)	1146
Bpu1102I	GCTNAGC	1 cut(s)	620
BpuEI	CTTGAG	2 cut(s)	629, 731
BsaJI	CCNNGG	3 cut(s)	682, 1025, 1224
BsaWI	WCCGGW	1 cut(s)	823
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 860, 1117
Bse1I	ACTGG	1 cut(s)	1146
Bse21I	CCTNAGG	2 cut(s)	872, 1094
BseBI	CCWGG	4 cut(s)	230, 855, 903, 1026
BseDI	CCNNGG	3 cut(s)	682, 1025, 1224
BseGI	GGATG	7 cut(s)	454, 504, 532, 562, 757, 919, 1156
BseLI	CCNNNNNNNGG	3 cut(s)	126, 860, 1117
BseMII	CTCAG	4 cut(s)	139, 327, 1009, 1137
BseNI	ACTGG	1 cut(s)	1146
BseRI	GAGGAG	2 cut(s)	76, 302
BseXI	GCAGC	1 cut(s)	1197
BseYI	CCCAGC	2 cut(s)	624, 1124
BsgI	GTGCAG	1 cut(s)	794
BshFI	GGCC	2 cut(s)	795, 865
BsiHKAI	GWGCWC	2 cut(s)	13, 1247
BsiHKCI	CYCGRG	1 cut(s)	1155
BsiSI	CCGG	2 cut(s)	299, 824
BslFI	GGGAC	2 cut(s)	80, 103
BslI	CCNNNNNNNGG	3 cut(s)	126, 860, 1117
BsmAI	GTCTC	2 cut(s)	31, 806
BsmFI	GGGAC	2 cut(s)	80, 103
BsmI	GAATGC	1 cut(s)	1196
BsnI	GGCC	2 cut(s)	795, 865
BsoBI	CYCGRG	1 cut(s)	1155
Bsp1286I	GDGCHC	2 cut(s)	13, 1247
Bsp143I	GATC	2 cut(s)	192, 838
Bsp1720I	GCTNAGC	1 cut(s)	620
Bsp19I	CCATGG	1 cut(s)	1224
BspACI	CCGC	6 cut(s)	105, 156, 259, 389, 906, 1015
BspANI	GGCC	2 cut(s)	795, 865
BspCNI	CTCAG	4 cut(s)	138, 328, 1008, 1138
BspHI	TCATGA	1 cut(s)	489
BspLI	GGNNCC	2 cut(s)	119, 796
BspMAI	CTGCAG	1 cut(s)	324
BspMI	ACCTGC	1 cut(s)	74
BspPI	GGATC	2 cut(s)	187, 846
BsrI	ACTGG	1 cut(s)	1146
BssECI	CCNNGG	3 cut(s)	682, 1025, 1224
BssMI	GATC	2 cut(s)	192, 838
BssT1I	CCWWGG	2 cut(s)	682, 1224
Bst2UI	CCWGG	4 cut(s)	230, 855, 903, 1026
Bst4CI	ACNGT	3 cut(s)	945, 955, 1249
Bst6I	CTCTTC	4 cut(s)	157, 447, 660, 1107
BstAPI	GCANNNNNTGC	1 cut(s)	1193
BstC8I	GCNNGC	2 cut(s)	40, 1254
BstDEI	CTNAG	7 cut(s)	125, 336, 620, 872, 995, 1094, 1146
BstDSI	CCRYGG	1 cut(s)	1224
BstENI	CCTNNNNNAGG	1 cut(s)	1115
BstF5I	GGATG	7 cut(s)	454, 504, 532, 562, 757, 919, 1156
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	2 cut(s)	195, 841
BstMAI	GTCTC	2 cut(s)	31, 806
BstMBI	GATC	2 cut(s)	192, 838
BstMWI	GCNNNNNNNGC	7 cut(s)	256, 299, 385, 976, 1130, 1151, 1193
BstNI	CCWGG	4 cut(s)	230, 855, 903, 1026
BstSCI	CCNGG	4 cut(s)	228, 853, 901, 1024
BstSFI	CTRYAG	1 cut(s)	320
BstV1I	GCAGC	1 cut(s)	1197
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	838
BstYI	RGATCY	1 cut(s)	838
Bsu36I	CCTNAGG	2 cut(s)	872, 1094
BsuI	GTATCC	1 cut(s)	577
BsuRI	GGCC	2 cut(s)	795, 865
BtgI	CCRYGG	1 cut(s)	1224
BtrI	CACGTC	1 cut(s)	8
BtsCI	GGATG	7 cut(s)	454, 504, 532, 562, 757, 919, 1156
BtsIMutI	CAGTG	2 cut(s)	960, 1254
BveI	ACCTGC	1 cut(s)	74
Cac8I	GCNNGC	2 cut(s)	40, 1254
CaiI	CAGNNNCTG	1 cut(s)	1253
CciI	TCATGA	1 cut(s)	489
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	4 cut(s)	117, 406, 794, 863
Csp6I	GTAC	3 cut(s)	514, 821, 1018
CviAII	CATG	9 cut(s)	344, 440, 490, 523, 569, 649, 763, 1201, 1225
CviQI	GTAC	3 cut(s)	514, 821, 1018
DdeI	CTNAG	7 cut(s)	125, 336, 620, 872, 995, 1094, 1146
DpnI	GATC	2 cut(s)	194, 840
DpnII	GATC	2 cut(s)	192, 838
Eam1104I	CTCTTC	4 cut(s)	157, 447, 660, 1107
EarI	CTCTTC	4 cut(s)	157, 447, 660, 1107
Eco130I	CCWWGG	2 cut(s)	682, 1224
Eco47I	GGWCC	2 cut(s)	117, 406
Eco57I	CTGAAG	1 cut(s)	738
Eco81I	CCTNAGG	2 cut(s)	872, 1094
Eco88I	CYCGRG	1 cut(s)	1155
EcoNI	CCTNNNNNAGG	1 cut(s)	1115
EcoRII	CCWGG	4 cut(s)	228, 853, 901, 1024
EcoT14I	CCWWGG	2 cut(s)	682, 1224
EcoT22I	ATGCAT	1 cut(s)	441
ErhI	CCWWGG	2 cut(s)	682, 1224
FaeI	CATG	9 cut(s)	347, 443, 493, 526, 572, 652, 766, 1204, 1228
FalI	AAGNNNNNCTT	2 cut(s)	1023, 1055
FaqI	GGGAC	2 cut(s)	80, 103
FatI	CATG	9 cut(s)	343, 439, 489, 522, 568, 648, 762, 1200, 1224
FauNDI	CATATG	1 cut(s)	1165
Fnu4HI	GCNGC	3 cut(s)	105, 389, 1211
FokI	GGATG	7 cut(s)	461, 511, 539, 569, 764, 906, 1163
Fsp4HI	GCNGC	3 cut(s)	105, 389, 1211
FspBI	CTAG	5 cut(s)	81, 308, 683, 842, 1050
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	3 cut(s)	105, 389, 1211
GsaI	CCCAGC	2 cut(s)	628, 1128
GsuI	CTGGAG	1 cut(s)	837
HaeII	RGCGCY	1 cut(s)	296
HaeIII	GGCC	2 cut(s)	795, 865
HapII	CCGG	2 cut(s)	299, 824
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	9 cut(s)	347, 443, 493, 526, 572, 652, 766, 1204, 1228
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HindIII	AAGCTT	1 cut(s)	723
HinfI	GANTC	6 cut(s)	112, 149, 182, 316, 419, 1099
HpaII	CCGG	2 cut(s)	299, 824
HphI	GGTGA	4 cut(s)	202, 293, 869, 920
Hpy188I	TCNGA	3 cut(s)	142, 424, 998
Hpy188III	TCNNGA	3 cut(s)	490, 608, 842
Hpy99I	CGWCG	1 cut(s)	993
HpyAV	CCTTC	5 cut(s)	59, 68, 574, 652, 854
HpyCH4III	ACNGT	3 cut(s)	945, 955, 1249
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	8 cut(s)	69, 322, 379, 439, 560, 775, 1196, 1234
HpyF10VI	GCNNNNNNNGC	7 cut(s)	256, 299, 385, 976, 1130, 1151, 1193
HpyF3I	CTNAG	7 cut(s)	125, 336, 620, 872, 995, 1094, 1146
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	9 cut(s)	347, 443, 493, 526, 572, 652, 766, 1204, 1228
HspAI	GCGC	1 cut(s)	293
Kzo9I	GATC	2 cut(s)	192, 838
LmnI	GCTCC	3 cut(s)	89, 170, 904
Lsp1109I	GCAGC	1 cut(s)	1197
LweI	GCATC	6 cut(s)	202, 547, 901, 928, 988, 1141
MaeI	CTAG	5 cut(s)	81, 308, 683, 842, 1050
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	2 cut(s)	949, 1214
MalI	GATC	2 cut(s)	194, 840
MboI	GATC	2 cut(s)	192, 838
MboII	GAAGA	8 cut(s)	144, 155, 464, 677, 731, 790, 1085, 1094
MflI	RGATCY	1 cut(s)	838
MhlI	GDGCHC	2 cut(s)	13, 1247
MluCI	AATT	7 cut(s)	329, 561, 603, 803, 983, 1001, 1044
MlyI	GAGTC	3 cut(s)	106, 143, 1093
MmeI	TCCRAC	2 cut(s)	86, 988
Mph1103I	ATGCAT	1 cut(s)	441
MroXI	GAANNNNTTC	2 cut(s)	272, 315
MseI	TTAA	3 cut(s)	402, 738, 1181
MspA1I	CMGCKG	2 cut(s)	158, 391
MspI	CCGG	2 cut(s)	299, 824
MspR9I	CCNGG	4 cut(s)	230, 855, 903, 1026
Mva1269I	GAATGC	1 cut(s)	1196
MvaI	CCWGG	4 cut(s)	230, 855, 903, 1026
MwoI	GCNNNNNNNGC	7 cut(s)	256, 299, 385, 976, 1130, 1151, 1193
NcoI	CCATGG	1 cut(s)	1224
NdeI	CATATG	1 cut(s)	1165
NdeII	GATC	2 cut(s)	192, 838
NlaIII	CATG	9 cut(s)	347, 443, 493, 526, 572, 652, 766, 1204, 1228
NlaIV	GGNNCC	2 cut(s)	119, 796
NmuCI	GTSAC	1 cut(s)	949
NsiI	ATGCAT	1 cut(s)	441
PaeR7I	CTCGAG	1 cut(s)	1155
PagI	TCATGA	1 cut(s)	489
PctI	GAATGC	1 cut(s)	1196
PdmI	GAANNNNTTC	2 cut(s)	272, 315
PfeI	GAWTC	3 cut(s)	182, 316, 419
PflFI	GACNNNGTC	1 cut(s)	115
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	3 cut(s)	106, 390, 1212
PleI	GAGTC	3 cut(s)	106, 143, 1093
PpsI	GAGTC	3 cut(s)	106, 143, 1093
Psp6I	CCWGG	4 cut(s)	228, 853, 901, 1024
PspFI	CCCAGC	2 cut(s)	624, 1124
PspGI	CCWGG	4 cut(s)	228, 853, 901, 1024
PspN4I	GGNNCC	2 cut(s)	119, 796
PspPI	GGNCC	4 cut(s)	117, 406, 794, 863
PspXI	VCTCGAGB	1 cut(s)	1155
PstI	CTGCAG	1 cut(s)	324
PstNI	CAGNNNCTG	1 cut(s)	1253
PsuI	RGATCY	1 cut(s)	838
PsyI	GACNNNGTC	1 cut(s)	115
RsaI	GTAC	3 cut(s)	515, 822, 1019
RsaNI	GTAC	3 cut(s)	514, 821, 1018
SaqAI	TTAA	3 cut(s)	402, 738, 1181
SatI	GCNGC	3 cut(s)	105, 389, 1211
Sau3AI	GATC	2 cut(s)	192, 838
Sau96I	GGNCC	4 cut(s)	117, 406, 794, 863
ScaI	AGTACT	1 cut(s)	515
SchI	GAGTC	3 cut(s)	106, 143, 1093
ScrFI	CCNGG	4 cut(s)	230, 855, 903, 1026
SduI	GDGCHC	2 cut(s)	13, 1247
SfaNI	GCATC	6 cut(s)	202, 547, 901, 928, 988, 1141
SfcI	CTRYAG	1 cut(s)	320
Sfr274I	CTCGAG	1 cut(s)	1155
SinI	GGWCC	2 cut(s)	117, 406
SlaI	CTCGAG	1 cut(s)	1155
SmlI	CTYRAG	3 cut(s)	608, 710, 1155
SmoI	CTYRAG	3 cut(s)	608, 710, 1155
SpeI	ACTAGT	1 cut(s)	1049
Sse9I	AATT	7 cut(s)	329, 561, 603, 803, 983, 1001, 1044
SsiI	CCGC	6 cut(s)	105, 156, 259, 389, 906, 1015
SspMI	CTAG	5 cut(s)	81, 308, 683, 842, 1050
StyD4I	CCNGG	4 cut(s)	228, 853, 901, 1024
StyI	CCWWGG	2 cut(s)	682, 1224
TaaI	ACNGT	3 cut(s)	945, 955, 1249
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	4 cut(s)	110, 185, 1116, 1156
TaqII	GACCGA	1 cut(s)	105
TasI	AATT	7 cut(s)	329, 561, 603, 803, 983, 1001, 1044
TatI	WGTACW	1 cut(s)	513
TauI	GCSGC	2 cut(s)	107, 391
TfiI	GAWTC	3 cut(s)	182, 316, 419
Tru1I	TTAA	3 cut(s)	402, 738, 1181
Tru9I	TTAA	3 cut(s)	402, 738, 1181
TscAI	CASTG	2 cut(s)	960, 1254
TseFI	GTSAC	1 cut(s)	949
TseI	GCWGC	1 cut(s)	1210
Tsp45I	GTSAC	1 cut(s)	949
TspDTI	ATGAA	9 cut(s)	387, 398, 465, 506, 554, 593, 665, 1152, 1189
TspGWI	ACGGA	3 cut(s)	162, 461, 977
TspRI	CASTG	2 cut(s)	960, 1254
Tth111I	GACNNNGTC	1 cut(s)	115
VpaK11BI	GGWCC	2 cut(s)	117, 406
XagI	CCTNNNNNAGG	1 cut(s)	1115
XapI	RAATTY	1 cut(s)	803
XbaI	TCTAGA	1 cut(s)	841
XcmI	CCANNNNNNNNNTGG	1 cut(s)	873
XhoI	CTCGAG	1 cut(s)	1155
XmaJI	CCTAGG	1 cut(s)	682
XmnI	GAANNNNTTC	2 cut(s)	272, 315
XspI	CTAG	5 cut(s)	81, 308, 683, 842, 1050
ZrmI	AGTACT	1 cut(s)	515
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.