Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016369

Physical Location & Seq

Genomic Coordinates Forward (+)

23209330 .. 23212787

Gene Structure 3458 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGATGAGCTACAGAGATAAACTCGAACGCAGTGTCTCTCTCATCCCTGCAGCCGCTGCTCTCGGTGCGGAGGATCGTGCTGCTCTTGTTAAAGCTCTGGAGAGCTTGGTTGGACAGCATTCTGCCAAATTGGAATCACCCGAGCTGAAGAAGCGCCTTGCAGCTTTGACTGAAATACAGGGCCAACTCAAGGACCTGAAAATAAAATTTGTTGAGGAGAGAGCTGCACTGAAAGCTAGACAGAATCGTTGCCGGGAAGAAGGACACAACTTTAGGCTTTATACACTGATGAATAATGAAGTGCTTGCTCAGGAGATCACAGACCAAGATGAAGAGGCTCTCAAGTATCTCCAAGATATTAAGTGCTCTAGGATAGGCAACTCTAGGGGATTCAAGATGGAGTTTTTCTTTTATTCTAATCCCTGTTTTGAAAATTCTGTGTTGATGAAAACATACCACATGAATAATGACAATACGCCTATTCTTCTGTGCTATTCTTATTTATTTCACTTCTTTTTTTTATTTTTTCCTCAATTTGGGTTAACTTGCAGGACCGAGATCAAGTGGTATCCGGGGAAAAACTTGACTGACAACCTTCACAGCTTCTTCAACTTCTTTCAACCTGTCCAGGCGGCAGATGTCCAAAGTAGGATCCACTGTGATTATGACATTTTTTCAACAATTCGAGATGAAATTATCCCTCAGTTTCCCCAAGTGATGAAGCGGAACAATAAGGGACTAATTGGTTTTACTTCGAGGGAGCCAGTACTGAAAAACATATTTTTAGGGGAGAGGGCTGTGTTGGAAGGAAAATATCAGAAGCTGTACGAACCTCTTTACAAAAAGAGATATGAGATTGTTAATGGCACAACTGGAACTGCAGTAGACCAAGAAGGAGATAAAGCCCGAGAAGAGAAAGGAGTGCCTTGCTTTTGGGCTATTGCAATGAAGAACGATGAAGTACTTGCTCAGAAGATTACGAAGTGTGATGAGGAAGCTCTCAAATATCTCAAAGATATCAAGTGGTCTAGGATAAACAATTCTTTGGGGTTCAAGCTGGAGTTCTTCTTTGATCCAAATCCATATTTTGAAAACACTGTCCTAACCAAAGCATATCATATGACTAGTGACAGTCAACCTGCAGTGTTGGAGAAGACAATTGGGACAAAAATCAATTGGCTTCCTGGCAAGAGCTTGACAGCTAGTCTTCTGAAGAGGCCAAGAAAGCGATCAAAGACTGCTGAGTTCATGACCAAACATCAAAGTTTTTTCAACTTCTTTAACACTCCCAAGTATCCTGAGCTCAACTTATATGCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

441

Amino Acids

51.1

Weight (kDa)

8.98

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	90 - 198	2.8e-19	Nucleosome assembly protein (NAP)
NAP	PF00956	257 - 434	1.2e-50	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016369)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30051 FvH4_6g30060 FvH4_6g30063
rosa_chinensis	RchiOBHm_Chr2g0136101
rosa_laevigata	RLG00000019503
rosa_multiflora	Rmu_sc0002070.1_g000009 Rmu_sc0002986.1_g000017
rosa_roxburghii	Rroxscaffold_2G00108490
rosa_rugosa	Rorug02G0328000 Rorug02G0328100
rosa_samantha	Rh2AG379800 Rh2BG386600 Rh2CG365800 Rh2DG402700
rosa_wichuraiana	Rw2G030960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1147
AccI	GTMKAC	1 cut(s)	885
AciI	CCGC	4 cut(s)	54, 68, 632, 724
AclWI	GGATC	4 cut(s)	81, 646, 659, 1067
AcsI	RAATTY	2 cut(s)	206, 433
AcuI	CTGAAG	2 cut(s)	167, 1232
AfaI	GTAC	3 cut(s)	768, 827, 963
AfiI	CCNNNNNNNGG	2 cut(s)	190, 536
AgsI	TTSAA	8 cut(s)	394, 431, 610, 620, 678, 1054, 1091, 1273
AhdI	GACNNNNNGTC	1 cut(s)	1203
AhlI	ACTAGT	1 cut(s)	1124
AjnI	CCWGG	2 cut(s)	627, 1183
Alw21I	GWGCWC	2 cut(s)	368, 1305
Alw26I	GTCTC	1 cut(s)	40
AlwI	GGATC	4 cut(s)	81, 646, 659, 1067
AlwNI	CAGNNNCTG	2 cut(s)	56, 823
Ama87I	CYCGRG	2 cut(s)	140, 906
AoxI	GGCC	2 cut(s)	181, 1217
ApeKI	GCWGC	5 cut(s)	50, 56, 80, 161, 224
ApoI	RAATTY	2 cut(s)	206, 433
ArsI	GACNNNNNNTTYG	2 cut(s)	18, 50
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	3 cut(s)	181, 193, 552
AsuC2I	CCSGG	2 cut(s)	254, 573
AsuHPI	GGTGA	1 cut(s)	129
AvaI	CYCGRG	2 cut(s)	140, 906
AvaII	GGWCC	2 cut(s)	193, 552
BamHI	GGATCC	1 cut(s)	651
BanII	GRGCYC	1 cut(s)	1305
BbsI	GAAGAC	2 cut(s)	1160, 1199
Bbv12I	GWGCWC	2 cut(s)	368, 1305
BbvI	GCAGC	5 cut(s)	43, 62, 67, 173, 211
BccI	CCATC	1 cut(s)	391
BciT130I	CCWGG	2 cut(s)	629, 1185
BciVI	GTATCC	2 cut(s)	579, 1305
BcnI	CCSGG	2 cut(s)	254, 573
BcoDI	GTCTC	1 cut(s)	40
BcuI	ACTAGT	1 cut(s)	1124
BfaI	CTAG	6 cut(s)	237, 369, 384, 1029, 1125, 1203
BfmI	CTRYAG	4 cut(s)	10, 48, 879, 1140
BfoI	RGCGCY	1 cut(s)	157
BfuAI	ACCTGC	1 cut(s)	1147
BfuI	GTATCC	2 cut(s)	579, 1305
BisI	GCNGC	7 cut(s)	51, 54, 57, 81, 162, 225, 633
BlsI	GCNGC	7 cut(s)	52, 55, 58, 82, 163, 226, 634
BmcAI	AGTACT	2 cut(s)	768, 963
Bme1390I	CCNGG	4 cut(s)	254, 573, 629, 1185
Bme18I	GGWCC	2 cut(s)	193, 552
BmeRI	GACNNNNNGTC	1 cut(s)	1203
BmeT110I	CYCGRG	2 cut(s)	140, 906
BmgT120I	GGNCC	3 cut(s)	181, 193, 552
BmiI	GGNNCC	2 cut(s)	653, 762
BmrFI	CCNGG	4 cut(s)	254, 573, 629, 1185
BpiI	GAAGAC	2 cut(s)	1160, 1199
BplI	GAGNNNNNCTC	1 cut(s)	38
BpmI	CTGGAG	2 cut(s)	119, 1079
Bpu10I	CCTNAGC	2 cut(s)	309, 1299
BpuEI	CTTGAG	2 cut(s)	173, 326
BpuMI	CCSGG	2 cut(s)	254, 573
BsaBI	GATNNNNATC	1 cut(s)	1077
BsaJI	CCNNGG	1 cut(s)	572
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 536
Bse1I	ACTGG	2 cut(s)	764, 877
Bse3DI	GCAATG	1 cut(s)	951
Bse8I	GATNNNNATC	1 cut(s)	1077
BseBI	CCWGG	2 cut(s)	629, 1185
BseDI	CCNNGG	1 cut(s)	572
BseGI	GGATG	1 cut(s)	42
BseJI	GATNNNNATC	1 cut(s)	1077
BseLI	CCNNNNNNNGG	2 cut(s)	190, 536
BseMI	GCAATG	1 cut(s)	951
BseMII	CTCAG	5 cut(s)	323, 716, 983, 1233, 1290
BseNI	ACTGG	2 cut(s)	764, 877
BseRI	GAGGAG	1 cut(s)	230
BseXI	GCAGC	5 cut(s)	43, 62, 67, 173, 211
BsgI	GTGCAG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	183, 1219
BsiHKAI	GWGCWC	2 cut(s)	368, 1305
BsiHKCI	CYCGRG	2 cut(s)	140, 906
BsiSI	CCGG	2 cut(s)	253, 572
BslFI	GGGAC	2 cut(s)	750, 1177
BslI	CCNNNNNNNGG	2 cut(s)	190, 536
BsmAI	GTCTC	1 cut(s)	40
BsmFI	GGGAC	2 cut(s)	750, 1177
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	2 cut(s)	183, 1219
BsoBI	CYCGRG	2 cut(s)	140, 906
Bsp1286I	GDGCHC	2 cut(s)	368, 1305
Bsp143I	GATC	6 cut(s)	73, 315, 558, 651, 1072, 1229
BspACI	CCGC	4 cut(s)	54, 68, 632, 724
BspANI	GGCC	2 cut(s)	183, 1219
BspCNI	CTCAG	5 cut(s)	322, 715, 982, 1234, 1291
BspHI	TCATGA	2 cut(s)	1248, 1319
BspLI	GGNNCC	2 cut(s)	653, 762
BspMAI	CTGCAG	3 cut(s)	52, 883, 1144
BspMI	ACCTGC	1 cut(s)	1147
BspPI	GGATC	4 cut(s)	81, 646, 659, 1067
BsrDI	GCAATG	1 cut(s)	951
BsrI	ACTGG	2 cut(s)	764, 877
BssECI	CCNNGG	1 cut(s)	572
BssMI	GATC	6 cut(s)	73, 315, 558, 651, 1072, 1229
Bst2UI	CCWGG	2 cut(s)	629, 1185
Bst4CI	ACNGT	3 cut(s)	659, 1099, 1133
Bst6I	CTCTTC	3 cut(s)	327, 906, 1208
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	5 cut(s)	309, 702, 969, 1242, 1299
BstF5I	GGATG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	6 cut(s)	76, 318, 561, 654, 1075, 1232
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	6 cut(s)	73, 315, 558, 651, 1072, 1229
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 65, 151, 233, 1225
BstNI	CCWGG	2 cut(s)	629, 1185
BstSCI	CCNGG	4 cut(s)	252, 571, 627, 1183
BstSFI	CTRYAG	4 cut(s)	10, 48, 879, 1140
BstV1I	GCAGC	5 cut(s)	43, 62, 67, 173, 211
BstV2I	GAAGAC	2 cut(s)	1160, 1199
BstX2I	RGATCY	1 cut(s)	651
BstYI	RGATCY	1 cut(s)	651
BsuI	GTATCC	2 cut(s)	579, 1305
BsuRI	GGCC	2 cut(s)	183, 1219
BtsCI	GGATG	1 cut(s)	42
BtsI	GCAGTG	2 cut(s)	37, 1149
BtsIMutI	CAGTG	6 cut(s)	37, 227, 284, 655, 1095, 1149
BveI	ACCTGC	1 cut(s)	1147
Cac8I	GCNNGC	1 cut(s)	306
CaiI	CAGNNNCTG	2 cut(s)	56, 823
CciI	TCATGA	2 cut(s)	1248, 1319
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	3 cut(s)	181, 193, 552
Csp6I	GTAC	3 cut(s)	767, 826, 962
CviAII	CATG	3 cut(s)	460, 1249, 1320
CviQI	GTAC	3 cut(s)	767, 826, 962
DdeI	CTNAG	5 cut(s)	309, 702, 969, 1242, 1299
DpnI	GATC	6 cut(s)	75, 317, 560, 653, 1074, 1231
DpnII	GATC	6 cut(s)	73, 315, 558, 651, 1072, 1229
DriI	GACNNNNNGTC	1 cut(s)	1203
Eam1104I	CTCTTC	3 cut(s)	327, 906, 1208
Eam1105I	GACNNNNNGTC	1 cut(s)	1203
EarI	CTCTTC	3 cut(s)	327, 906, 1208
Ecl136II	GAGCTC	1 cut(s)	1303
Eco24I	GRGCYC	1 cut(s)	1305
Eco32I	GATATC	1 cut(s)	1018
Eco47I	GGWCC	2 cut(s)	193, 552
Eco53kI	GAGCTC	1 cut(s)	1303
Eco57I	CTGAAG	2 cut(s)	167, 1232
Eco88I	CYCGRG	2 cut(s)	140, 906
EcoICRI	GAGCTC	1 cut(s)	1303
EcoO109I	RGGNCCY	1 cut(s)	193
EcoRII	CCWGG	2 cut(s)	627, 1183
EcoRV	GATATC	1 cut(s)	1018
EcoT22I	ATGCAT	1 cut(s)	1318
EcoT38I	GRGCYC	1 cut(s)	1305
FaeI	CATG	3 cut(s)	463, 1252, 1323
FaqI	GGGAC	2 cut(s)	750, 1177
FatI	CATG	3 cut(s)	459, 1248, 1319
FauNDI	CATATG	1 cut(s)	1119
FblI	GTMKAC	1 cut(s)	885
Fnu4HI	GCNGC	7 cut(s)	51, 54, 57, 81, 162, 225, 633
FokI	GGATG	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	1305
Fsp4HI	GCNGC	7 cut(s)	51, 54, 57, 81, 162, 225, 633
FspBI	CTAG	6 cut(s)	237, 369, 384, 1029, 1125, 1203
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	7 cut(s)	51, 54, 57, 81, 162, 225, 633
GsuI	CTGGAG	2 cut(s)	119, 1079
HaeII	RGCGCY	1 cut(s)	157
HaeIII	GGCC	2 cut(s)	183, 1219
HapII	CCGG	2 cut(s)	253, 572
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	463, 1252, 1323
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HincII	GTYRAC	2 cut(s)	543, 1136
HindII	GTYRAC	2 cut(s)	543, 1136
HinfI	GANTC	3 cut(s)	134, 244, 390
HpaI	GTTAAC	1 cut(s)	543
HpaII	CCGG	2 cut(s)	253, 572
HphI	GGTGA	1 cut(s)	129
Hpy166II	GTNNAC	3 cut(s)	543, 886, 1136
Hpy188I	TCNGA	3 cut(s)	819, 972, 1212
Hpy188III	TCNNGA	7 cut(s)	98, 311, 394, 686, 1249, 1298, 1320
Hpy8I	GTNNAC	3 cut(s)	543, 886, 1136
HpyAV	CCTTC	4 cut(s)	254, 605, 800, 887
HpyCH4III	ACNGT	3 cut(s)	659, 1099, 1133
HpyCH4V	TGCA	8 cut(s)	50, 161, 227, 549, 881, 944, 1142, 1316
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 65, 151, 233, 1225
HpyF3I	CTNAG	5 cut(s)	309, 702, 969, 1242, 1299
Hsp92II	CATG	3 cut(s)	463, 1252, 1323
HspAI	GCGC	1 cut(s)	154
KspAI	GTTAAC	1 cut(s)	543
Kzo9I	GATC	6 cut(s)	73, 315, 558, 651, 1072, 1229
LmnI	GCTCC	1 cut(s)	760
Lsp1109I	GCAGC	5 cut(s)	43, 62, 67, 173, 211
MaeI	CTAG	6 cut(s)	237, 369, 384, 1029, 1125, 1203
MaeIII	GTNAC	1 cut(s)	1127
MalI	GATC	6 cut(s)	75, 317, 560, 653, 1074, 1231
MboI	GATC	6 cut(s)	73, 315, 558, 651, 1072, 1229
MfeI	CAATTG	2 cut(s)	1158, 1174
MflI	RGATCY	1 cut(s)	651
MhlI	GDGCHC	2 cut(s)	368, 1305
MmeI	TCCRAC	3 cut(s)	91, 783, 1128
Mph1103I	ATGCAT	1 cut(s)	1318
MseI	TTAA	5 cut(s)	90, 360, 542, 861, 1281
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	2 cut(s)	253, 572
MspR9I	CCNGG	4 cut(s)	254, 573, 629, 1185
MunI	CAATTG	2 cut(s)	1158, 1174
Mva1269I	GAATGC	1 cut(s)	118
MvaI	CCWGG	2 cut(s)	629, 1185
MwoI	GCNNNNNNNGC	5 cut(s)	56, 65, 151, 233, 1225
NciI	CCSGG	2 cut(s)	254, 573
NdeI	CATATG	1 cut(s)	1119
NdeII	GATC	6 cut(s)	73, 315, 558, 651, 1072, 1229
NlaIII	CATG	3 cut(s)	463, 1252, 1323
NlaIV	GGNNCC	2 cut(s)	653, 762
NmuCI	GTSAC	1 cut(s)	1127
NsiI	ATGCAT	1 cut(s)	1318
PagI	TCATGA	2 cut(s)	1248, 1319
PctI	GAATGC	1 cut(s)	118
PfeI	GAWTC	3 cut(s)	134, 244, 390
PkrI	GCNGC	7 cut(s)	52, 55, 58, 82, 163, 226, 634
PpuMI	RGGWCCY	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	1305
Psp5II	RGGWCCY	1 cut(s)	193
Psp6I	CCWGG	2 cut(s)	627, 1183
PspGI	CCWGG	2 cut(s)	627, 1183
PspN4I	GGNNCC	2 cut(s)	653, 762
PspPI	GGNCC	3 cut(s)	181, 193, 552
PspPPI	RGGWCCY	1 cut(s)	193
PstI	CTGCAG	3 cut(s)	52, 883, 1144
PstNI	CAGNNNCTG	2 cut(s)	56, 823
PsuI	RGATCY	1 cut(s)	651
RsaI	GTAC	3 cut(s)	768, 827, 963
RsaNI	GTAC	3 cut(s)	767, 826, 962
SacI	GAGCTC	1 cut(s)	1305
SaqAI	TTAA	5 cut(s)	90, 360, 542, 861, 1281
SatI	GCNGC	7 cut(s)	51, 54, 57, 81, 162, 225, 633
Sau3AI	GATC	6 cut(s)	73, 315, 558, 651, 1072, 1229
Sau96I	GGNCC	3 cut(s)	181, 193, 552
ScaI	AGTACT	2 cut(s)	768, 963
ScrFI	CCNGG	4 cut(s)	254, 573, 629, 1185
SduI	GDGCHC	2 cut(s)	368, 1305
SfcI	CTRYAG	4 cut(s)	10, 48, 879, 1140
SinI	GGWCC	2 cut(s)	193, 552
SmlI	CTYRAG	2 cut(s)	188, 341
SmoI	CTYRAG	2 cut(s)	188, 341
SpeI	ACTAGT	1 cut(s)	1124
SsiI	CCGC	4 cut(s)	54, 68, 632, 724
SspMI	CTAG	6 cut(s)	237, 369, 384, 1029, 1125, 1203
SstI	GAGCTC	1 cut(s)	1305
StyD4I	CCNGG	4 cut(s)	252, 571, 627, 1183
TaaI	ACNGT	3 cut(s)	659, 1099, 1133
TaqI	TCGA	3 cut(s)	24, 685, 755
TaqII	GACCGA	1 cut(s)	569
TatI	WGTACW	2 cut(s)	766, 961
TauI	GCSGC	2 cut(s)	56, 635
TfiI	GAWTC	3 cut(s)	134, 244, 390
Tru1I	TTAA	5 cut(s)	90, 360, 542, 861, 1281
Tru9I	TTAA	5 cut(s)	90, 360, 542, 861, 1281
TscAI	CASTG	6 cut(s)	37, 234, 291, 662, 1102, 1149
TseFI	GTSAC	1 cut(s)	1127
TseI	GCWGC	5 cut(s)	50, 56, 80, 161, 224
Tsp45I	GTSAC	1 cut(s)	1127
TspRI	CASTG	6 cut(s)	37, 234, 291, 662, 1102, 1149
VpaK11BI	GGWCC	2 cut(s)	193, 552
XapI	RAATTY	2 cut(s)	206, 433
XmiI	GTMKAC	1 cut(s)	885
XspI	CTAG	6 cut(s)	237, 369, 384, 1029, 1125, 1203
ZrmI	AGTACT	2 cut(s)	768, 963
Zsp2I	ATGCAT	1 cut(s)	1318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.