Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006027

Physical Location & Seq

Genomic Coordinates Reverse (-)

22991461 .. 22993547

Gene Structure 2087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g19650.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGAGACGAACTTTGCTGAGCAATCTCTCTCTCTACACTCGCAATCGCCTTCTCTCTTCTCAAACATTCAACCCAAATCCAACCCCCTCACTCGTCCCACTCGCCCGTTCGACTCAGCCCCTGCTCAGCCGGTTCTTCTCCTCGGAGGGCGACTCCTCCGCCGAAAGCCCCAATCCGGCTGCTGATTCGAGCTTGGTCCCAACCAAAAAGAAAGATGCTTCCGTCGAAGTCAAGGACGTCAATAACAAAGAGCTGAAGGAGCGGATAGATAAATATTTTAAGGGTGATGAGGAGGCGCTTCCGGCCATACTCGAAGCGATTCTGCAGAGGAGATTGGCTGGGAAGCATGAGGAAACGGATGATGAGCTGATAGATGAATTGCAAAAGCAGCCGTTAGATGATGTTAAGGACCAAGAGTTTGAATCGGATTTTGAGGAATTGCACGACACGGATGAAGAGATTGATGACTTGTATAACGCAAAGGATATAGTCATGAAGAGGATGTCAAACGATGAGTACTTCAACATGGATCCCAAGAAGTGGGATGATATTGTTGAGGATGCAATTAAGCACGGGATTATGAAAAATACGAAGGAGTGTGAAGAGATTCTCGAGGATATGCTTAGCTGGGATAAGCTCCTACCAGATGACATGAAAAGGAAGGTAGAAGAGAAGTTCAATGACTTAGGGGATAAGTGTGAAAGAGGGGAGCTTCAACCTGAAGAAGCTTATGAGTTGTTCAAGGAGTTTGAGGATGAGATTTTCATGGACTATTTGCAGAAGATGGAAGCCGATGGCCCCCCACAATTTGATGAGGCTGATGTGTCTGACAAGAAGGATCTAGCTGACCCACCAGGCGAAGGGCCAATCCTTAGGTGGCAAACACGGGTAGTCTTTGCTCCTGGTGGTGATTCCTGGCATCCCAAGAATAGAAAAGTGAAACTGTCTGTTACAGTGAAAGAACTCGGGCTTTCAAAGCATCAATTCCGTCGGCTCAGAGACTTGGTTGGAAAGCGGTACCATCCAGGGAAAGATGAGCTTACAATTACTAGTGAGAGGTTTGAACACCGAGAAGAAAATAGAAAGGACTGCCTCAGGACACTTCTTTCCCTCATTGAGGAAGCTGGGAAAGCAAACAAACTGGCTGAGGATGCTCGAGTTTCGTATGTCAAGGAGAGATTAAGAGCAAATCCTGCATTCATGGAGAGGCTGCAGAACAAGACCATGAGATTGCAAGGAAAGAGTGCATTACCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-S28

Protein Analysis

420

Amino Acids

48.48

Weight (kDa)

4.97

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18240 AT3G18240 AT4G21460 AT4G21460
fragaria_vesca	FvH4_6g26830 FvH4_6g26830 FvH4_6g26830 FvH4_6g26830
malus_domestica	MD06G1220500.v1.1 MD14G1229900.v1.1
prunus_persica	Prupe.5G224900_v2.0.a1
pyrus_communis	pycom06g19650 pycom14g19140
rosa_chinensis	RchiOBHm_Chr2g0128191 RchiOBHm_Chr2g0128201
rosa_laevigata	RLG00000018997
rosa_multiflora	Rmu_co8493575.1_g000001 Rmu_sc0000837.1_g000010 Rmu_sc0003465.1_g000002
rosa_roxburghii	Rroxscaffold_2G00115500 Rroxscaffold_2G00115960
rosa_rugosa	Rorug02G0278300
rosa_samantha	Rh2AG331200 Rh2BG339400 Rh2CG316900 Rh2DG356300
rosa_wichuraiana	Rw2G026790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	240
Acc65I	GGTACC	1 cut(s)	1017
AccB1I	GGYRCC	1 cut(s)	1017
AccB7I	CCANNNNNTGG	1 cut(s)	540
AccBSI	CCGCTC	1 cut(s)	262
AciI	CCGC	3 cut(s)	159, 262, 1015
AclWI	GGATC	3 cut(s)	524, 537, 846
AcoI	YGGCCR	1 cut(s)	303
AcuI	CTGAAG	2 cut(s)	275, 741
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	2 cut(s)	518, 1019
AfiI	CCNNNNNNNGG	4 cut(s)	175, 540, 860, 1117
AgsI	TTSAA	8 cut(s)	70, 422, 523, 679, 716, 742, 975, 1064
AhlI	ACTAGT	1 cut(s)	1049
AjnI	CCWGG	4 cut(s)	853, 901, 914, 1024
Alw26I	GTCTC	1 cut(s)	993
AlwI	GGATC	3 cut(s)	524, 537, 846
AlwNI	CAGNNNCTG	1 cut(s)	121
Ama87I	CYCGRG	3 cut(s)	611, 965, 1155
AoxI	GGCC	3 cut(s)	303, 796, 863
ApeKI	GCWGC	3 cut(s)	179, 388, 1210
ArsI	GACNNNNNNTTYG	2 cut(s)	401, 433
Asp700I	GAANNNNTTC	2 cut(s)	318, 606
Asp718I	GGTACC	1 cut(s)	1017
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	4 cut(s)	196, 409, 797, 863
AsuHPI	GGTGA	2 cut(s)	296, 920
AvaI	CYCGRG	3 cut(s)	611, 965, 1155
AvaII	GGWCC	2 cut(s)	196, 409
AxyI	CCTNAGG	2 cut(s)	872, 1094
BamHI	GGATCC	1 cut(s)	529
BanI	GGYRCC	1 cut(s)	1017
BbvCI	CCTCAGC	1 cut(s)	1146
BbvI	GCAGC	3 cut(s)	166, 400, 1197
BccI	CCATC	3 cut(s)	778, 788, 1029
BceAI	ACGGC	1 cut(s)	376
BciT130I	CCWGG	4 cut(s)	855, 903, 916, 1026
BcoDI	GTCTC	1 cut(s)	993
BcuI	ACTAGT	1 cut(s)	1049
BfaI	CTAG	2 cut(s)	842, 1050
BfmI	CTRYAG	2 cut(s)	323, 1211
BfoI	RGCGCY	1 cut(s)	299
BisI	GCNGC	3 cut(s)	180, 389, 1211
BlpI	GCTNAGC	3 cut(s)	17, 125, 623
BlsI	GCNGC	3 cut(s)	181, 390, 1212
BmcAI	AGTACT	1 cut(s)	518
Bme1390I	CCNGG	4 cut(s)	855, 903, 916, 1026
Bme18I	GGWCC	2 cut(s)	196, 409
BmeT110I	CYCGRG	3 cut(s)	611, 965, 1155
BmgT120I	GGNCC	4 cut(s)	196, 409, 797, 863
BmiI	GGNNCC	4 cut(s)	198, 531, 799, 1019
BmrFI	CCNGG	4 cut(s)	855, 903, 916, 1026
BmsI	GCATC	5 cut(s)	205, 550, 928, 988, 1141
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
Bpu10I	CCTNAGC	1 cut(s)	1146
Bpu1102I	GCTNAGC	3 cut(s)	17, 125, 623
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	141, 1025
Bsc4I	CCNNNNNNNGG	4 cut(s)	175, 540, 860, 1117
Bse118I	RCCGGY	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	1146
Bse21I	CCTNAGG	2 cut(s)	872, 1094
BseBI	CCWGG	4 cut(s)	855, 903, 916, 1026
BseDI	CCNNGG	2 cut(s)	141, 1025
BseGI	GGATG	9 cut(s)	364, 457, 507, 550, 565, 760, 919, 1021, 1156
BseLI	CCNNNNNNNGG	4 cut(s)	175, 540, 860, 1117
BseMII	CTCAG	6 cut(s)	8, 128, 139, 1009, 1108, 1137
BseNI	ACTGG	1 cut(s)	1146
BseRI	GAGGAG	4 cut(s)	130, 145, 305, 343
BseXI	GCAGC	3 cut(s)	166, 400, 1197
BseYI	CCCAGC	3 cut(s)	338, 627, 1124
BshFI	GGCC	3 cut(s)	305, 798, 865
BshNI	GGYRCC	1 cut(s)	1017
BsiHKCI	CYCGRG	3 cut(s)	611, 965, 1155
BsiSI	CCGG	3 cut(s)	130, 176, 302
BslFI	GGGAC	2 cut(s)	80, 182
BslI	CCNNNNNNNGG	4 cut(s)	175, 540, 860, 1117
BsmAI	GTCTC	1 cut(s)	993
BsmFI	GGGAC	2 cut(s)	80, 182
BsmI	GAATGC	1 cut(s)	1196
BsnI	GGCC	3 cut(s)	305, 798, 865
BsoBI	CYCGRG	3 cut(s)	611, 965, 1155
Bsp143I	GATC	2 cut(s)	529, 838
Bsp1720I	GCTNAGC	3 cut(s)	17, 125, 623
BspACI	CCGC	3 cut(s)	159, 262, 1015
BspANI	GGCC	3 cut(s)	305, 798, 865
BspCNI	CTCAG	6 cut(s)	9, 127, 138, 1008, 1107, 1138
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	4 cut(s)	198, 531, 799, 1019
BspMAI	CTGCAG	2 cut(s)	327, 1215
BspPI	GGATC	3 cut(s)	524, 537, 846
BspT107I	GGYRCC	1 cut(s)	1017
BsrBI	CCGCTC	1 cut(s)	262
BsrFI	RCCGGY	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	1146
BssAI	RCCGGY	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	141, 1025
BssMI	GATC	2 cut(s)	529, 838
BssNI	GRCGYC	1 cut(s)	237
Bst2UI	CCWGG	4 cut(s)	855, 903, 916, 1026
Bst4CI	ACNGT	2 cut(s)	945, 955
Bst6I	CTCTTC	5 cut(s)	61, 450, 491, 597, 663
BstACI	GRCGYC	1 cut(s)	237
BstAPI	GCANNNNNTGC	2 cut(s)	1193, 1253
BstDEI	CTNAG	9 cut(s)	17, 114, 125, 623, 685, 872, 995, 1094, 1146
BstENI	CCTNNNNNAGG	1 cut(s)	1115
BstF5I	GGATG	9 cut(s)	364, 457, 507, 550, 565, 760, 919, 1021, 1156
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	2 cut(s)	532, 841
BstMAI	GTCTC	1 cut(s)	993
BstMBI	GATC	2 cut(s)	529, 838
BstMWI	GCNNNNNNNGC	8 cut(s)	259, 302, 388, 976, 1130, 1151, 1193, 1253
BstNI	CCWGG	4 cut(s)	855, 903, 916, 1026
BstSCI	CCNGG	4 cut(s)	853, 901, 914, 1024
BstSFI	CTRYAG	2 cut(s)	323, 1211
BstV1I	GCAGC	3 cut(s)	166, 400, 1197
BstX2I	RGATCY	2 cut(s)	529, 838
BstYI	RGATCY	2 cut(s)	529, 838
Bsu36I	CCTNAGG	2 cut(s)	872, 1094
BsuRI	GGCC	3 cut(s)	305, 798, 865
BtsCI	GGATG	9 cut(s)	364, 457, 507, 550, 565, 760, 919, 1021, 1156
BtsIMutI	CAGTG	1 cut(s)	960
CaiI	CAGNNNCTG	1 cut(s)	121
CciI	TCATGA	1 cut(s)	492
CfoI	GCGC	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	129
Cfr13I	GGNCC	4 cut(s)	196, 409, 797, 863
Csp6I	GTAC	2 cut(s)	517, 1018
CviAII	CATG	7 cut(s)	347, 493, 526, 652, 766, 1201, 1225
CviQI	GTAC	2 cut(s)	517, 1018
DdeI	CTNAG	9 cut(s)	17, 114, 125, 623, 685, 872, 995, 1094, 1146
DpnI	GATC	2 cut(s)	531, 840
DpnII	GATC	2 cut(s)	529, 838
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	5 cut(s)	61, 450, 491, 597, 663
EarI	CTCTTC	5 cut(s)	61, 450, 491, 597, 663
EciI	GGCGGA	1 cut(s)	148
Eco47I	GGWCC	2 cut(s)	196, 409
Eco57I	CTGAAG	2 cut(s)	275, 741
Eco81I	CCTNAGG	2 cut(s)	872, 1094
Eco88I	CYCGRG	3 cut(s)	611, 965, 1155
EcoNI	CCTNNNNNAGG	1 cut(s)	1115
EcoRII	CCWGG	4 cut(s)	853, 901, 914, 1024
FaeI	CATG	7 cut(s)	350, 496, 529, 655, 769, 1204, 1228
FalI	AAGNNNNNCTT	2 cut(s)	1023, 1055
FaqI	GGGAC	2 cut(s)	80, 182
FatI	CATG	7 cut(s)	346, 492, 525, 651, 765, 1200, 1224
Fnu4HI	GCNGC	3 cut(s)	180, 389, 1211
FokI	GGATG	9 cut(s)	371, 464, 514, 557, 572, 767, 906, 1008, 1163
Fsp4HI	GCNGC	3 cut(s)	180, 389, 1211
FspBI	CTAG	2 cut(s)	842, 1050
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	3 cut(s)	180, 389, 1211
GsaI	CCCAGC	3 cut(s)	342, 631, 1128
HaeII	RGCGCY	1 cut(s)	299
HaeIII	GGCC	3 cut(s)	305, 798, 865
HapII	CCGG	3 cut(s)	130, 176, 302
HhaI	GCGC	1 cut(s)	298
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	7 cut(s)	350, 496, 529, 655, 769, 1204, 1228
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HindIII	AAGCTT	1 cut(s)	726
HinfI	GANTC	7 cut(s)	112, 152, 185, 319, 422, 607, 911
HpaII	CCGG	3 cut(s)	130, 176, 302
HphI	GGTGA	2 cut(s)	296, 920
Hpy188I	TCNGA	4 cut(s)	145, 427, 829, 998
Hpy188III	TCNNGA	3 cut(s)	493, 611, 1096
Hpy99I	CGWCG	2 cut(s)	227, 993
HpyAV	CCTTC	6 cut(s)	59, 250, 586, 655, 829, 854
HpyCH4III	ACNGT	2 cut(s)	945, 955
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	9 cut(s)	325, 382, 442, 563, 778, 1196, 1213, 1234, 1247
HpyF10VI	GCNNNNNNNGC	8 cut(s)	259, 302, 388, 976, 1130, 1151, 1193, 1253
HpyF3I	CTNAG	9 cut(s)	17, 114, 125, 623, 685, 872, 995, 1094, 1146
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	7 cut(s)	350, 496, 529, 655, 769, 1204, 1228
HspAI	GCGC	1 cut(s)	296
KpnI	GGTACC	1 cut(s)	1021
Kzo9I	GATC	2 cut(s)	529, 838
LmnI	GCTCC	4 cut(s)	259, 642, 709, 904
Lsp1109I	GCAGC	3 cut(s)	166, 400, 1197
LweI	GCATC	5 cut(s)	205, 550, 928, 988, 1141
MaeI	CTAG	2 cut(s)	842, 1050
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	949
MalI	GATC	2 cut(s)	531, 840
MbiI	CCGCTC	1 cut(s)	262
MboI	GATC	2 cut(s)	529, 838
MboII	GAAGA	9 cut(s)	48, 127, 467, 508, 614, 680, 734, 793, 1085
MflI	RGATCY	2 cut(s)	529, 838
MluCI	AATT	6 cut(s)	377, 437, 564, 806, 983, 1044
MlyI	GAGTC	2 cut(s)	106, 146
MmeI	TCCRAC	2 cut(s)	104, 988
MroXI	GAANNNNTTC	2 cut(s)	318, 606
MseI	TTAA	4 cut(s)	279, 405, 567, 1181
MspI	CCGG	3 cut(s)	130, 176, 302
MspR9I	CCNGG	4 cut(s)	855, 903, 916, 1026
Mva1269I	GAATGC	1 cut(s)	1196
MvaI	CCWGG	4 cut(s)	855, 903, 916, 1026
MwoI	GCNNNNNNNGC	8 cut(s)	259, 302, 388, 976, 1130, 1151, 1193, 1253
NdeII	GATC	2 cut(s)	529, 838
NlaIII	CATG	7 cut(s)	350, 496, 529, 655, 769, 1204, 1228
NlaIV	GGNNCC	4 cut(s)	198, 531, 799, 1019
PaeR7I	CTCGAG	2 cut(s)	611, 1155
PagI	TCATGA	1 cut(s)	492
PctI	GAATGC	1 cut(s)	1196
PdmI	GAANNNNTTC	2 cut(s)	318, 606
PfeI	GAWTC	5 cut(s)	185, 319, 422, 607, 911
PflMI	CCANNNNNTGG	1 cut(s)	540
PkrI	GCNGC	3 cut(s)	181, 390, 1212
PleI	GAGTC	2 cut(s)	106, 146
PpsI	GAGTC	2 cut(s)	106, 146
Psp6I	CCWGG	4 cut(s)	853, 901, 914, 1024
PspFI	CCCAGC	3 cut(s)	338, 627, 1124
PspGI	CCWGG	4 cut(s)	853, 901, 914, 1024
PspN4I	GGNNCC	4 cut(s)	198, 531, 799, 1019
PspPI	GGNCC	4 cut(s)	196, 409, 797, 863
PspXI	VCTCGAGB	1 cut(s)	1155
PstI	CTGCAG	2 cut(s)	327, 1215
PstNI	CAGNNNCTG	1 cut(s)	121
PsuI	RGATCY	2 cut(s)	529, 838
RsaI	GTAC	2 cut(s)	518, 1019
RsaNI	GTAC	2 cut(s)	517, 1018
SaqAI	TTAA	4 cut(s)	279, 405, 567, 1181
SatI	GCNGC	3 cut(s)	180, 389, 1211
Sau3AI	GATC	2 cut(s)	529, 838
Sau96I	GGNCC	4 cut(s)	196, 409, 797, 863
ScaI	AGTACT	1 cut(s)	518
SchI	GAGTC	2 cut(s)	106, 146
ScrFI	CCNGG	4 cut(s)	855, 903, 916, 1026
SfaNI	GCATC	5 cut(s)	205, 550, 928, 988, 1141
SfcI	CTRYAG	2 cut(s)	323, 1211
Sfr274I	CTCGAG	2 cut(s)	611, 1155
SinI	GGWCC	2 cut(s)	196, 409
SlaI	CTCGAG	2 cut(s)	611, 1155
SmlI	CTYRAG	2 cut(s)	611, 1155
SmoI	CTYRAG	2 cut(s)	611, 1155
SpeI	ACTAGT	1 cut(s)	1049
Sse9I	AATT	6 cut(s)	377, 437, 564, 806, 983, 1044
SsiI	CCGC	3 cut(s)	159, 262, 1015
SspI	AATATT	1 cut(s)	275
SspMI	CTAG	2 cut(s)	842, 1050
StyD4I	CCNGG	4 cut(s)	853, 901, 914, 1024
TaaI	ACNGT	2 cut(s)	945, 955
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	6 cut(s)	110, 188, 225, 312, 612, 1156
TasI	AATT	6 cut(s)	377, 437, 564, 806, 983, 1044
TatI	WGTACW	1 cut(s)	516
TfiI	GAWTC	5 cut(s)	185, 319, 422, 607, 911
Tru1I	TTAA	4 cut(s)	279, 405, 567, 1181
Tru9I	TTAA	4 cut(s)	279, 405, 567, 1181
TscAI	CASTG	1 cut(s)	960
TseI	GCWGC	3 cut(s)	179, 388, 1210
TspDTI	ATGAA	7 cut(s)	390, 468, 509, 596, 668, 754, 1189
TspGWI	ACGGA	4 cut(s)	211, 371, 464, 977
TspRI	CASTG	1 cut(s)	960
Van91I	CCANNNNNTGG	1 cut(s)	540
VpaK11BI	GGWCC	2 cut(s)	196, 409
XagI	CCTNNNNNAGG	1 cut(s)	1115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	873
XhoI	CTCGAG	2 cut(s)	611, 1155
XmnI	GAANNNNTTC	2 cut(s)	318, 606
XspI	CTAG	2 cut(s)	842, 1050
ZraI	GACGTC	1 cut(s)	238
ZrmI	AGTACT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.