Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006027

Physical Location & Seq

Genomic Coordinates Reverse (-)

43153114 .. 43154632

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50000

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAGGCGGACTCTGCTGAGGAATGTCTCTCTCTACGCTCGCAACCACCTCGTCTCCCCAAAACCTAGCCCTGCTTCTTCACTCGCCGCTTCCGCCAGGCTCTTCTCCTCCGACAAAAACGACCCGTCGTCTCCCAATGACTCGCCCCCAGAAAGCTCCAATCCCTCTCCTGAGTCGCGCCTCACCCAAGTCTTGAAGAAGGACTCCTCCATTCAACTCGAGGACATCAGTAACAAAGAACTGAAAACAAGAATGGAGGAATACTTGAAGGAAGGTAAGGAGGAGGCGCTGCCATCGATCCTCGAAGCGATTCTGCAGAGGAAATTGGCTGGGAAGCATGAGGACACGGATGATGAATTGGTGGATGATCTGCAAATGCAGCCATTGGAGAATGTTAAGGACCAAGAGTTTGAATCTGATTTCGAAGAAATCCACGACACCGATGAAGAGATTGACGACTTGTATGATGCCAAGGATGTAGTGGTGAAGAAGATGGTGAAGGATGAGTTCTTCAATATGGATGACAAAAAATGGGATGGTATTGTTCAGGATGCGATCAAGCACGGGATTATGAAGGATATGAGAGAGTGTGAGGAAATTCTTGAGGATATGCTTAGTTGGGACAAGCTCTTGCCAGATGACATTAAGAAGAAGGTAGAAGAGAAGTTCAATGACCTAGGGATAGGTGTGAAAGAGGGGAGCTTGAACCTGAAGATGCTTACAAGTTGTTTAAGGAGTTTGAGGACGAGATTGTCATGGAATATACGAAAAAGGTGGAAGCTCAGGATCCCTCACAACTTGACGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-S28

Protein Analysis

269

Amino Acids

31.14

Weight (kDa)

5.08

Isoelectric Point (pI)

63.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18240 AT3G18240 AT4G21460 AT4G21460
fragaria_vesca	FvH4_6g26830 FvH4_6g26830 FvH4_6g26830 FvH4_6g26830
malus_domestica	MD06G1220500.v1.1 MD14G1229900.v1.1
prunus_persica	Prupe.5G224900_v2.0.a1
pyrus_communis	pycom06g19650 pycom14g19140
rosa_chinensis	RchiOBHm_Chr2g0128191 RchiOBHm_Chr2g0128201
rosa_laevigata	RLG00000018997
rosa_multiflora	Rmu_co8493575.1_g000001 Rmu_sc0000837.1_g000010 Rmu_sc0003465.1_g000002
rosa_roxburghii	Rroxscaffold_2G00115500 Rroxscaffold_2G00115960
rosa_rugosa	Rorug02G0278300
rosa_samantha	Rh2AG331200 Rh2BG339400 Rh2CG316900 Rh2DG356300
rosa_wichuraiana	Rw2G026790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	751
AccII	CGCG	1 cut(s)	178
AciI	CCGC	3 cut(s)	7, 87, 93
AclWI	GGATC	3 cut(s)	292, 781, 794
AcsI	RAATTY	1 cut(s)	597
AcuI	CTGAAG	1 cut(s)	731
AgsI	TTSAA	7 cut(s)	196, 215, 268, 413, 514, 670, 706
AhdI	GACNNNNNGTC	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	4 cut(s)	156, 628, 702, 781
AluI	AGCT	4 cut(s)	156, 628, 702, 781
Alw26I	GTCTC	3 cut(s)	31, 58, 135
AlwI	GGATC	3 cut(s)	292, 781, 794
Ama87I	CYCGRG	1 cut(s)	218
ApeKI	GCWGC	2 cut(s)	289, 379
ApoI	RAATTY	1 cut(s)	597
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
Asp700I	GAANNNNTTC	1 cut(s)	309
AspA2I	CCTAGG	1 cut(s)	676
AspLEI	GCGC	2 cut(s)	180, 289
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	3 cut(s)	175, 496, 508
AsuII	TTCGAA	1 cut(s)	423
AvaI	CYCGRG	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	400
AvrII	CCTAGG	1 cut(s)	676
BamHI	GGATCC	1 cut(s)	786
BbvCI	CCTCAGC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	276, 391
BccI	CCATC	3 cut(s)	301, 487, 530
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	1 cut(s)	97
BcoDI	GTCTC	3 cut(s)	31, 58, 135
BfaI	CTAG	2 cut(s)	66, 677
BfmI	CTRYAG	1 cut(s)	314
BfoI	RGCGCY	1 cut(s)	290
BisI	GCNGC	3 cut(s)	87, 290, 380
BlnI	CCTAGG	1 cut(s)	676
BlsI	GCNGC	3 cut(s)	88, 291, 381
Bme1390I	CCNGG	1 cut(s)	97
Bme18I	GGWCC	1 cut(s)	400
BmeRI	GACNNNNNGTC	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	1 cut(s)	788
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	3 cut(s)	457, 541, 705
BplI	GAGNNNNNCTC	1 cut(s)	27
Bpu10I	CCTNAGC	2 cut(s)	17, 782
Bpu14I	TTCGAA	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	623
Bsa29I	ATCGAT	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	471, 676
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
BseBI	CCWGG	1 cut(s)	97
BseCI	ATCGAT	1 cut(s)	296
BseDI	CCNNGG	2 cut(s)	471, 676
BseGI	GGATG	7 cut(s)	355, 370, 481, 508, 526, 541, 556
BseMII	CTCAG	3 cut(s)	8, 162, 796
BseRI	GAGGAG	3 cut(s)	97, 196, 296
BseXI	GCAGC	2 cut(s)	276, 391
BseYI	CCCAGC	1 cut(s)	329
Bsh1236I	CGCG	1 cut(s)	178
BshVI	ATCGAT	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	218
BslFI	GGGAC	1 cut(s)	635
BsmAI	GTCTC	3 cut(s)	31, 58, 135
BsmBI	CGTCTC	2 cut(s)	58, 135
BsmFI	GGGAC	1 cut(s)	635
BsoBI	CYCGRG	1 cut(s)	218
Bsp119I	TTCGAA	1 cut(s)	423
Bsp143I	GATC	4 cut(s)	297, 367, 555, 786
BspACI	CCGC	3 cut(s)	7, 87, 93
BspCNI	CTCAG	3 cut(s)	9, 163, 795
BspDI	ATCGAT	1 cut(s)	296
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	788
BspMAI	CTGCAG	1 cut(s)	318
BspPI	GGATC	3 cut(s)	292, 781, 794
BspQI	GCTCTTC	1 cut(s)	107
BspT104I	TTCGAA	1 cut(s)	423
BssECI	CCNNGG	2 cut(s)	471, 676
BssMI	GATC	4 cut(s)	297, 367, 555, 786
BssT1I	CCWWGG	2 cut(s)	471, 676
Bst2UI	CCWGG	1 cut(s)	97
Bst6I	CTCTTC	3 cut(s)	107, 441, 654
BstBI	TTCGAA	1 cut(s)	423
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	4 cut(s)	17, 171, 614, 782
BstF5I	GGATG	7 cut(s)	355, 370, 481, 508, 526, 541, 556
BstFNI	CGCG	1 cut(s)	178
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	2 cut(s)	180, 289
BstKTI	GATC	4 cut(s)	300, 370, 558, 789
BstMAI	GTCTC	3 cut(s)	31, 58, 135
BstMBI	GATC	4 cut(s)	297, 367, 555, 786
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 92, 379
BstNI	CCWGG	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	95
BstSFI	CTRYAG	1 cut(s)	314
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	2 cut(s)	276, 391
BstX2I	RGATCY	1 cut(s)	786
BstYI	RGATCY	1 cut(s)	786
Bsu15I	ATCGAT	1 cut(s)	296
BsuTUI	ATCGAT	1 cut(s)	296
BtsCI	GGATG	7 cut(s)	355, 370, 481, 508, 526, 541, 556
Cac8I	GCNNGC	1 cut(s)	40
CfoI	GCGC	2 cut(s)	180, 289
Cfr13I	GGNCC	1 cut(s)	400
ClaI	ATCGAT	1 cut(s)	296
CviAII	CATG	2 cut(s)	338, 756
CviJI	RGCY	8 cut(s)	69, 100, 156, 329, 382, 628, 702, 781
CviKI_1	RGCY	8 cut(s)	69, 100, 156, 329, 382, 628, 702, 781
DdeI	CTNAG	4 cut(s)	17, 171, 614, 782
DpnI	GATC	4 cut(s)	299, 369, 557, 788
DpnII	GATC	4 cut(s)	297, 367, 555, 786
DrdI	GACNNNNNNGTC	1 cut(s)	751
DriI	GACNNNNNGTC	1 cut(s)	127
DseDI	GACNNNNNNGTC	1 cut(s)	751
Eam1104I	CTCTTC	3 cut(s)	107, 441, 654
Eam1105I	GACNNNNNGTC	1 cut(s)	127
EarI	CTCTTC	3 cut(s)	107, 441, 654
EciI	GGCGGA	2 cut(s)	22, 82
Eco130I	CCWWGG	2 cut(s)	471, 676
Eco47I	GGWCC	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	731
Eco88I	CYCGRG	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	2 cut(s)	471, 676
ErhI	CCWWGG	2 cut(s)	471, 676
Esp3I	CGTCTC	2 cut(s)	58, 135
FaeI	CATG	2 cut(s)	341, 759
FaiI	YATR	8 cut(s)	339, 465, 518, 572, 581, 611, 757, 764
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	2 cut(s)	337, 755
Fnu4HI	GCNGC	3 cut(s)	87, 290, 380
FokI	GGATG	7 cut(s)	362, 377, 488, 515, 533, 548, 563
Fsp4HI	GCNGC	3 cut(s)	87, 290, 380
FspBI	CTAG	2 cut(s)	66, 677
GlaI	GCGC	2 cut(s)	179, 288
GluI	GCNGC	3 cut(s)	87, 290, 380
GsaI	CCCAGC	1 cut(s)	333
HaeII	RGCGCY	1 cut(s)	290
HhaI	GCGC	2 cut(s)	180, 289
Hin1II	CATG	2 cut(s)	341, 759
Hin6I	GCGC	2 cut(s)	178, 287
HinP1I	GCGC	2 cut(s)	178, 287
HinfI	GANTC	6 cut(s)	10, 140, 173, 203, 310, 413
HphI	GGTGA	3 cut(s)	175, 496, 508
Hpy188I	TCNGA	2 cut(s)	112, 418
Hpy188III	TCNNGA	5 cut(s)	170, 193, 548, 602, 784
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	6 cut(s)	193, 262, 266, 493, 568, 646
HpyCH4V	TGCA	3 cut(s)	316, 373, 379
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 92, 379
HpyF3I	CTNAG	4 cut(s)	17, 171, 614, 782
Hsp92II	CATG	2 cut(s)	341, 759
HspAI	GCGC	2 cut(s)	178, 287
Kzo9I	GATC	4 cut(s)	297, 367, 555, 786
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	2 cut(s)	161, 699
Lsp1109I	GCAGC	2 cut(s)	276, 391
LweI	GCATC	3 cut(s)	457, 541, 705
MaeI	CTAG	2 cut(s)	66, 677
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	4 cut(s)	299, 369, 557, 788
MboI	GATC	4 cut(s)	297, 367, 555, 786
MflI	RGATCY	1 cut(s)	786
MluCI	AATT	3 cut(s)	323, 356, 597
MlyI	GAGTC	4 cut(s)	4, 134, 182, 197
MmeI	TCCRAC	1 cut(s)	135
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	3 cut(s)	396, 645, 731
MspR9I	CCNGG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	97
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	3 cut(s)	13, 92, 379
NdeII	GATC	4 cut(s)	297, 367, 555, 786
NlaIII	CATG	2 cut(s)	341, 759
NlaIV	GGNNCC	1 cut(s)	788
NspV	TTCGAA	1 cut(s)	423
PaeR7I	CTCGAG	1 cut(s)	218
PciSI	GCTCTTC	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	310, 413
PkrI	GCNGC	3 cut(s)	88, 291, 381
PleI	GAGTC	4 cut(s)	4, 134, 181, 197
PpsI	GAGTC	4 cut(s)	4, 134, 181, 197
Psp6I	CCWGG	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	788
PspPI	GGNCC	1 cut(s)	400
PspXI	VCTCGAGB	1 cut(s)	218
PstI	CTGCAG	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	786
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	3 cut(s)	396, 645, 731
SatI	GCNGC	3 cut(s)	87, 290, 380
Sau3AI	GATC	4 cut(s)	297, 367, 555, 786
Sau96I	GGNCC	1 cut(s)	400
SchI	GAGTC	4 cut(s)	4, 134, 182, 197
ScrFI	CCNGG	1 cut(s)	97
SfaNI	GCATC	3 cut(s)	457, 541, 705
SfcI	CTRYAG	1 cut(s)	314
Sfr274I	CTCGAG	1 cut(s)	218
SfuI	TTCGAA	1 cut(s)	423
SinI	GGWCC	1 cut(s)	400
SlaI	CTCGAG	1 cut(s)	218
SmlI	CTYRAG	2 cut(s)	218, 602
SmoI	CTYRAG	2 cut(s)	218, 602
Sse9I	AATT	3 cut(s)	323, 356, 597
SsiI	CCGC	3 cut(s)	7, 87, 93
SspMI	CTAG	2 cut(s)	66, 677
StyD4I	CCNGG	1 cut(s)	95
StyI	CCWWGG	2 cut(s)	471, 676
TaqI	TCGA	4 cut(s)	219, 296, 303, 423
TasI	AATT	3 cut(s)	323, 356, 597
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	2 cut(s)	310, 413
Tru1I	TTAA	3 cut(s)	396, 645, 731
Tru9I	TTAA	3 cut(s)	396, 645, 731
TseI	GCWGC	2 cut(s)	289, 379
TspDTI	ATGAA	3 cut(s)	369, 459, 587
TspGWI	ACGGA	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	400
XapI	RAATTY	1 cut(s)	597
XcmI	CCANNNNNNNNNTGG	1 cut(s)	478
XhoI	CTCGAG	1 cut(s)	218
XmaJI	CCTAGG	1 cut(s)	676
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	2 cut(s)	66, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.