FvH4_6g30063

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016369
Physical Location & Seq
Forward (+)
23217439 .. 23219176
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30063.t1

Sequence Viewer

Length: 918 bp
ATGTTTTTGGGGGAGAGAGCTGTGTTGGAAGGAAAATTTCAGAAGCTGTATGAACCTCTCTACAAAAAGAGATATGAGATTGTTAATGGTACAACAGAAGTTCAAAAAACCAAAAAAAGAACTGCAGTAGACCAAGAAGGAGATAAAGCCAGAGCAGAGAAAGGAGTGCCTTACTTTTGGGCTACTGCATTGAAGAATGAAGTACTTGCTCAGAAGATTACAAAGTGTGATGACGGAGCTCTCAAATATCTCAAAGATCTCAAGTGGTGTAGGATAAAAAAGTCGAAGGGGTTCAAGCTGGAGTTCTTCTTTGATCCAAATCCATTTTTCAAAAACACTGTCCTAACGAAAGCATATTATATGAGTAGTGACAGTCCACCAATGTTGGAGAAGACAATTGGGACAAACATAAACTGGCATCCTGGCAAAAGCTTGACAGCTAGTCTTCTGAAGAGGCCAAGAAAGCGATCAAAGAATGCTGAATTCATGACCAAACAGCGAAGTTTTTTCAACTTCTTTAACACTCTTGAGTATCCTGAGCTTCCTGATGATTACACAACTTATATGCATCATGATAATTTCCGAAAAATTGAAGATCAATTTGAAGTTCAGAAGGATCTTGATTATGAAGTTGGTAAAACCATTCGAGACAAGATCATTCCGCATGCAGTATCACTTTTCACCGGGGAAGCTGTTGAGCGGGGTACTGATTGTGAAGATCTAGATGATGATGATGATTTAAATGATGACTACTATTCTGATGATGAGGAGGAAGAGGATGTTGTTGATGATGAAGACAATTATAATGATGCTGATGATGAGGAGAAGAATGAGGATGAGGATGATGATGATGATAAAGATGATGAGGACGATAAAGATGATGAGGACAATGAGGACGAGTTTGAGGACGATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

306

Amino Acids

35.92

Weight (kDa)

4.43

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 4 - 230 6.1e-59 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g30051 FvH4_6g30060 FvH4_6g30063
rosa_chinensis RchiOBHm_Chr2g0136101
rosa_laevigata RLG00000019503
rosa_multiflora Rmu_sc0002070.1_g000009 Rmu_sc0002986.1_g000017
rosa_roxburghii Rroxscaffold_2G00108490
rosa_rugosa Rorug02G0328000 Rorug02G0328100
rosa_samantha Rh2AG379800 Rh2BG386600 Rh2CG365800 Rh2DG402700
rosa_wichuraiana Rw2G030960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 804
AccBSI CCGCTC 1 cut(s) 700
AccI GTMKAC 1 cut(s) 129
AciI CCGC 2 cut(s) 662, 700
AclWI GGATC 2 cut(s) 308, 624
AcsI RAATTY 2 cut(s) 35, 482
AcuI CTGAAG 1 cut(s) 470
AfaI GTAC 3 cut(s) 91, 204, 706
AgsI TTSAA 7 cut(s) 104, 193, 295, 331, 511, 593, 605
AhdI GACNNNNNGTC 1 cut(s) 441
AjnI CCWGG 1 cut(s) 421
AluBI AGCT 8 cut(s) 20, 46, 239, 298, 432, 440, 541, 692
AluI AGCT 8 cut(s) 20, 46, 239, 298, 432, 440, 541, 692
Alw21I GWGCWC 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 642
AlwI GGATC 2 cut(s) 308, 624
AlwNI CAGNNNCTG 1 cut(s) 46
AoxI GGCC 1 cut(s) 455
ApoI RAATTY 2 cut(s) 35, 482
ArsI GACNNNNNNTTYG 2 cut(s) 324, 356
Asp700I GAANNNNTTC 1 cut(s) 290
AsuC2I CCSGG 1 cut(s) 685
AsuHPI GGTGA 1 cut(s) 673
BanII GRGCYC 1 cut(s) 241
BbsI GAAGAC 3 cut(s) 398, 437, 801
Bbv12I GWGCWC 1 cut(s) 241
BciT130I CCWGG 1 cut(s) 423
BciVI GTATCC 1 cut(s) 543
BcnI CCSGG 1 cut(s) 685
BcoDI GTCTC 1 cut(s) 642
BfaI CTAG 2 cut(s) 441, 722
BfmI CTRYAG 1 cut(s) 123
BfuI GTATCC 1 cut(s) 543
BglII AGATCT 2 cut(s) 256, 718
BmcAI AGTACT 1 cut(s) 204
Bme1390I CCNGG 2 cut(s) 423, 685
BmeRI GACNNNNNGTC 1 cut(s) 441
BmrFI CCNGG 2 cut(s) 423, 685
BmsI GCATC 3 cut(s) 427, 577, 799
BpiI GAAGAC 3 cut(s) 398, 437, 801
BpmI CTGGAG 1 cut(s) 320
Bpu10I CCTNAGC 1 cut(s) 537
BpuEI CTTGAG 2 cut(s) 245, 548
BpuMI CCSGG 1 cut(s) 685
BsaBI GATNNNNATC 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 684
Bse1I ACTGG 1 cut(s) 419
Bse8I GATNNNNATC 1 cut(s) 318
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 684
BseGI GGATG 4 cut(s) 418, 784, 841, 847
BseJI GATNNNNATC 1 cut(s) 318
BseMII CTCAG 2 cut(s) 224, 528
BseNI ACTGG 1 cut(s) 419
BseRI GAGGAG 2 cut(s) 782, 836
BshFI GGCC 1 cut(s) 457
BsiHKAI GWGCWC 1 cut(s) 241
BsiSI CCGG 1 cut(s) 684
BslFI GGGAC 1 cut(s) 415
BsmAI GTCTC 1 cut(s) 642
BsmFI GGGAC 1 cut(s) 415
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 1 cut(s) 457
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 7 cut(s) 256, 313, 467, 595, 616, 654, 718
BspACI CCGC 2 cut(s) 662, 700
BspANI GGCC 1 cut(s) 457
BspCNI CTCAG 2 cut(s) 223, 529
BspHI TCATGA 2 cut(s) 486, 571
BspMAI CTGCAG 1 cut(s) 127
BspPI GGATC 2 cut(s) 308, 624
BsrBI CCGCTC 1 cut(s) 700
BsrI ACTGG 1 cut(s) 419
BssECI CCNNGG 1 cut(s) 684
BssMI GATC 7 cut(s) 256, 313, 467, 595, 616, 654, 718
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 340, 374
Bst6I CTCTTC 2 cut(s) 446, 768
BstC8I GCNNGC 1 cut(s) 666
BstDEI CTNAG 2 cut(s) 210, 537
BstF5I GGATG 4 cut(s) 418, 784, 841, 847
BstKTI GATC 7 cut(s) 259, 316, 470, 598, 619, 657, 721
BstMAI GTCTC 1 cut(s) 642
BstMBI GATC 7 cut(s) 256, 313, 467, 595, 616, 654, 718
BstMWI GCNNNNNNNGC 1 cut(s) 463
BstNI CCWGG 1 cut(s) 423
BstNSI RCATGY 1 cut(s) 668
BstSCI CCNGG 2 cut(s) 421, 683
BstSFI CTRYAG 1 cut(s) 123
BstV2I GAAGAC 3 cut(s) 398, 437, 801
BstX2I RGATCY 3 cut(s) 256, 616, 718
BstYI RGATCY 3 cut(s) 256, 616, 718
BsuI GTATCC 1 cut(s) 543
BsuRI GGCC 1 cut(s) 457
BtsCI GGATG 4 cut(s) 418, 784, 841, 847
BtsIMutI CAGTG 1 cut(s) 336
Cac8I GCNNGC 1 cut(s) 666
CaiI CAGNNNCTG 1 cut(s) 46
CciI TCATGA 2 cut(s) 486, 571
Csp6I GTAC 3 cut(s) 90, 203, 705
CspCI CAANNNNNGTGG 2 cut(s) 366, 401
CviAII CATG 3 cut(s) 487, 572, 665
CviQI GTAC 3 cut(s) 90, 203, 705
DdeI CTNAG 2 cut(s) 210, 537
DpnI GATC 7 cut(s) 258, 315, 469, 597, 618, 656, 720
DpnII GATC 7 cut(s) 256, 313, 467, 595, 616, 654, 718
DraI TTTAAA 1 cut(s) 741
DriI GACNNNNNGTC 1 cut(s) 441
Eam1104I CTCTTC 2 cut(s) 446, 768
Eam1105I GACNNNNNGTC 1 cut(s) 441
EarI CTCTTC 2 cut(s) 446, 768
Ecl136II GAGCTC 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 239
Eco57I CTGAAG 1 cut(s) 470
EcoICRI GAGCTC 1 cut(s) 239
EcoRI GAATTC 1 cut(s) 482
EcoRII CCWGG 1 cut(s) 421
EcoT22I ATGCAT 1 cut(s) 570
EcoT38I GRGCYC 1 cut(s) 241
FaeI CATG 3 cut(s) 490, 575, 668
FaqI GGGAC 1 cut(s) 415
FatI CATG 3 cut(s) 486, 571, 664
FauI CCCGC 1 cut(s) 693
FblI GTMKAC 1 cut(s) 129
FokI GGATG 4 cut(s) 405, 791, 848, 854
FriOI GRGCYC 1 cut(s) 241
FspBI CTAG 2 cut(s) 441, 722
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 1 cut(s) 457
HapII CCGG 1 cut(s) 684
Hin1II CATG 3 cut(s) 490, 575, 668
HindIII AAGCTT 1 cut(s) 430
HpaII CCGG 1 cut(s) 684
HphI GGTGA 1 cut(s) 673
Hpy166II GTNNAC 2 cut(s) 130, 377
Hpy188I TCNGA 6 cut(s) 42, 213, 450, 584, 612, 760
Hpy188III TCNNGA 8 cut(s) 487, 527, 536, 545, 572, 620, 647, 722
Hpy8I GTNNAC 2 cut(s) 130, 377
HpyAV CCTTC 4 cut(s) 23, 131, 280, 607
HpyCH4III ACNGT 2 cut(s) 340, 374
HpyCH4V TGCA 4 cut(s) 125, 188, 568, 668
HpyF10VI GCNNNNNNNGC 1 cut(s) 463
HpyF3I CTNAG 2 cut(s) 210, 537
Hsp92II CATG 3 cut(s) 490, 575, 668
Kzo9I GATC 7 cut(s) 256, 313, 467, 595, 616, 654, 718
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 8 cut(s) 163, 284, 400, 408, 435, 549, 558, 697
LweI GCATC 3 cut(s) 427, 577, 799
MaeI CTAG 2 cut(s) 441, 722
MaeIII GTNAC 1 cut(s) 368
MalI GATC 7 cut(s) 258, 315, 469, 597, 618, 656, 720
MbiI CCGCTC 1 cut(s) 700
MboI GATC 7 cut(s) 256, 313, 467, 595, 616, 654, 718
MfeI CAATTG 1 cut(s) 396
MflI RGATCY 3 cut(s) 256, 616, 718
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 7 cut(s) 35, 396, 482, 577, 588, 599, 799
MmeI TCCRAC 2 cut(s) 6, 366
Mph1103I ATGCAT 1 cut(s) 570
MroXI GAANNNNTTC 1 cut(s) 290
MseI TTAA 3 cut(s) 84, 519, 740
MspI CCGG 1 cut(s) 684
MspR9I CCNGG 2 cut(s) 423, 685
MunI CAATTG 1 cut(s) 396
Mva1269I GAATGC 1 cut(s) 481
MvaI CCWGG 1 cut(s) 423
MwoI GCNNNNNNNGC 1 cut(s) 463
NciI CCSGG 1 cut(s) 685
NdeII GATC 7 cut(s) 256, 313, 467, 595, 616, 654, 718
NlaIII CATG 3 cut(s) 490, 575, 668
NmuCI GTSAC 1 cut(s) 368
NsiI ATGCAT 1 cut(s) 570
NspI RCATGY 1 cut(s) 668
PaeI GCATGC 1 cut(s) 668
PagI TCATGA 2 cut(s) 486, 571
PctI GAATGC 1 cut(s) 481
PdmI GAANNNNTTC 1 cut(s) 290
PsiI TTATAA 1 cut(s) 804
Psp124BI GAGCTC 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PstI CTGCAG 1 cut(s) 127
PstNI CAGNNNCTG 1 cut(s) 46
PsuI RGATCY 3 cut(s) 256, 616, 718
RsaI GTAC 3 cut(s) 91, 204, 706
RsaNI GTAC 3 cut(s) 90, 203, 705
SacI GAGCTC 1 cut(s) 241
SaqAI TTAA 3 cut(s) 84, 519, 740
Sau3AI GATC 7 cut(s) 256, 313, 467, 595, 616, 654, 718
ScaI AGTACT 1 cut(s) 204
ScrFI CCNGG 2 cut(s) 423, 685
SduI GDGCHC 1 cut(s) 241
SetI ASST 9 cut(s) 22, 48, 58, 241, 300, 434, 442, 543, 694
SfaNI GCATC 3 cut(s) 427, 577, 799
SfcI CTRYAG 1 cut(s) 123
SmiI ATTTAAAT 1 cut(s) 741
SmlI CTYRAG 2 cut(s) 260, 527
SmoI CTYRAG 2 cut(s) 260, 527
SphI GCATGC 1 cut(s) 668
Sse9I AATT 7 cut(s) 35, 396, 482, 577, 588, 599, 799
SsiI CCGC 2 cut(s) 662, 700
SspMI CTAG 2 cut(s) 441, 722
SstI GAGCTC 1 cut(s) 241
StyD4I CCNGG 2 cut(s) 421, 683
SwaI ATTTAAAT 1 cut(s) 741
TaaI ACNGT 2 cut(s) 340, 374
TaqI TCGA 2 cut(s) 284, 646
TasI AATT 7 cut(s) 35, 396, 482, 577, 588, 599, 799
TatI WGTACW 1 cut(s) 202
Tru1I TTAA 3 cut(s) 84, 519, 740
Tru9I TTAA 3 cut(s) 84, 519, 740
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 1 cut(s) 368
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 5 cut(s) 66, 213, 475, 642, 807
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 1 cut(s) 343
XapI RAATTY 2 cut(s) 35, 482
XbaI TCTAGA 1 cut(s) 721
XceI RCATGY 1 cut(s) 668
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 2 cut(s) 441, 722
ZrmI AGTACT 1 cut(s) 204
Zsp2I ATGCAT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.