Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002986.1

Orthogroup ID

OG0016369

Physical Location & Seq

Genomic Coordinates Forward (+)

77977 .. 81103

Gene Structure 3127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002986.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

atgcttcagaccttggttgggcagcattgtaacaaattggaatcacccgagctgaagaagcgcattgaggctttgacagaaatacagcgccaactcaaggacctggaaacaaaattttttgaggagagggctgcactgaaagctaaacagaagcgtttccaagaagaggggcatgactttaggctttatacactgaaaaataatgaagtgcttgctaaggagatcacagagcatgatgaagaggctttcaagtatctcagtgatatcaactgctgtaggataggcagttctaatggattcaagatggagtttatctttaatcctaacccctactttgaaaattctgtattgaaaaagacataccacatgactaatgacaataagcctatattggagaaggcgattgggacggagatcaagtggtatccagggaaaatctttactgagaactgtcggagcttcttcaacttctttcaacctctccaggcggcagacgtccaaagtcagatgcaccggagttatggcattttttcaacaattcgagatgagatcatcccgcagtggcaccaagtgaatgggaaaaagaattctcataattcatacaactacggagggcatcaggagccactggaaataatatttttaggagagagagctgtgttggaaggaaaatatcagaaactttacgaacctctctacgaaaagagatatgagattgttaatggtataactgaagttcaagaaacgaaaagtgaaactgcagtagaccaaggaggtaaagccacagaagagaaaggagtgccttacttttgggttactgcaatgaagaatgatgcagtacttggtcagaaggtcacaaagtctgatgacggagctctcaaatatctcaaagagatcaagtggtgtaggatagacaattcgaaggggttcaagctggagttcttctttgatccaaatccatattttaaaaacactgtcctgacaaaagcatatcatatgagtagtgacagtcaaatgttagagaagacaactgggacaaacatcaactggcatcctggcaaaagcttgacacctagtcttctgaagaagccaagaaagcgatcaaagaatgctgaattcctgaccaaacagcaaagctttttcaacttttttcacactcccgagtatcctgggtttccttgggattcatcaacttatacacatcatgataatttccaaaaaattcggggcacttattttgaagatttagatgatgatgatgatttaaatgatgatgattattattctgatgatgatgatgaggagggggaggctgttgagcaggacactaagtttagattgttcgataatgattatgatgcggaggaggaggatgaatttgaggaagatccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

464

Amino Acids

54.5

Weight (kDa)

5.15

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016369)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30051 FvH4_6g30060 FvH4_6g30063
rosa_chinensis	RchiOBHm_Chr2g0136101
rosa_laevigata	RLG00000019503
rosa_multiflora	Rmu_sc0002070.1_g000009 Rmu_sc0002986.1_g000017
rosa_roxburghii	Rroxscaffold_2G00108490
rosa_rugosa	Rorug02G0328000 Rorug02G0328100
rosa_samantha	Rh2AG379800 Rh2BG386600 Rh2CG365800 Rh2DG402700
rosa_wichuraiana	Rw2G030960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	498
AccB1I	GGYRCC	1 cut(s)	564
AccI	GTMKAC	1 cut(s)	765
AciI	CCGC	3 cut(s)	488, 557, 1361
AclWI	GGATC	2 cut(s)	944, 1382
AcsI	RAATTY	6 cut(s)	113, 340, 586, 1115, 1221, 1376
AcuI	CTGAAG	3 cut(s)	74, 753, 1103
AcyI	GRCGYC	1 cut(s)	495
AdeI	CACNNNGTG	1 cut(s)	571
AfaI	GTAC	1 cut(s)	840
AfiI	CCNNNNNNNGG	3 cut(s)	18, 97, 166
AhdI	GACNNNNNGTC	1 cut(s)	1074
AjnI	CCWGG	5 cut(s)	102, 427, 483, 1054, 1168
AloI	GAACNNNNNNTCC	2 cut(s)	271, 303
AluBI	AGCT	8 cut(s)	52, 143, 459, 656, 875, 934, 1065, 1137
AluI	AGCT	8 cut(s)	52, 143, 459, 656, 875, 934, 1065, 1137
Alw21I	GWGCWC	1 cut(s)	877
AlwI	GGATC	2 cut(s)	944, 1382
Ama87I	CYCGRG	2 cut(s)	47, 1160
ApeKI	GCWGC	2 cut(s)	22, 131
ApoI	RAATTY	6 cut(s)	113, 340, 586, 1115, 1221, 1376
Asp700I	GAANNNNTTC	2 cut(s)	155, 926
AspLEI	GCGC	2 cut(s)	63, 90
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	36
AsuII	TTCGAA	1 cut(s)	920
AvaI	CYCGRG	2 cut(s)	47, 1160
AvaII	GGWCC	1 cut(s)	100
BaeGI	GKGCMC	1 cut(s)	1232
BanI	GGYRCC	1 cut(s)	564
BanII	GRGCYC	1 cut(s)	877
BbsI	GAAGAC	2 cut(s)	1031, 1070
Bbv12I	GWGCWC	1 cut(s)	877
BbvI	GCAGC	2 cut(s)	34, 118
BccI	CCATC	1 cut(s)	298
BciT130I	CCWGG	5 cut(s)	104, 429, 485, 1056, 1170
BciVI	GTATCC	2 cut(s)	435, 1176
BfaI	CTAG	1 cut(s)	1074
BfmI	CTRYAG	2 cut(s)	274, 759
BfoI	RGCGCY	1 cut(s)	91
BfuI	GTATCC	2 cut(s)	435, 1176
BisI	GCNGC	3 cut(s)	23, 132, 489
BlsI	GCNGC	3 cut(s)	24, 133, 490
BmcAI	AGTACT	1 cut(s)	840
Bme1390I	CCNGG	5 cut(s)	104, 429, 485, 1056, 1170
Bme18I	GGWCC	1 cut(s)	100
BmeRI	GACNNNNNGTC	1 cut(s)	1074
BmeT110I	CYCGRG	2 cut(s)	47, 1160
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	2 cut(s)	566, 624
BmrFI	CCNGG	5 cut(s)	104, 429, 485, 1056, 1170
BmrI	ACTGGG	1 cut(s)	1041
BmsI	GCATC	5 cut(s)	498, 625, 823, 1060, 1348
BmuI	ACTGGG	1 cut(s)	1041
BpiI	GAAGAC	2 cut(s)	1031, 1070
BpmI	CTGGAG	2 cut(s)	467, 956
Bpu10I	CCTNAGC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	920
BpuEI	CTTGAG	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	954
BsaHI	GRCGYC	1 cut(s)	495
BsaJI	CCNNGG	5 cut(s)	12, 428, 769, 1169, 1178
BsaWI	WCCGGW	1 cut(s)	513
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 97, 166
Bse1I	ACTGG	3 cut(s)	633, 1036, 1052
Bse3DI	GCAATG	1 cut(s)	828
Bse8I	GATNNNNATC	1 cut(s)	954
BseBI	CCWGG	5 cut(s)	104, 429, 485, 1056, 1170
BseDI	CCNNGG	5 cut(s)	12, 428, 769, 1169, 1178
BseGI	GGATG	3 cut(s)	552, 1051, 1378
BseJI	GATNNNNATC	1 cut(s)	954
BseLI	CCNNNNNNNGG	3 cut(s)	18, 97, 166
BseMI	GCAATG	1 cut(s)	828
BseMII	CTCAG	2 cut(s)	271, 435
BseNI	ACTGG	3 cut(s)	633, 1036, 1052
BseRI	GAGGAG	4 cut(s)	137, 1316, 1379, 1382
BseSI	GKGCMC	1 cut(s)	1232
BseXI	GCAGC	2 cut(s)	34, 118
BsgI	GTGCAG	1 cut(s)	117
BshNI	GGYRCC	1 cut(s)	564
BsiHKAI	GWGCWC	1 cut(s)	877
BsiHKCI	CYCGRG	2 cut(s)	47, 1160
BsiSI	CCGG	1 cut(s)	514
BslFI	GGGAC	2 cut(s)	421, 1048
BslI	CCNNNNNNNGG	3 cut(s)	18, 97, 166
BsmFI	GGGAC	2 cut(s)	421, 1048
BsmI	GAATGC	1 cut(s)	1114
BsoBI	CYCGRG	2 cut(s)	47, 1160
Bsp119I	TTCGAA	1 cut(s)	920
Bsp1286I	GDGCHC	2 cut(s)	877, 1232
Bsp143I	GATC	7 cut(s)	222, 414, 549, 894, 949, 1100, 1387
BspACI	CCGC	3 cut(s)	488, 557, 1361
BspCNI	CTCAG	2 cut(s)	270, 436
BspHI	TCATGA	1 cut(s)	1204
BspLI	GGNNCC	2 cut(s)	566, 624
BspMAI	CTGCAG	1 cut(s)	763
BspPI	GGATC	2 cut(s)	944, 1382
BspT104I	TTCGAA	1 cut(s)	920
BspT107I	GGYRCC	1 cut(s)	564
BsrDI	GCAATG	1 cut(s)	828
BsrI	ACTGG	3 cut(s)	633, 1036, 1052
BssECI	CCNNGG	5 cut(s)	12, 428, 769, 1169, 1178
BssMI	GATC	7 cut(s)	222, 414, 549, 894, 949, 1100, 1387
BssNI	GRCGYC	1 cut(s)	495
BssT1I	CCWWGG	3 cut(s)	12, 769, 1178
Bst2UI	CCWGG	5 cut(s)	104, 429, 485, 1056, 1170
Bst4CI	ACNGT	3 cut(s)	452, 976, 1010
Bst6I	CTCTTC	3 cut(s)	159, 234, 783
BstACI	GRCGYC	1 cut(s)	495
BstBI	TTCGAA	1 cut(s)	920
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	4 cut(s)	216, 257, 444, 1329
BstF5I	GGATG	3 cut(s)	552, 1051, 1378
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	2 cut(s)	63, 90
BstKTI	GATC	7 cut(s)	225, 417, 552, 897, 952, 1103, 1390
BstMBI	GATC	7 cut(s)	222, 414, 549, 894, 949, 1100, 1387
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 140, 622, 1096
BstNI	CCWGG	5 cut(s)	104, 429, 485, 1056, 1170
BstSCI	CCNGG	5 cut(s)	102, 427, 483, 1054, 1168
BstSFI	CTRYAG	2 cut(s)	274, 759
BstSLI	GKGCMC	1 cut(s)	1232
BstV1I	GCAGC	2 cut(s)	34, 118
BstV2I	GAAGAC	2 cut(s)	1031, 1070
BstX2I	RGATCY	1 cut(s)	1387
BstXI	CCANNNNNNTGG	1 cut(s)	575
BstYI	RGATCY	1 cut(s)	1387
BsuI	GTATCC	2 cut(s)	435, 1176
BtsCI	GGATG	3 cut(s)	552, 1051, 1378
BtsI	GCAGTG	1 cut(s)	566
BtsIMutI	CAGTG	6 cut(s)	134, 191, 265, 566, 626, 972
Cac8I	GCNNGC	1 cut(s)	213
CciI	TCATGA	1 cut(s)	1204
CfoI	GCGC	2 cut(s)	63, 90
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	839
CviAII	CATG	4 cut(s)	173, 233, 367, 1205
CviQI	GTAC	1 cut(s)	839
DdeI	CTNAG	4 cut(s)	216, 257, 444, 1329
DpnI	GATC	7 cut(s)	224, 416, 551, 896, 951, 1102, 1389
DpnII	GATC	7 cut(s)	222, 414, 549, 894, 949, 1100, 1387
DraI	TTTAAA	2 cut(s)	967, 1266
DraIII	CACNNNGTG	1 cut(s)	571
DriI	GACNNNNNGTC	1 cut(s)	1074
Eam1104I	CTCTTC	3 cut(s)	159, 234, 783
Eam1105I	GACNNNNNGTC	1 cut(s)	1074
EarI	CTCTTC	3 cut(s)	159, 234, 783
Ecl136II	GAGCTC	1 cut(s)	875
Eco130I	CCWWGG	3 cut(s)	12, 769, 1178
Eco24I	GRGCYC	1 cut(s)	877
Eco32I	GATATC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	875
Eco57I	CTGAAG	3 cut(s)	74, 753, 1103
Eco88I	CYCGRG	2 cut(s)	47, 1160
EcoICRI	GAGCTC	1 cut(s)	875
EcoO109I	RGGNCCY	1 cut(s)	100
EcoRI	GAATTC	2 cut(s)	586, 1115
EcoRII	CCWGG	5 cut(s)	102, 427, 483, 1054, 1168
EcoRV	GATATC	1 cut(s)	265
EcoT14I	CCWWGG	3 cut(s)	12, 769, 1178
EcoT38I	GRGCYC	1 cut(s)	877
ErhI	CCWWGG	3 cut(s)	12, 769, 1178
FaeI	CATG	4 cut(s)	176, 236, 370, 1208
FaqI	GGGAC	2 cut(s)	421, 1048
FatI	CATG	4 cut(s)	172, 232, 366, 1204
FauI	CCCGC	1 cut(s)	564
FauNDI	CATATG	1 cut(s)	996
FblI	GTMKAC	1 cut(s)	765
Fnu4HI	GCNGC	3 cut(s)	23, 132, 489
FokI	GGATG	3 cut(s)	539, 1038, 1385
FriOI	GRGCYC	1 cut(s)	877
Fsp4HI	GCNGC	3 cut(s)	23, 132, 489
FspBI	CTAG	1 cut(s)	1074
GlaI	GCGC	2 cut(s)	62, 89
GluI	GCNGC	3 cut(s)	23, 132, 489
GsuI	CTGGAG	2 cut(s)	467, 956
HaeII	RGCGCY	1 cut(s)	91
HapII	CCGG	1 cut(s)	514
HhaI	GCGC	2 cut(s)	63, 90
Hin1I	GRCGYC	1 cut(s)	495
Hin1II	CATG	4 cut(s)	176, 236, 370, 1208
Hin6I	GCGC	2 cut(s)	61, 88
HinP1I	GCGC	2 cut(s)	61, 88
HindIII	AAGCTT	2 cut(s)	1063, 1135
HinfI	GANTC	3 cut(s)	41, 297, 1184
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	1 cut(s)	766
Hpy188I	TCNGA	8 cut(s)	9, 456, 507, 678, 849, 865, 1083, 1288
Hpy188III	TCNNGA	8 cut(s)	301, 542, 620, 740, 979, 1120, 1160, 1205
Hpy8I	GTNNAC	1 cut(s)	766
HpyAV	CCTTC	4 cut(s)	391, 659, 844, 916
HpyCH4III	ACNGT	3 cut(s)	452, 976, 1010
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	5 cut(s)	134, 511, 761, 821, 836
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 140, 622, 1096
HpyF3I	CTNAG	4 cut(s)	216, 257, 444, 1329
HpySE526I	ACGT	1 cut(s)	495
Hsp92I	GRCGYC	1 cut(s)	495
Hsp92II	CATG	4 cut(s)	176, 236, 370, 1208
HspAI	GCGC	2 cut(s)	61, 88
Kzo9I	GATC	7 cut(s)	222, 414, 549, 894, 949, 1100, 1387
LmnI	GCTCC	3 cut(s)	456, 622, 872
Lsp1109I	GCAGC	2 cut(s)	34, 118
LweI	GCATC	5 cut(s)	498, 625, 823, 1060, 1348
MaeI	CTAG	1 cut(s)	1074
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	4 cut(s)	29, 814, 853, 1004
MalI	GATC	7 cut(s)	224, 416, 551, 896, 951, 1102, 1389
MboI	GATC	7 cut(s)	222, 414, 549, 894, 949, 1100, 1387
MflI	RGATCY	1 cut(s)	1387
MhlI	GDGCHC	2 cut(s)	877, 1232
MmeI	TCCRAC	2 cut(s)	434, 642
MroXI	GAANNNNTTC	2 cut(s)	155, 926
MseI	TTAA	4 cut(s)	318, 720, 966, 1265
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	5 cut(s)	104, 429, 485, 1056, 1170
Mva1269I	GAATGC	1 cut(s)	1114
MvaI	CCWGG	5 cut(s)	104, 429, 485, 1056, 1170
MwoI	GCNNNNNNNGC	4 cut(s)	58, 140, 622, 1096
NdeI	CATATG	1 cut(s)	996
NdeII	GATC	7 cut(s)	222, 414, 549, 894, 949, 1100, 1387
NlaIII	CATG	4 cut(s)	176, 236, 370, 1208
NlaIV	GGNNCC	2 cut(s)	566, 624
NmuCI	GTSAC	2 cut(s)	853, 1004
NspV	TTCGAA	1 cut(s)	920
PagI	TCATGA	1 cut(s)	1204
PctI	GAATGC	1 cut(s)	1114
PdmI	GAANNNNTTC	2 cut(s)	155, 926
PfeI	GAWTC	3 cut(s)	41, 297, 1184
PkrI	GCNGC	3 cut(s)	24, 133, 490
PpuMI	RGGWCCY	1 cut(s)	100
Psp124BI	GAGCTC	1 cut(s)	877
Psp5II	RGGWCCY	1 cut(s)	100
Psp6I	CCWGG	5 cut(s)	102, 427, 483, 1054, 1168
PspGI	CCWGG	5 cut(s)	102, 427, 483, 1054, 1168
PspN4I	GGNNCC	2 cut(s)	566, 624
PspPI	GGNCC	1 cut(s)	100
PspPPI	RGGWCCY	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	763
PsuI	RGATCY	1 cut(s)	1387
RsaI	GTAC	1 cut(s)	840
RsaNI	GTAC	1 cut(s)	839
SacI	GAGCTC	1 cut(s)	877
SaqAI	TTAA	4 cut(s)	318, 720, 966, 1265
SatI	GCNGC	3 cut(s)	23, 132, 489
Sau3AI	GATC	7 cut(s)	222, 414, 549, 894, 949, 1100, 1387
Sau96I	GGNCC	1 cut(s)	100
ScaI	AGTACT	1 cut(s)	840
ScrFI	CCNGG	5 cut(s)	104, 429, 485, 1056, 1170
SduI	GDGCHC	2 cut(s)	877, 1232
SfaNI	GCATC	5 cut(s)	498, 625, 823, 1060, 1348
SfcI	CTRYAG	2 cut(s)	274, 759
SfuI	TTCGAA	1 cut(s)	920
SinI	GGWCC	1 cut(s)	100
SmiI	ATTTAAAT	1 cut(s)	1266
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SsiI	CCGC	3 cut(s)	488, 557, 1361
SspI	AATATT	1 cut(s)	639
SspMI	CTAG	1 cut(s)	1074
SstI	GAGCTC	1 cut(s)	877
StyD4I	CCNGG	5 cut(s)	102, 427, 483, 1054, 1168
StyI	CCWWGG	3 cut(s)	12, 769, 1178
SwaI	ATTTAAAT	1 cut(s)	1266
TaaI	ACNGT	3 cut(s)	452, 976, 1010
TaiI	ACGT	1 cut(s)	498
TaqI	TCGA	3 cut(s)	541, 920, 1344
TatI	WGTACW	1 cut(s)	838
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	3 cut(s)	41, 297, 1184
Tru1I	TTAA	4 cut(s)	318, 720, 966, 1265
Tru9I	TTAA	4 cut(s)	318, 720, 966, 1265
TscAI	CASTG	6 cut(s)	141, 198, 265, 566, 633, 979
TseFI	GTSAC	2 cut(s)	853, 1004
TseI	GCWGC	2 cut(s)	22, 131
Tsp45I	GTSAC	2 cut(s)	853, 1004
TspDTI	ATGAA	6 cut(s)	219, 252, 588, 839, 1176, 1389
TspGWI	ACGGA	3 cut(s)	425, 624, 885
TspRI	CASTG	6 cut(s)	141, 198, 265, 566, 633, 979
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	6 cut(s)	113, 340, 586, 1115, 1221, 1376
XmiI	GTMKAC	1 cut(s)	765
XmnI	GAANNNNTTC	2 cut(s)	155, 926
XspI	CTAG	1 cut(s)	1074
ZraI	GACGTC	1 cut(s)	496
ZrmI	AGTACT	1 cut(s)	840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.