Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8493575.1

Orthogroup ID

OG0006027

Physical Location & Seq

Genomic Coordinates Forward (+)

65 .. 1973

Gene Structure 1909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8493575.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

atggaggaatacttgaaggaaggtaaggaggaggcgctgccatcgatcctcgaagcgattctgcagaggaaattggctgggaagcatgaggacacggatgatgaattggtggatgatctgcaaatgcagccattggagaatgttaaggaccaagagtttgaatctgatttcgaagaaatccacgacaccgatgaagagattgatgacttgtatgatgccaaggatgtagtggtgaagaagatggtgaaggatgagttcttcaatatggatgacaaaaaatgggatggtattgttcaggatgcgatcaagcacgggattatgaaggatatgagagagtgtgaggaaattcttgaggatatgcttagttgggacaagcttttgccagatgacattaagaagaaggtagaagagaagttcaatgacctaggggataggtgtgaaagaggggagcttgaacctgaagatgcttacaagttgtttaaggagtttgaggacgagattgtcatggaatatacgaaaaaggtggaagctcaggatccctcacaacttgacgagatagctgtaccggacatgaaaagagacatagatgacccaccgggtgaagggccaatccttaggtggcaaacacgagtggtctttgctcctggtggtgatgcttggcatccaaagaatagaaaagtgaagctgtctgttacggtgaaagaactcgggctttcaaagcatcaattccgtcggctcagagaattggttggaaagcgatacaatccagggaaagatgagctcactattactagtgagaggtttgaacaccgagaggaaaatagaaaggattgccttaggactcttctttccctcattgaggaagctgagaaagctaacaagctggccgaggatgctagagttttgtatgtcaaggagagattaagagaaaatcctgcattcatggagagactgcgtaacaagacaatgagattgcaaggacataccacagtgacagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-S28

Protein Analysis

333

Amino Acids

39.15

Weight (kDa)

4.79

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18240 AT3G18240 AT4G21460 AT4G21460
fragaria_vesca	FvH4_6g26830 FvH4_6g26830 FvH4_6g26830 FvH4_6g26830
malus_domestica	MD06G1220500.v1.1 MD14G1229900.v1.1
prunus_persica	Prupe.5G224900_v2.0.a1
pyrus_communis	pycom06g19650 pycom14g19140
rosa_chinensis	RchiOBHm_Chr2g0128191 RchiOBHm_Chr2g0128201
rosa_laevigata	RLG00000018997
rosa_multiflora	Rmu_co8493575.1_g000001 Rmu_sc0000837.1_g000010 Rmu_sc0003465.1_g000002
rosa_roxburghii	Rroxscaffold_2G00115500 Rroxscaffold_2G00115960
rosa_rugosa	Rorug02G0278300
rosa_samantha	Rh2AG331200 Rh2BG339400 Rh2CG316900 Rh2DG356300
rosa_wichuraiana	Rw2G026790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	500
AclWI	GGATC	3 cut(s)	40, 530, 543
AcoI	YGGCCR	1 cut(s)	885
AcsI	RAATTY	1 cut(s)	345
AcuI	CTGAAG	1 cut(s)	480
AdeI	CACNNNGTG	1 cut(s)	599
AfaI	GTAC	1 cut(s)	564
AfiI	CCNNNNNNNGG	2 cut(s)	602, 859
AgsI	TTSAA	7 cut(s)	16, 161, 262, 418, 455, 717, 806
AhlI	ACTAGT	1 cut(s)	791
AjnI	CCWGG	2 cut(s)	643, 766
Alw21I	GWGCWC	1 cut(s)	783
Alw26I	GTCTC	2 cut(s)	573, 943
AlwI	GGATC	3 cut(s)	40, 530, 543
Ama87I	CYCGRG	1 cut(s)	707
AoxI	GGCC	2 cut(s)	605, 885
ApeKI	GCWGC	2 cut(s)	37, 127
ApoI	RAATTY	1 cut(s)	345
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
Asp700I	GAANNNNTTC	1 cut(s)	57
AspA2I	CCTAGG	1 cut(s)	424
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	148, 605
AsuC2I	CCSGG	1 cut(s)	597
AsuHPI	GGTGA	5 cut(s)	244, 256, 611, 662, 709
AsuII	TTCGAA	1 cut(s)	171
AvaI	CYCGRG	1 cut(s)	707
AvaII	GGWCC	1 cut(s)	148
AvrII	CCTAGG	1 cut(s)	424
AxyI	CCTNAGG	2 cut(s)	614, 836
BamHI	GGATCC	1 cut(s)	535
BanII	GRGCYC	1 cut(s)	783
BauI	CACGAG	1 cut(s)	627
Bbv12I	GWGCWC	1 cut(s)	783
BbvI	GCAGC	2 cut(s)	24, 139
BccI	CCATC	3 cut(s)	49, 235, 278
BciT130I	CCWGG	2 cut(s)	645, 768
BcnI	CCSGG	1 cut(s)	597
BcoDI	GTCTC	2 cut(s)	573, 943
BcuI	ACTAGT	1 cut(s)	791
BfaI	CTAG	3 cut(s)	425, 792, 897
BfmI	CTRYAG	1 cut(s)	62
BfoI	RGCGCY	1 cut(s)	38
BisI	GCNGC	2 cut(s)	38, 128
BlnI	CCTAGG	1 cut(s)	424
BlsI	GCNGC	2 cut(s)	39, 129
Bme1390I	CCNGG	3 cut(s)	597, 645, 768
Bme18I	GGWCC	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	707
BmgT120I	GGNCC	2 cut(s)	148, 605
BmiI	GGNNCC	1 cut(s)	537
BmrFI	CCNGG	3 cut(s)	597, 645, 768
BmsI	GCATC	7 cut(s)	205, 289, 454, 643, 670, 730, 883
Bpu10I	CCTNAGC	1 cut(s)	531
Bpu14I	TTCGAA	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	597
Bsa29I	ATCGAT	1 cut(s)	44
BsaJI	CCNNGG	4 cut(s)	219, 424, 767, 888
BsaWI	WCCGGW	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	2 cut(s)	602, 859
Bse21I	CCTNAGG	2 cut(s)	614, 836
BseBI	CCWGG	2 cut(s)	645, 768
BseCI	ATCGAT	1 cut(s)	44
BseDI	CCNNGG	4 cut(s)	219, 424, 767, 888
BseGI	GGATG	9 cut(s)	103, 118, 229, 256, 274, 289, 304, 661, 898
BseLI	CCNNNNNNNGG	2 cut(s)	602, 859
BseMII	CTCAG	3 cut(s)	545, 751, 858
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	24, 139
BseYI	CCCAGC	1 cut(s)	77
BshFI	GGCC	2 cut(s)	607, 887
BshVI	ATCGAT	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	783
BsiHKCI	CYCGRG	1 cut(s)	707
BsiSI	CCGG	2 cut(s)	566, 596
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	2 cut(s)	602, 859
BsmAI	GTCTC	2 cut(s)	573, 943
BsmFI	GGGAC	1 cut(s)	383
BsmI	GAATGC	1 cut(s)	938
BsnI	GGCC	2 cut(s)	607, 887
BsoBI	CYCGRG	1 cut(s)	707
Bsp119I	TTCGAA	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	783
Bsp143I	GATC	4 cut(s)	45, 115, 303, 535
BspANI	GGCC	2 cut(s)	607, 887
BspCNI	CTCAG	3 cut(s)	544, 750, 859
BspDI	ATCGAT	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	537
BspMAI	CTGCAG	1 cut(s)	66
BspPI	GGATC	3 cut(s)	40, 530, 543
BspT104I	TTCGAA	1 cut(s)	171
BssECI	CCNNGG	4 cut(s)	219, 424, 767, 888
BssMI	GATC	4 cut(s)	45, 115, 303, 535
BssSI	CACGAG	1 cut(s)	627
BssT1I	CCWWGG	2 cut(s)	219, 424
Bst2BI	CACGAG	1 cut(s)	627
Bst2UI	CCWGG	2 cut(s)	645, 768
Bst4CI	ACNGT	2 cut(s)	697, 991
Bst6I	CTCTTC	3 cut(s)	189, 402, 849
BstBI	TTCGAA	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	885
BstDEI	CTNAG	6 cut(s)	362, 531, 614, 737, 836, 867
BstENI	CCTNNNNNAGG	1 cut(s)	857
BstF5I	GGATG	9 cut(s)	103, 118, 229, 256, 274, 289, 304, 661, 898
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	4 cut(s)	48, 118, 306, 538
BstMAI	GTCTC	2 cut(s)	573, 943
BstMBI	GATC	4 cut(s)	45, 115, 303, 535
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 718, 872, 893
BstNI	CCWGG	2 cut(s)	645, 768
BstSCI	CCNGG	3 cut(s)	595, 643, 766
BstSFI	CTRYAG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	24, 139
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
Bsu15I	ATCGAT	1 cut(s)	44
Bsu36I	CCTNAGG	2 cut(s)	614, 836
BsuRI	GGCC	2 cut(s)	607, 887
BsuTUI	ATCGAT	1 cut(s)	44
BtsCI	GGATG	9 cut(s)	103, 118, 229, 256, 274, 289, 304, 661, 898
BtsIMutI	CAGTG	1 cut(s)	996
Cac8I	GCNNGC	1 cut(s)	885
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	148, 605
ClaI	ATCGAT	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	563
CviAII	CATG	4 cut(s)	86, 505, 571, 943
CviQI	GTAC	1 cut(s)	563
DdeI	CTNAG	6 cut(s)	362, 531, 614, 737, 836, 867
DpnI	GATC	4 cut(s)	47, 117, 305, 537
DpnII	GATC	4 cut(s)	45, 115, 303, 535
DraIII	CACNNNGTG	1 cut(s)	599
DrdI	GACNNNNNNGTC	1 cut(s)	500
DseDI	GACNNNNNNGTC	1 cut(s)	500
EaeI	YGGCCR	1 cut(s)	885
Eam1104I	CTCTTC	3 cut(s)	189, 402, 849
EarI	CTCTTC	3 cut(s)	189, 402, 849
Ecl136II	GAGCTC	1 cut(s)	781
Eco130I	CCWWGG	2 cut(s)	219, 424
Eco24I	GRGCYC	1 cut(s)	783
Eco47I	GGWCC	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	781
Eco57I	CTGAAG	1 cut(s)	480
Eco81I	CCTNAGG	2 cut(s)	614, 836
Eco88I	CYCGRG	1 cut(s)	707
EcoICRI	GAGCTC	1 cut(s)	781
EcoNI	CCTNNNNNAGG	1 cut(s)	857
EcoRII	CCWGG	2 cut(s)	643, 766
EcoT14I	CCWWGG	2 cut(s)	219, 424
EcoT38I	GRGCYC	1 cut(s)	783
ErhI	CCWWGG	2 cut(s)	219, 424
FaeI	CATG	4 cut(s)	89, 508, 574, 946
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	4 cut(s)	85, 504, 570, 942
Fnu4HI	GCNGC	2 cut(s)	38, 128
FokI	GGATG	9 cut(s)	110, 125, 236, 263, 281, 296, 311, 648, 905
FriOI	GRGCYC	1 cut(s)	783
Fsp4HI	GCNGC	2 cut(s)	38, 128
FspBI	CTAG	3 cut(s)	425, 792, 897
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	2 cut(s)	38, 128
GsaI	CCCAGC	1 cut(s)	81
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	607, 887
HapII	CCGG	2 cut(s)	566, 596
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	4 cut(s)	89, 508, 574, 946
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	3 cut(s)	58, 161, 841
HpaII	CCGG	2 cut(s)	566, 596
HphI	GGTGA	5 cut(s)	244, 256, 611, 662, 709
Hpy188I	TCNGA	2 cut(s)	166, 740
Hpy188III	TCNNGA	3 cut(s)	296, 350, 533
Hpy99I	CGWCG	1 cut(s)	735
HpyAV	CCTTC	6 cut(s)	10, 14, 241, 316, 394, 596
HpyCH4III	ACNGT	2 cut(s)	697, 991
HpyCH4V	TGCA	5 cut(s)	64, 121, 127, 938, 976
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 718, 872, 893
HpyF3I	CTNAG	6 cut(s)	362, 531, 614, 737, 836, 867
Hsp92II	CATG	4 cut(s)	89, 508, 574, 946
HspAI	GCGC	1 cut(s)	35
Kzo9I	GATC	4 cut(s)	45, 115, 303, 535
LmnI	GCTCC	2 cut(s)	448, 646
Lsp1109I	GCAGC	2 cut(s)	24, 139
LweI	GCATC	7 cut(s)	205, 289, 454, 643, 670, 730, 883
MaeI	CTAG	3 cut(s)	425, 792, 897
MaeIII	GTNAC	3 cut(s)	691, 956, 991
MalI	GATC	4 cut(s)	47, 117, 305, 537
MboI	GATC	4 cut(s)	45, 115, 303, 535
MboII	GAAGA	9 cut(s)	185, 206, 247, 250, 250, 409, 419, 473, 836
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	1 cut(s)	783
MluCI	AATT	5 cut(s)	71, 104, 345, 725, 743
MlyI	GAGTC	1 cut(s)	835
MmeI	TCCRAC	1 cut(s)	730
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	4 cut(s)	144, 393, 480, 923
MspI	CCGG	2 cut(s)	566, 596
MspR9I	CCNGG	3 cut(s)	597, 645, 768
Mva1269I	GAATGC	1 cut(s)	938
MvaI	CCWGG	2 cut(s)	645, 768
MwoI	GCNNNNNNNGC	4 cut(s)	127, 718, 872, 893
NciI	CCSGG	1 cut(s)	597
NdeII	GATC	4 cut(s)	45, 115, 303, 535
NlaIII	CATG	4 cut(s)	89, 508, 574, 946
NlaIV	GGNNCC	1 cut(s)	537
NmeAIII	GCCGAG	1 cut(s)	913
NmuCI	GTSAC	1 cut(s)	991
NspV	TTCGAA	1 cut(s)	171
PctI	GAATGC	1 cut(s)	938
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	2 cut(s)	58, 161
PkrI	GCNGC	2 cut(s)	39, 129
PleI	GAGTC	1 cut(s)	835
PpsI	GAGTC	1 cut(s)	835
Psp124BI	GAGCTC	1 cut(s)	783
Psp6I	CCWGG	2 cut(s)	643, 766
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	2 cut(s)	643, 766
PspN4I	GGNNCC	1 cut(s)	537
PspPI	GGNCC	2 cut(s)	148, 605
PstI	CTGCAG	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	535
RsaI	GTAC	1 cut(s)	564
RsaNI	GTAC	1 cut(s)	563
SacI	GAGCTC	1 cut(s)	783
SaqAI	TTAA	4 cut(s)	144, 393, 480, 923
SatI	GCNGC	2 cut(s)	38, 128
Sau3AI	GATC	4 cut(s)	45, 115, 303, 535
Sau96I	GGNCC	2 cut(s)	148, 605
SchI	GAGTC	1 cut(s)	835
ScrFI	CCNGG	3 cut(s)	597, 645, 768
SduI	GDGCHC	1 cut(s)	783
SfaNI	GCATC	7 cut(s)	205, 289, 454, 643, 670, 730, 883
SfcI	CTRYAG	1 cut(s)	62
SfuI	TTCGAA	1 cut(s)	171
SinI	GGWCC	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
SpeI	ACTAGT	1 cut(s)	791
Sse9I	AATT	5 cut(s)	71, 104, 345, 725, 743
SspMI	CTAG	3 cut(s)	425, 792, 897
SstI	GAGCTC	1 cut(s)	783
StyD4I	CCNGG	3 cut(s)	595, 643, 766
StyI	CCWWGG	2 cut(s)	219, 424
TaaI	ACNGT	2 cut(s)	697, 991
TaqI	TCGA	3 cut(s)	44, 51, 171
TasI	AATT	5 cut(s)	71, 104, 345, 725, 743
TfiI	GAWTC	2 cut(s)	58, 161
Tru1I	TTAA	4 cut(s)	144, 393, 480, 923
Tru9I	TTAA	4 cut(s)	144, 393, 480, 923
TscAI	CASTG	1 cut(s)	996
TseFI	GTSAC	1 cut(s)	991
TseI	GCWGC	2 cut(s)	37, 127
Tsp45I	GTSAC	1 cut(s)	991
TspDTI	ATGAA	5 cut(s)	117, 207, 335, 587, 931
TspGWI	ACGGA	2 cut(s)	110, 719
TspRI	CASTG	1 cut(s)	996
VpaK11BI	GGWCC	1 cut(s)	148
XagI	CCTNNNNNAGG	1 cut(s)	857
XapI	RAATTY	1 cut(s)	345
XcmI	CCANNNNNNNNNTGG	2 cut(s)	226, 615
XmaJI	CCTAGG	1 cut(s)	424
XmnI	GAANNNNTTC	1 cut(s)	57
XspI	CTAG	3 cut(s)	425, 792, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.