Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016369

Physical Location & Seq

Genomic Coordinates Reverse (-)

32493687 .. 32498289

Gene Structure 4603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00108490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGATCAACTACAGAGATAAACTCGAACGCAGTGTGTCTCTCATTCCGGCAGCCGCTGCTCTCAGTGCGGAGGATCGTGCTGCTCTTGTTAAAGCTCTGGAGACCTTGGTTGGGCAGCATTCTAACAAATTGGAATCACCCGAGCTGAAGAAGCGCATTGAGGCTTTCACAGAAATACAGGGCCAACTCAAGGACCTGGAAACAAAATTTTTTGTGGACAGGGCTGCACTGAAAGCTAAACAGAAGCGTTTCCAAGAAGAGGGGCATGACTTTAGGCTTTATACACTGAAAAATAATGAAGTGCTTGCTAAGGAGATCACAGAGCATGATGAAGAGGCTTTCAAGTATCTCAGTGATATCAACTGCTGTAGGATAGGCAGTTCTAATGGATTCAAGATGGAGTTTATCTTTTATCCCAACCCCTACTTCGAAAATTCTGTATTGAAAAAGACATACCACATGACTATTGACAATAAGCCTATATTGGAGAAGGCAATTGGGACGGAGATCAAGTGGTATCCAGGGAAAATCTTTGCTGAGAACTGTCGGAGCTTCTTCAACTTCTTTCAACCTCTCCAGGCGGCAGACGTCCAAAGTCAGATGCACCGGAGTTATGACATTTTTTCAACAATTCGAGATGAAATCATCCCCCAGTGGCACCAAGTGAATGGGAAAAAGAATTCTCGTAAGTCATGCATCTACATAAGGCATGAGGAGCCACTGAAAACAATATTTTTAAGAGAGAGAGCTGTGTTGGAAGGAAAATATCAGAAGCTTTACGAACCTCTCTACAAAAAGAGATATGAGATTGTTAATGGTATAACTGAAGCTCAAGAAACGAAAAGTGAAACTGCAGTAGACCAAGGAGGTAAAGCCAGAGAAGATAAAGGAGTGCCTTACTTTTGGGTTACTGCAATGAAGAATGATGAAGTTCTTGCTCAGAAGATTACAAAGTGTGATGATGGAGCTCTCAAATATCTCAAAAGATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

330

Amino Acids

38.49

Weight (kDa)

8.8

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	78 - 176	1e-24	Nucleosome assembly protein (NAP)
NAP	PF00956	241 - 328	8.4e-20	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016369)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30051 FvH4_6g30060 FvH4_6g30063
rosa_chinensis	RchiOBHm_Chr2g0136101
rosa_laevigata	RLG00000019503
rosa_multiflora	Rmu_sc0002070.1_g000009 Rmu_sc0002986.1_g000017
rosa_roxburghii	Rroxscaffold_2G00108490
rosa_rugosa	Rorug02G0328000 Rorug02G0328100
rosa_samantha	Rh2AG379800 Rh2BG386600 Rh2CG365800 Rh2DG402700
rosa_wichuraiana	Rw2G030960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	591
AccB1I	GGYRCC	1 cut(s)	657
AccI	GTMKAC	1 cut(s)	858
AciI	CCGC	3 cut(s)	54, 68, 581
AclWI	GGATC	1 cut(s)	81
AcsI	RAATTY	3 cut(s)	206, 433, 679
AcuI	CTGAAG	2 cut(s)	167, 846
AcyI	GRCGYC	1 cut(s)	588
AdeI	CACNNNGTG	1 cut(s)	664
AfiI	CCNNNNNNNGG	3 cut(s)	111, 190, 259
AgsI	TTSAA	6 cut(s)	343, 394, 445, 559, 569, 627
AjnI	CCWGG	3 cut(s)	195, 520, 576
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AloI	GAACNNNNNNTCC	2 cut(s)	364, 396
AluBI	AGCT	8 cut(s)	95, 145, 236, 552, 749, 775, 830, 968
AluI	AGCT	8 cut(s)	95, 145, 236, 552, 749, 775, 830, 968
Alw21I	GWGCWC	1 cut(s)	970
Alw26I	GTCTC	2 cut(s)	42, 95
AlwI	GGATC	1 cut(s)	81
AlwNI	CAGNNNCTG	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	5 cut(s)	50, 56, 80, 115, 224
ApoI	RAATTY	3 cut(s)	206, 433, 679
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	181, 193
AsuHPI	GGTGA	1 cut(s)	129
AsuII	TTCGAA	1 cut(s)	429
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	657
BanII	GRGCYC	1 cut(s)	970
Bbv12I	GWGCWC	1 cut(s)	970
BbvI	GCAGC	5 cut(s)	43, 62, 67, 127, 211
BccI	CCATC	2 cut(s)	391, 956
BciT130I	CCWGG	3 cut(s)	197, 522, 578
BciVI	GTATCC	1 cut(s)	528
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	42, 95
BfmI	CTRYAG	3 cut(s)	10, 367, 852
BfuI	GTATCC	1 cut(s)	528
BisI	GCNGC	7 cut(s)	51, 54, 57, 81, 116, 225, 582
BlsI	GCNGC	7 cut(s)	52, 55, 58, 82, 117, 226, 583
Bme1390I	CCNGG	3 cut(s)	197, 522, 578
Bme18I	GGWCC	1 cut(s)	193
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	2 cut(s)	181, 193
BmiI	GGNNCC	2 cut(s)	659, 717
BmrFI	CCNGG	3 cut(s)	197, 522, 578
BmrI	ACTGGG	1 cut(s)	646
BmsI	GCATC	2 cut(s)	591, 705
BmuI	ACTGGG	1 cut(s)	646
BplI	GAGNNNNNCTC	1 cut(s)	38
BpmI	CTGGAG	2 cut(s)	119, 560
Bpu10I	CCTNAGC	1 cut(s)	309
Bpu14I	TTCGAA	1 cut(s)	429
BpuEI	CTTGAG	2 cut(s)	173, 816
BsaHI	GRCGYC	1 cut(s)	588
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	105, 521, 862
BsaWI	WCCGGW	1 cut(s)	606
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 190, 259
Bse1I	ACTGG	1 cut(s)	652
Bse3DI	GCAATG	1 cut(s)	921
BseBI	CCWGG	3 cut(s)	197, 522, 578
BseDI	CCNNGG	3 cut(s)	105, 521, 862
BseGI	GGATG	1 cut(s)	645
BseLI	CCNNNNNNNGG	3 cut(s)	111, 190, 259
BseMI	GCAATG	1 cut(s)	921
BseMII	CTCAG	4 cut(s)	76, 364, 528, 953
BseNI	ACTGG	1 cut(s)	652
BseRI	GAGGAG	1 cut(s)	728
BseXI	GCAGC	5 cut(s)	43, 62, 67, 127, 211
BsgI	GTGCAG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	183
BshNI	GGYRCC	1 cut(s)	657
BsiHKAI	GWGCWC	1 cut(s)	970
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	2 cut(s)	47, 607
BslFI	GGGAC	1 cut(s)	514
BslI	CCNNNNNNNGG	3 cut(s)	111, 190, 259
BsmAI	GTCTC	2 cut(s)	42, 95
BsmFI	GGGAC	1 cut(s)	514
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	183
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	140
Bsp119I	TTCGAA	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	970
Bsp143I	GATC	4 cut(s)	3, 73, 315, 507
BspACI	CCGC	3 cut(s)	54, 68, 581
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	4 cut(s)	75, 363, 529, 952
BspLI	GGNNCC	2 cut(s)	659, 717
BspMAI	CTGCAG	1 cut(s)	856
BspPI	GGATC	1 cut(s)	81
BspT104I	TTCGAA	1 cut(s)	429
BspT107I	GGYRCC	1 cut(s)	657
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	921
BsrI	ACTGG	1 cut(s)	652
BssECI	CCNNGG	3 cut(s)	105, 521, 862
BssMI	GATC	4 cut(s)	3, 73, 315, 507
BssNI	GRCGYC	1 cut(s)	588
BssT1I	CCWWGG	2 cut(s)	105, 862
Bst2UI	CCWGG	3 cut(s)	197, 522, 578
Bst4CI	ACNGT	1 cut(s)	545
Bst6I	CTCTTC	2 cut(s)	252, 327
BstACI	GRCGYC	1 cut(s)	588
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstBI	TTCGAA	1 cut(s)	429
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	5 cut(s)	62, 309, 350, 537, 939
BstF5I	GGATG	1 cut(s)	645
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	4 cut(s)	6, 76, 318, 510
BstMAI	GTCTC	2 cut(s)	42, 95
BstMBI	GATC	4 cut(s)	3, 73, 315, 507
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 65, 151, 233, 715
BstNI	CCWGG	3 cut(s)	197, 522, 578
BstSCI	CCNGG	3 cut(s)	195, 520, 576
BstSFI	CTRYAG	3 cut(s)	10, 367, 852
BstV1I	GCAGC	5 cut(s)	43, 62, 67, 127, 211
BstXI	CCANNNNNNTGG	1 cut(s)	668
BsuI	GTATCC	1 cut(s)	528
BsuRI	GGCC	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	645
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	7 cut(s)	37, 70, 227, 284, 358, 659, 719
Cac8I	GCNNGC	1 cut(s)	306
CaiI	CAGNNNCTG	1 cut(s)	56
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	181, 193
CviAII	CATG	5 cut(s)	266, 326, 460, 693, 710
DdeI	CTNAG	5 cut(s)	62, 309, 350, 537, 939
DpnI	GATC	4 cut(s)	5, 75, 317, 509
DpnII	GATC	4 cut(s)	3, 73, 315, 507
DraIII	CACNNNGTG	1 cut(s)	664
Eam1104I	CTCTTC	2 cut(s)	252, 327
EarI	CTCTTC	2 cut(s)	252, 327
Ecl136II	GAGCTC	1 cut(s)	968
Eco130I	CCWWGG	2 cut(s)	105, 862
Eco24I	GRGCYC	1 cut(s)	970
Eco31I	GGTCTC	1 cut(s)	95
Eco32I	GATATC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	968
Eco57I	CTGAAG	2 cut(s)	167, 846
Eco88I	CYCGRG	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	968
EcoO109I	RGGNCCY	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	679
EcoRII	CCWGG	3 cut(s)	195, 520, 576
EcoRV	GATATC	1 cut(s)	358
EcoT14I	CCWWGG	2 cut(s)	105, 862
EcoT22I	ATGCAT	1 cut(s)	698
EcoT38I	GRGCYC	1 cut(s)	970
ErhI	CCWWGG	2 cut(s)	105, 862
FaeI	CATG	5 cut(s)	269, 329, 463, 696, 713
FaqI	GGGAC	1 cut(s)	514
FatI	CATG	5 cut(s)	265, 325, 459, 692, 709
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	858
Fnu4HI	GCNGC	7 cut(s)	51, 54, 57, 81, 116, 225, 582
FokI	GGATG	1 cut(s)	632
FriOI	GRGCYC	1 cut(s)	970
Fsp4HI	GCNGC	7 cut(s)	51, 54, 57, 81, 116, 225, 582
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	7 cut(s)	51, 54, 57, 81, 116, 225, 582
GsuI	CTGGAG	2 cut(s)	119, 560
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	2 cut(s)	47, 607
HhaI	GCGC	1 cut(s)	156
Hin1I	GRCGYC	1 cut(s)	588
Hin1II	CATG	5 cut(s)	269, 329, 463, 696, 713
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	773
HinfI	GANTC	2 cut(s)	134, 390
HpaII	CCGG	2 cut(s)	47, 607
HphI	GGTGA	1 cut(s)	129
Hpy166II	GTNNAC	2 cut(s)	217, 859
Hpy188I	TCNGA	4 cut(s)	549, 600, 771, 942
Hpy188III	TCNNGA	4 cut(s)	98, 394, 635, 833
Hpy8I	GTNNAC	2 cut(s)	217, 859
HpyAV	CCTTC	2 cut(s)	484, 752
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	5 cut(s)	227, 604, 696, 854, 914
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 65, 151, 233, 715
HpyF3I	CTNAG	5 cut(s)	62, 309, 350, 537, 939
HpySE526I	ACGT	1 cut(s)	588
Hsp92I	GRCGYC	1 cut(s)	588
Hsp92II	CATG	5 cut(s)	269, 329, 463, 696, 713
HspAI	GCGC	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 73, 315, 507
LmnI	GCTCC	3 cut(s)	549, 715, 965
Lsp1109I	GCAGC	5 cut(s)	43, 62, 67, 127, 211
LweI	GCATC	2 cut(s)	591, 705
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	1 cut(s)	907
MalI	GATC	4 cut(s)	5, 75, 317, 509
MboI	GATC	4 cut(s)	3, 73, 315, 507
MboII	GAAGA	7 cut(s)	160, 269, 344, 547, 893, 931, 955
MfeI	CAATTG	1 cut(s)	495
MhlI	GDGCHC	1 cut(s)	970
MluCI	AATT	6 cut(s)	128, 206, 433, 495, 630, 679
MmeI	TCCRAC	2 cut(s)	527, 735
MnlI	CCTC	8 cut(s)	64, 154, 253, 328, 582, 706, 795, 860
Mph1103I	ATGCAT	1 cut(s)	698
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	4 cut(s)	90, 737, 813, 991
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	2 cut(s)	47, 607
MspR9I	CCNGG	3 cut(s)	197, 522, 578
MunI	CAATTG	1 cut(s)	495
Mva1269I	GAATGC	1 cut(s)	118
MvaI	CCWGG	3 cut(s)	197, 522, 578
MwoI	GCNNNNNNNGC	5 cut(s)	56, 65, 151, 233, 715
NdeII	GATC	4 cut(s)	3, 73, 315, 507
NlaIII	CATG	5 cut(s)	269, 329, 463, 696, 713
NlaIV	GGNNCC	2 cut(s)	659, 717
NsiI	ATGCAT	1 cut(s)	698
NspV	TTCGAA	1 cut(s)	429
PctI	GAATGC	1 cut(s)	118
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	134, 390
PkrI	GCNGC	7 cut(s)	52, 55, 58, 82, 117, 226, 583
PpuMI	RGGWCCY	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	970
Psp5II	RGGWCCY	1 cut(s)	193
Psp6I	CCWGG	3 cut(s)	195, 520, 576
PspGI	CCWGG	3 cut(s)	195, 520, 576
PspN4I	GGNNCC	2 cut(s)	659, 717
PspPI	GGNCC	2 cut(s)	181, 193
PspPPI	RGGWCCY	1 cut(s)	193
PstI	CTGCAG	1 cut(s)	856
PstNI	CAGNNNCTG	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	970
SaqAI	TTAA	4 cut(s)	90, 737, 813, 991
SatI	GCNGC	7 cut(s)	51, 54, 57, 81, 116, 225, 582
Sau3AI	GATC	4 cut(s)	3, 73, 315, 507
Sau96I	GGNCC	2 cut(s)	181, 193
ScrFI	CCNGG	3 cut(s)	197, 522, 578
SduI	GDGCHC	1 cut(s)	970
SfaNI	GCATC	2 cut(s)	591, 705
SfcI	CTRYAG	3 cut(s)	10, 367, 852
SfuI	TTCGAA	1 cut(s)	429
SinI	GGWCC	1 cut(s)	193
SmlI	CTYRAG	2 cut(s)	188, 831
SmoI	CTYRAG	2 cut(s)	188, 831
Sse9I	AATT	6 cut(s)	128, 206, 433, 495, 630, 679
SsiI	CCGC	3 cut(s)	54, 68, 581
SspI	AATATT	1 cut(s)	732
SstI	GAGCTC	1 cut(s)	970
StyD4I	CCNGG	3 cut(s)	195, 520, 576
StyI	CCWWGG	2 cut(s)	105, 862
TaaI	ACNGT	1 cut(s)	545
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	3 cut(s)	24, 429, 634
TasI	AATT	6 cut(s)	128, 206, 433, 495, 630, 679
TauI	GCSGC	2 cut(s)	56, 584
TfiI	GAWTC	2 cut(s)	134, 390
Tru1I	TTAA	4 cut(s)	90, 737, 813, 991
Tru9I	TTAA	4 cut(s)	90, 737, 813, 991
TscAI	CASTG	7 cut(s)	37, 70, 234, 291, 358, 659, 726
TseI	GCWGC	5 cut(s)	50, 56, 80, 115, 224
TspDTI	ATGAA	5 cut(s)	312, 345, 654, 932, 942
TspGWI	ACGGA	1 cut(s)	518
TspRI	CASTG	7 cut(s)	37, 70, 234, 291, 358, 659, 726
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	3 cut(s)	206, 433, 679
XmiI	GTMKAC	1 cut(s)	858
XmnI	GAANNNNTTC	1 cut(s)	248
ZraI	GACGTC	1 cut(s)	589
Zsp2I	ATGCAT	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.