Rw2G030960

Nucleosome assembly protein (NAP)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
50851573 .. 50855527
3955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G030960.1

Sequence Viewer

Length: 1524 bp
ATGATCAACTACAGAGATAAACTCGAACGCAGTGTGTCTCTCATTCCGGGAGCCGCTGCTCTCAGTGCGGAGGATCGTGCTGCTCTTGTTAAAGCTCTGGAGACCTTGGTTGGGCAGCATTCTAACAAATTGGAATCACCTGAGCTGAAGAAGCGCATTGAGGCTTTGACAGAAATACAGCGCCAACTCAAGGACCTGGAAACAAAATTTTTTGAGGAGAGGGCTGCACTGAAAGCTAAACAGAAGCGTTTCCAAGAAGAGGGGCATGACTTTAGGCTTTATACACTGAAAAAAATGAAGTGCTTGCTAAGGAGCCTATATTGGAGAAGGCGATTGGGTATCTCTAATTCTTCTGTGCTGTACTTATTTATTTCATTTCTCTCCTTTTTTTCTCAAGTTGGGTTAACTTGTAGGACGGAGATCAAGTGGTATCCAGGGAAAATCTTTGCTGAGAACTGTCGGAGCTTCTTCAACTTCTTTCAACCTCTCCAGGCGGCAGACGTCCAAAGTCAGATGCACCGGAGTTATGGCATTTTTTCAACAATTCGAGATGAGATCATCCCGCAGTGGCACCAAGTGAATGGGAAAAAGTTTTCTTTCCAGAATTCTCATAATTCATACAACTACGGAGGGCATCAGGAGCCACTGGAAATAATATTTTTAGGAGAGAGAGCTGTGTTGGAAGGAAAATATCAGAAACTTTACGAACCTCTCTACGAAAAGAGATATGAGATTGTTAATGGTATAACTGAAGTTCAAGAAACGAAAAGTGAAACTGCAGTAGACCAAGAAGGAGGTAAAGCCACAGAAGAGAAAGGAGTGCCTTACTTTTGGGTTACTGCAATGAAGAATGATGAAGTACTTGGTCAGAAGGTCACAAAGTCTGATGACGGAGCTCTCAAATATCTCAAAGAGATCAAGTGGTGTAGGATAGACAATTCAAAGGGGTTCAAGCTGGAGTTCTTCTTTGATCCAAATCCATATTTTAAAAACACTGTCCTGACAAAAGCATATCATATGAGTAGTGACAGTCAAATGTTAGAGAAGACAACTGGGACAAACATCAACTGGCATCCTGGCAAAAGCTTGACACCTAGTCTTCTGAAGAAGCCAAGAAAGCGATCAAAGAATGCTGAATTCCTGACCAAACAGCAAAGCTTTTTCAACTTTTTTCACACTCCCGAGTATCCTGGGTTTCCTTGGGATTCATCAACTTATACACATCATGATAATTTCCAAAAAATTGAAGATCAATTCGAAGTTCAGAGGGATCTGGATTATGAAGTTGGTAAAACTATTCGAGACAGGGTCATTCCTCATGCAGTATCACTTTTCACTGGGGAAGCTGTTGAGCGGGGCACTTATTTTGAAGATTTAGATGATGATGATGATTTAAATGATGATGATTATTATTCTGATGATGATGATGAGGAGGGGGAGGCTGTTGAGCAGGACACTAAGTTTAGACTGTTCGATAATGATTATGATGCGGAGGAGGAGGATGAATTTGAGGAAGATCCTTGA

Protein Analysis

507

Amino Acids

59.37

Weight (kDa)

5.26

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 214 - 448 4.1e-62 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016369)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 504
AccB1I GGYRCC 1 cut(s) 570
AccBSI CCGCTC 1 cut(s) 1354
AccI GTMKAC 1 cut(s) 783
AciI CCGC 6 cut(s) 54, 68, 494, 563, 1354, 1490
AclWI GGATC 4 cut(s) 81, 965, 1278, 1511
AcsI RAATTY 4 cut(s) 206, 604, 1136, 1505
AcuI CTGAAG 3 cut(s) 167, 771, 1124
AcyI GRCGYC 1 cut(s) 501
AdeI CACNNNGTG 1 cut(s) 577
AfaI GTAC 2 cut(s) 362, 861
AfiI CCNNNNNNNGG 3 cut(s) 111, 190, 259
AgsI TTSAA 9 cut(s) 472, 482, 540, 758, 942, 952, 1165, 1247, 1370
AhdI GACNNNNNGTC 1 cut(s) 1095
AjnI CCWGG 5 cut(s) 195, 433, 489, 1075, 1189
Alw21I GWGCWC 1 cut(s) 898
Alw26I GTCTC 3 cut(s) 42, 95, 1296
AlwI GGATC 4 cut(s) 81, 965, 1278, 1511
Ama87I CYCGRG 1 cut(s) 1181
ApeKI GCWGC 4 cut(s) 56, 80, 115, 224
ApoI RAATTY 4 cut(s) 206, 604, 1136, 1505
Asp700I GAANNNNTTC 1 cut(s) 248
AspLEI GCGC 2 cut(s) 156, 183
AspS9I GGNCC 1 cut(s) 193
AsuC2I CCSGG 1 cut(s) 48
AsuHPI GGTGA 1 cut(s) 129
AsuII TTCGAA 1 cut(s) 1257
AvaI CYCGRG 1 cut(s) 1181
AvaII GGWCC 1 cut(s) 193
BaeGI GKGCMC 1 cut(s) 1361
BanI GGYRCC 1 cut(s) 570
BanII GRGCYC 1 cut(s) 898
BbsI GAAGAC 2 cut(s) 1052, 1091
Bbv12I GWGCWC 1 cut(s) 898
BbvI GCAGC 4 cut(s) 43, 67, 127, 211
BciT130I CCWGG 5 cut(s) 197, 435, 491, 1077, 1191
BciVI GTATCC 2 cut(s) 441, 1197
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 48
BcoDI GTCTC 3 cut(s) 42, 95, 1296
BfaI CTAG 1 cut(s) 1095
BfmI CTRYAG 2 cut(s) 10, 777
BfoI RGCGCY 1 cut(s) 184
BfuI GTATCC 2 cut(s) 441, 1197
BisI GCNGC 6 cut(s) 54, 57, 81, 116, 225, 495
BlsI GCNGC 6 cut(s) 55, 58, 82, 117, 226, 496
BmcAI AGTACT 1 cut(s) 861
Bme1390I CCNGG 6 cut(s) 48, 197, 435, 491, 1077, 1191
Bme18I GGWCC 1 cut(s) 193
BmeRI GACNNNNNGTC 1 cut(s) 1095
BmeT110I CYCGRG 1 cut(s) 1181
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 4 cut(s) 52, 314, 572, 642
BmrFI CCNGG 6 cut(s) 48, 197, 435, 491, 1077, 1191
BmrI ACTGGG 2 cut(s) 1062, 1347
BmsI GCATC 4 cut(s) 504, 643, 1081, 1477
BmuI ACTGGG 2 cut(s) 1062, 1347
BpiI GAAGAC 2 cut(s) 1052, 1091
BplI GAGNNNNNCTC 1 cut(s) 38
BpmI CTGGAG 3 cut(s) 119, 473, 977
Bpu10I CCTNAGC 2 cut(s) 141, 308
Bpu14I TTCGAA 1 cut(s) 1257
BpuEI CTTGAG 2 cut(s) 173, 378
BpuMI CCSGG 1 cut(s) 48
BsaBI GATNNNNATC 1 cut(s) 975
BsaHI GRCGYC 1 cut(s) 501
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 4 cut(s) 105, 434, 1190, 1199
BsaWI WCCGGW 1 cut(s) 519
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 190, 259
Bse1I ACTGG 4 cut(s) 651, 1057, 1073, 1342
Bse3DI GCAATG 1 cut(s) 849
Bse8I GATNNNNATC 1 cut(s) 975
BseBI CCWGG 5 cut(s) 197, 435, 491, 1077, 1191
BseDI CCNNGG 4 cut(s) 105, 434, 1190, 1199
BseGI GGATG 3 cut(s) 558, 1072, 1507
BseJI GATNNNNATC 1 cut(s) 975
BseLI CCNNNNNNNGG 3 cut(s) 111, 190, 259
BseMI GCAATG 1 cut(s) 849
BseMII CTCAG 3 cut(s) 76, 132, 441
BseNI ACTGG 4 cut(s) 651, 1057, 1073, 1342
BseRI GAGGAG 4 cut(s) 230, 1445, 1508, 1511
BseSI GKGCMC 1 cut(s) 1361
BseXI GCAGC 4 cut(s) 43, 67, 127, 211
BsgI GTGCAG 1 cut(s) 210
BshNI GGYRCC 1 cut(s) 570
BsiHKAI GWGCWC 1 cut(s) 898
BsiHKCI CYCGRG 1 cut(s) 1181
BsiSI CCGG 2 cut(s) 47, 520
BslFI GGGAC 1 cut(s) 1069
BslI CCNNNNNNNGG 3 cut(s) 111, 190, 259
BsmAI GTCTC 3 cut(s) 42, 95, 1296
BsmFI GGGAC 1 cut(s) 1069
BsmI GAATGC 2 cut(s) 118, 1135
Bso31I GGTCTC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 1181
Bsp119I TTCGAA 1 cut(s) 1257
Bsp1286I GDGCHC 2 cut(s) 898, 1361
BspACI CCGC 6 cut(s) 54, 68, 494, 563, 1354, 1490
BspCNI CTCAG 3 cut(s) 75, 133, 442
BspHI TCATGA 1 cut(s) 1225
BspLI GGNNCC 4 cut(s) 52, 314, 572, 642
BspMAI CTGCAG 1 cut(s) 781
BspPI GGATC 4 cut(s) 81, 965, 1278, 1511
BspT104I TTCGAA 1 cut(s) 1257
BspT107I GGYRCC 1 cut(s) 570
BspTNI GGTCTC 1 cut(s) 95
BsrBI CCGCTC 1 cut(s) 1354
BsrDI GCAATG 1 cut(s) 849
BsrI ACTGG 4 cut(s) 651, 1057, 1073, 1342
BssECI CCNNGG 4 cut(s) 105, 434, 1190, 1199
BssNI GRCGYC 1 cut(s) 501
BssT1I CCWWGG 2 cut(s) 105, 1199
Bst2UI CCWGG 5 cut(s) 197, 435, 491, 1077, 1191
Bst4CI ACNGT 4 cut(s) 458, 997, 1031, 1470
Bst6I CTCTTC 2 cut(s) 252, 804
BstACI GRCGYC 1 cut(s) 501
BstBI TTCGAA 1 cut(s) 1257
BstC8I GCNNGC 1 cut(s) 305
BstDEI CTNAG 5 cut(s) 62, 141, 308, 450, 1458
BstF5I GGATG 3 cut(s) 558, 1072, 1507
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 2 cut(s) 156, 183
BstMAI GTCTC 3 cut(s) 42, 95, 1296
BstMWI GCNNNNNNNGC 5 cut(s) 65, 151, 233, 640, 1117
BstNI CCWGG 5 cut(s) 197, 435, 491, 1077, 1191
BstSCI CCNGG 6 cut(s) 46, 195, 433, 489, 1075, 1189
BstSFI CTRYAG 2 cut(s) 10, 777
BstSLI GKGCMC 1 cut(s) 1361
BstV1I GCAGC 4 cut(s) 43, 67, 127, 211
BstV2I GAAGAC 2 cut(s) 1052, 1091
BstX2I RGATCY 2 cut(s) 1270, 1516
BstXI CCANNNNNNTGG 1 cut(s) 581
BstYI RGATCY 2 cut(s) 1270, 1516
BsuI GTATCC 2 cut(s) 441, 1197
BtsCI GGATG 3 cut(s) 558, 1072, 1507
BtsI GCAGTG 2 cut(s) 37, 572
BtsIMutI CAGTG 8 cut(s) 37, 70, 227, 284, 572, 644, 993, 1335
Cac8I GCNNGC 1 cut(s) 305
CciI TCATGA 1 cut(s) 1225
CfoI GCGC 2 cut(s) 156, 183
Cfr13I GGNCC 1 cut(s) 193
Csp6I GTAC 2 cut(s) 361, 860
CviAII CATG 3 cut(s) 266, 1226, 1319
CviQI GTAC 2 cut(s) 361, 860
DdeI CTNAG 5 cut(s) 62, 141, 308, 450, 1458
DraI TTTAAA 2 cut(s) 988, 1395
DraIII CACNNNGTG 1 cut(s) 577
DriI GACNNNNNGTC 1 cut(s) 1095
Eam1104I CTCTTC 2 cut(s) 252, 804
Eam1105I GACNNNNNGTC 1 cut(s) 1095
EarI CTCTTC 2 cut(s) 252, 804
Ecl136II GAGCTC 1 cut(s) 896
Eco130I CCWWGG 2 cut(s) 105, 1199
Eco24I GRGCYC 1 cut(s) 898
Eco31I GGTCTC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 193
Eco53kI GAGCTC 1 cut(s) 896
Eco57I CTGAAG 3 cut(s) 167, 771, 1124
Eco88I CYCGRG 1 cut(s) 1181
EcoICRI GAGCTC 1 cut(s) 896
EcoO109I RGGNCCY 1 cut(s) 193
EcoRI GAATTC 2 cut(s) 604, 1136
EcoRII CCWGG 5 cut(s) 195, 433, 489, 1075, 1189
EcoT14I CCWWGG 2 cut(s) 105, 1199
EcoT38I GRGCYC 1 cut(s) 898
ErhI CCWWGG 2 cut(s) 105, 1199
FaeI CATG 3 cut(s) 269, 1229, 1322
FaqI GGGAC 1 cut(s) 1069
FatI CATG 3 cut(s) 265, 1225, 1318
FauI CCCGC 2 cut(s) 570, 1347
FauNDI CATATG 1 cut(s) 1017
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 783
Fnu4HI GCNGC 6 cut(s) 54, 57, 81, 116, 225, 495
FokI GGATG 3 cut(s) 545, 1059, 1514
FriOI GRGCYC 1 cut(s) 898
Fsp4HI GCNGC 6 cut(s) 54, 57, 81, 116, 225, 495
FspBI CTAG 1 cut(s) 1095
GlaI GCGC 2 cut(s) 155, 182
GluI GCNGC 6 cut(s) 54, 57, 81, 116, 225, 495
GsuI CTGGAG 3 cut(s) 119, 473, 977
HaeII RGCGCY 1 cut(s) 184
HapII CCGG 2 cut(s) 47, 520
HhaI GCGC 2 cut(s) 156, 183
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 3 cut(s) 269, 1229, 1322
Hin6I GCGC 2 cut(s) 154, 181
HinP1I GCGC 2 cut(s) 154, 181
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HindIII AAGCTT 2 cut(s) 1084, 1156
HinfI GANTC 2 cut(s) 134, 1205
HpaI GTTAAC 1 cut(s) 405
HpaII CCGG 2 cut(s) 47, 520
HphI GGTGA 1 cut(s) 129
Hpy166II GTNNAC 2 cut(s) 405, 784
Hpy188I TCNGA 8 cut(s) 462, 513, 696, 870, 886, 1104, 1266, 1417
Hpy8I GTNNAC 2 cut(s) 405, 784
HpyAV CCTTC 4 cut(s) 321, 677, 785, 865
HpyCH4III ACNGT 4 cut(s) 458, 997, 1031, 1470
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 5 cut(s) 227, 517, 779, 842, 1322
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 151, 233, 640, 1117
HpyF3I CTNAG 5 cut(s) 62, 141, 308, 450, 1458
HpySE526I ACGT 1 cut(s) 501
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 3 cut(s) 269, 1229, 1322
HspAI GCGC 2 cut(s) 154, 181
Ksp22I TGATCA 1 cut(s) 3
KspAI GTTAAC 1 cut(s) 405
LmnI GCTCC 5 cut(s) 50, 312, 462, 640, 893
Lsp1109I GCAGC 4 cut(s) 43, 67, 127, 211
LweI GCATC 4 cut(s) 504, 643, 1081, 1477
MaeI CTAG 1 cut(s) 1095
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 3 cut(s) 835, 874, 1025
MbiI CCGCTC 1 cut(s) 1354
MflI RGATCY 2 cut(s) 1270, 1516
MhlI GDGCHC 2 cut(s) 898, 1361
MmeI TCCRAC 2 cut(s) 440, 660
MroXI GAANNNNTTC 1 cut(s) 248
MseI TTAA 5 cut(s) 90, 404, 738, 987, 1394
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 2 cut(s) 47, 520
MspR9I CCNGG 6 cut(s) 48, 197, 435, 491, 1077, 1191
Mva1269I GAATGC 2 cut(s) 118, 1135
MvaI CCWGG 5 cut(s) 197, 435, 491, 1077, 1191
MwoI GCNNNNNNNGC 5 cut(s) 65, 151, 233, 640, 1117
NciI CCSGG 1 cut(s) 48
NdeI CATATG 1 cut(s) 1017
NlaIII CATG 3 cut(s) 269, 1229, 1322
NlaIV GGNNCC 4 cut(s) 52, 314, 572, 642
NmuCI GTSAC 2 cut(s) 874, 1025
NspV TTCGAA 1 cut(s) 1257
PagI TCATGA 1 cut(s) 1225
PctI GAATGC 2 cut(s) 118, 1135
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 2 cut(s) 134, 1205
PflFI GACNNNGTC 1 cut(s) 1307
PfoI TCCNGGA 1 cut(s) 46
PkrI GCNGC 6 cut(s) 55, 58, 82, 117, 226, 496
PpuMI RGGWCCY 1 cut(s) 193
Psp124BI GAGCTC 1 cut(s) 898
Psp5II RGGWCCY 1 cut(s) 193
Psp6I CCWGG 5 cut(s) 195, 433, 489, 1075, 1189
PspGI CCWGG 5 cut(s) 195, 433, 489, 1075, 1189
PspN4I GGNNCC 4 cut(s) 52, 314, 572, 642
PspPI GGNCC 1 cut(s) 193
PspPPI RGGWCCY 1 cut(s) 193
PstI CTGCAG 1 cut(s) 781
PsuI RGATCY 2 cut(s) 1270, 1516
PsyI GACNNNGTC 1 cut(s) 1307
RsaI GTAC 2 cut(s) 362, 861
RsaNI GTAC 2 cut(s) 361, 860
SacI GAGCTC 1 cut(s) 898
SaqAI TTAA 5 cut(s) 90, 404, 738, 987, 1394
SatI GCNGC 6 cut(s) 54, 57, 81, 116, 225, 495
Sau96I GGNCC 1 cut(s) 193
ScaI AGTACT 1 cut(s) 861
ScrFI CCNGG 6 cut(s) 48, 197, 435, 491, 1077, 1191
SduI GDGCHC 2 cut(s) 898, 1361
SfaNI GCATC 4 cut(s) 504, 643, 1081, 1477
SfcI CTRYAG 2 cut(s) 10, 777
SfuI TTCGAA 1 cut(s) 1257
SinI GGWCC 1 cut(s) 193
SmiI ATTTAAAT 1 cut(s) 1395
SmlI CTYRAG 2 cut(s) 188, 393
SmoI CTYRAG 2 cut(s) 188, 393
SsiI CCGC 6 cut(s) 54, 68, 494, 563, 1354, 1490
SspI AATATT 1 cut(s) 657
SspMI CTAG 1 cut(s) 1095
SstI GAGCTC 1 cut(s) 898
StyD4I CCNGG 6 cut(s) 46, 195, 433, 489, 1075, 1189
StyI CCWWGG 2 cut(s) 105, 1199
SwaI ATTTAAAT 1 cut(s) 1395
TaaI ACNGT 4 cut(s) 458, 997, 1031, 1470
TaiI ACGT 1 cut(s) 504
TaqI TCGA 5 cut(s) 24, 547, 1257, 1300, 1473
TatI WGTACW 2 cut(s) 360, 859
TauI GCSGC 2 cut(s) 56, 497
TfiI GAWTC 2 cut(s) 134, 1205
Tru1I TTAA 5 cut(s) 90, 404, 738, 987, 1394
Tru9I TTAA 5 cut(s) 90, 404, 738, 987, 1394
TscAI CASTG 8 cut(s) 37, 70, 234, 291, 572, 651, 1000, 1342
TseFI GTSAC 2 cut(s) 874, 1025
TseI GCWGC 4 cut(s) 56, 80, 115, 224
Tsp45I GTSAC 2 cut(s) 874, 1025
TspDTI ATGAA 8 cut(s) 311, 363, 606, 860, 870, 1197, 1296, 1518
TspGWI ACGGA 3 cut(s) 431, 642, 906
TspRI CASTG 8 cut(s) 37, 70, 234, 291, 572, 651, 1000, 1342
Tth111I GACNNNGTC 1 cut(s) 1307
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 4 cut(s) 206, 604, 1136, 1505
XmiI GTMKAC 1 cut(s) 783
XmnI GAANNNNTTC 1 cut(s) 248
XspI CTAG 1 cut(s) 1095
ZraI GACGTC 1 cut(s) 502
ZrmI AGTACT 1 cut(s) 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.