Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0016369

Physical Location & Seq

Genomic Coordinates Reverse (-)

40232872 .. 40239726

Gene Structure 6855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0328000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGTATTGTAATTGCTATTATTTAAAGTTTTATTGCAGACATCTTATGGCTAGAACAAGAGGTAAATCTATGGAGGAGTTGATTCCACCTACACCTGTGAAACCGAGAAAGACAAAACGTGGGTCTACTTCTGGTCCATTCAAACGACCTCGGCCTAACATATCTACTCAAAATCAACTAGAAATGGCACCTGTGAGACATAGAGTTGTTCAATCAGAGACACAATCACATCAGCATCATGAGTCAGGATCTAGACATGACTCCACTAGTCATGAGGAGACTCTGCCAACCCAATCAAATGAGCCAGACCAAACTGAAATCCAAGGAGTTAAGAAAGGTCGGGGTGCTGCTTGTGAAATGGAAGAGTGGGGGACTGGAAAAATAATACATATTGAATTTGGTGCTAATTGGATGCCTATTAATGAAGATGGAAAGAGGTTTAGTTCCCAACTTGGAGTCTTGGCTCGAGATGGGCAGAAGGTTCCTCTAACATATACTTCATGGAGTGGCATGCCTCCTGATGTATTAAATGGCATTTGGAAAGATGTCAAGGACAACACCGATGTCCCAGATGAATATAAACATAGTTGCTTGAAGGTGGTTGGTAACAGATGGAGGGATTGGAAGAGTCGAGTCAAGACACGATGGTATGATAAATATGAAACTGATGAGGAACGACTAGCAATCACGCCTAATCAGGTTGTTAGAGATCAATGGATACTATTAGTAAAGTATTGGGGTCTTCCGGATGTACAGGAGCTGTGTGAGACAAATAAACTTAGCCGTGCACAAGGAGGAGCCCCTCATAGAACTGGTCGAAAATCTTTTGCTAGAATACGGAAAGAGAGTCAATTCAATGATTATTTGGAGGAGAGGCCTGCAGATGAAGAAGATGATTCATTTCGAGAGGAGGTATTTACTAAAGTGATGGGAGAAGATACACATGGAAGTGTCCGCATGTACGGGACAGGAGTAACTCCATCTCAAATATTTGGTCAAACTTCGACAACTTCTGGAATTAATGAAAAAAGAACATTGGAGGACATGGAAAGAAACTATGAGTCCAAGCTAAATGATCTTAAAAGTGGCTATGAATCTCAACTGGGAGAGATGAAATCAAAGTATGATGATATGAAATCAAAGTATGATGATGTATCGTCACGATTGGATCTTTTAATGGCTCATGTGGGCATACAAGTGAACTCAAGTGGCACTAGAAGTGATCAGATTCCAGATGGCCAATTAGATAGAGAAGGGCAGCAACAAATGTCTTTGTCAACTTCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

429

Amino Acids

49.25

Weight (kDa)

6.66

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	237 - 286	3.3e-10	Plant transposase (Ptta/En/Spm family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016369)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30051 FvH4_6g30060 FvH4_6g30063
rosa_chinensis	RchiOBHm_Chr2g0136101
rosa_laevigata	RLG00000019503
rosa_multiflora	Rmu_sc0002070.1_g000009 Rmu_sc0002986.1_g000017
rosa_roxburghii	Rroxscaffold_2G00108490
rosa_rugosa	Rorug02G0328000 Rorug02G0328100
rosa_samantha	Rh2AG379800 Rh2BG386600 Rh2CG365800 Rh2DG402700
rosa_wichuraiana	Rw2G030960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	187
AccI	GTMKAC	1 cut(s)	125
AccIII	TCCGGA	1 cut(s)	745
AciI	CCGC	1 cut(s)	955
AclWI	GGATC	2 cut(s)	256, 1176
AcoI	YGGCCR	1 cut(s)	1237
AcsI	RAATTY	1 cut(s)	395
AfaI	GTAC	2 cut(s)	753, 962
AgsI	TTSAA	6 cut(s)	142, 212, 395, 595, 856, 1284
AhlI	ACTAGT	1 cut(s)	266
AluBI	AGCT	2 cut(s)	760, 1069
AluI	AGCT	2 cut(s)	760, 1069
Alw21I	GWGCWC	1 cut(s)	790
Alw26I	GTCTC	4 cut(s)	190, 212, 272, 761
Alw44I	GTGCAC	1 cut(s)	786
AlwI	GGATC	2 cut(s)	256, 1176
AlwNI	CAGNNNCTG	1 cut(s)	760
Ama87I	CYCGRG	1 cut(s)	465
Aor13HI	TCCGGA	1 cut(s)	745
AoxI	GGCC	3 cut(s)	152, 875, 1237
ApaLI	GTGCAC	1 cut(s)	786
ApeKI	GCWGC	2 cut(s)	347, 1258
ApoI	RAATTY	1 cut(s)	395
ArsI	GACNNNNNNTTYG	4 cut(s)	107, 139, 979, 1011
AseI	ATTAAT	2 cut(s)	420, 1020
AspS9I	GGNCC	1 cut(s)	134
AvaI	CYCGRG	1 cut(s)	465
AvaII	GGWCC	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	790
BalI	TGGCCA	1 cut(s)	1239
BanI	GGYRCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	802
BbsI	GAAGAC	1 cut(s)	734
Bbv12I	GWGCWC	1 cut(s)	790
BbvI	GCAGC	2 cut(s)	334, 1270
BccI	CCATC	7 cut(s)	422, 464, 606, 639, 922, 988, 1229
BceAI	ACGGC	1 cut(s)	768
BciVI	GTATCC	1 cut(s)	711
BclI	TGATCA	1 cut(s)	1222
BcoDI	GTCTC	4 cut(s)	190, 212, 272, 761
BcuI	ACTAGT	1 cut(s)	266
BfaI	CTAG	7 cut(s)	51, 179, 252, 267, 680, 831, 1215
BfmI	CTRYAG	1 cut(s)	879
BfuI	GTATCC	1 cut(s)	711
BisI	GCNGC	2 cut(s)	348, 1259
BlsI	GCNGC	2 cut(s)	349, 1260
Bme18I	GGWCC	1 cut(s)	134
BmeT110I	CYCGRG	1 cut(s)	465
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	3 cut(s)	189, 483, 799
BmrI	ACTGGG	1 cut(s)	1112
BmsI	GCATC	2 cut(s)	244, 402
BmuI	ACTGGG	1 cut(s)	1112
BpiI	GAAGAC	1 cut(s)	734
BpuEI	CTTGAG	1 cut(s)	1189
BsaJI	CCNNGG	2 cut(s)	149, 322
BsaWI	WCCGGW	1 cut(s)	745
Bse1I	ACTGG	3 cut(s)	379, 817, 1107
BseAI	TCCGGA	1 cut(s)	745
BseDI	CCNNGG	2 cut(s)	149, 322
BseGI	GGATG	2 cut(s)	417, 754
BseNI	ACTGG	3 cut(s)	379, 817, 1107
BseRI	GAGGAG	5 cut(s)	89, 290, 810, 884, 923
BseSI	GKGCMC	1 cut(s)	790
BseXI	GCAGC	2 cut(s)	334, 1270
BshFI	GGCC	3 cut(s)	154, 877, 1239
BshNI	GGYRCC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	790
BsiHKCI	CYCGRG	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	746
BslFI	GGGAC	3 cut(s)	385, 551, 979
BsmAI	GTCTC	4 cut(s)	190, 212, 272, 761
BsmFI	GGGAC	3 cut(s)	385, 551, 979
BsnI	GGCC	3 cut(s)	154, 877, 1239
BsoBI	CYCGRG	1 cut(s)	465
Bsp1286I	GDGCHC	2 cut(s)	790, 802
Bsp13I	TCCGGA	1 cut(s)	745
Bsp1407I	TGTACA	1 cut(s)	751
Bsp143I	GATC	5 cut(s)	248, 709, 1075, 1168, 1222
BspACI	CCGC	1 cut(s)	955
BspANI	GGCC	3 cut(s)	154, 877, 1239
BspEI	TCCGGA	1 cut(s)	745
BspHI	TCATGA	2 cut(s)	238, 271
BspLI	GGNNCC	3 cut(s)	189, 483, 799
BspMAI	CTGCAG	1 cut(s)	883
BspPI	GGATC	2 cut(s)	256, 1176
BspT107I	GGYRCC	1 cut(s)	187
BsrGI	TGTACA	1 cut(s)	751
BsrI	ACTGG	3 cut(s)	379, 817, 1107
BssECI	CCNNGG	2 cut(s)	149, 322
BssMI	GATC	5 cut(s)	248, 709, 1075, 1168, 1222
BssT1I	CCWWGG	1 cut(s)	322
Bst6I	CTCTTC	2 cut(s)	357, 620
BstAUI	TGTACA	1 cut(s)	751
BstC8I	GCNNGC	2 cut(s)	512, 879
BstDEI	CTNAG	1 cut(s)	779
BstF5I	GGATG	2 cut(s)	417, 754
BstKTI	GATC	5 cut(s)	251, 712, 1078, 1171, 1225
BstMAI	GTCTC	4 cut(s)	190, 212, 272, 761
BstMBI	GATC	5 cut(s)	248, 709, 1075, 1168, 1222
BstNSI	RCATGY	2 cut(s)	514, 961
BstSFI	CTRYAG	1 cut(s)	879
BstSLI	GKGCMC	1 cut(s)	790
BstV1I	GCAGC	2 cut(s)	334, 1270
BstV2I	GAAGAC	1 cut(s)	734
BstX2I	RGATCY	2 cut(s)	248, 1168
BstYI	RGATCY	2 cut(s)	248, 1168
BsuI	GTATCC	1 cut(s)	711
BsuRI	GGCC	3 cut(s)	154, 877, 1239
BtsCI	GGATG	2 cut(s)	417, 754
Cac8I	GCNNGC	2 cut(s)	512, 879
CaiI	CAGNNNCTG	1 cut(s)	760
CciI	TCATGA	2 cut(s)	238, 271
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	752, 961
CviAII	CATG	9 cut(s)	239, 257, 272, 501, 511, 944, 958, 1045, 1184
CviQI	GTAC	2 cut(s)	752, 961
DdeI	CTNAG	1 cut(s)	779
DpnI	GATC	5 cut(s)	250, 711, 1077, 1170, 1224
DpnII	GATC	5 cut(s)	248, 709, 1075, 1168, 1222
DraI	TTTAAA	1 cut(s)	24
EaeI	YGGCCR	1 cut(s)	1237
Eam1104I	CTCTTC	2 cut(s)	357, 620
EarI	CTCTTC	2 cut(s)	357, 620
Eco130I	CCWWGG	1 cut(s)	322
Eco147I	AGGCCT	1 cut(s)	877
Eco24I	GRGCYC	1 cut(s)	802
Eco47I	GGWCC	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	802
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	9 cut(s)	242, 260, 275, 504, 514, 947, 961, 1048, 1187
FaqI	GGGAC	3 cut(s)	385, 551, 979
FatI	CATG	9 cut(s)	238, 256, 271, 500, 510, 943, 957, 1044, 1183
FbaI	TGATCA	1 cut(s)	1222
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	2 cut(s)	348, 1259
FokI	GGATG	2 cut(s)	424, 761
FriOI	GRGCYC	1 cut(s)	802
Fsp4HI	GCNGC	2 cut(s)	348, 1259
FspBI	CTAG	7 cut(s)	51, 179, 252, 267, 680, 831, 1215
GluI	GCNGC	2 cut(s)	348, 1259
HaeIII	GGCC	3 cut(s)	154, 877, 1239
HapII	CCGG	1 cut(s)	746
Hin1II	CATG	9 cut(s)	242, 260, 275, 504, 514, 947, 961, 1048, 1187
HincII	GTYRAC	1 cut(s)	1278
HindII	GTYRAC	1 cut(s)	1278
HpaII	CCGG	1 cut(s)	746
Hpy166II	GTNNAC	4 cut(s)	126, 788, 1201, 1278
Hpy188I	TCNGA	2 cut(s)	217, 1227
Hpy8I	GTNNAC	4 cut(s)	126, 788, 1201, 1278
HpyAV	CCTTC	3 cut(s)	472, 589, 1247
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	3 cut(s)	36, 788, 881
HpyF3I	CTNAG	1 cut(s)	779
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	9 cut(s)	242, 260, 275, 504, 514, 947, 961, 1048, 1187
Kpn2I	TCCGGA	1 cut(s)	745
Ksp22I	TGATCA	1 cut(s)	1222
Kzo9I	GATC	5 cut(s)	248, 709, 1075, 1168, 1222
LmnI	GCTCC	2 cut(s)	757, 797
Lsp1109I	GCAGC	2 cut(s)	334, 1270
LweI	GCATC	2 cut(s)	244, 402
MaeI	CTAG	7 cut(s)	51, 179, 252, 267, 680, 831, 1215
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	3 cut(s)	605, 973, 1158
MalI	GATC	5 cut(s)	250, 711, 1077, 1170, 1224
MboI	GATC	5 cut(s)	248, 709, 1075, 1168, 1222
MboII	GAAGA	7 cut(s)	374, 437, 637, 734, 899, 902, 947
MflI	RGATCY	2 cut(s)	248, 1168
MhlI	GDGCHC	2 cut(s)	790, 802
MlsI	TGGCCA	1 cut(s)	1239
MluCI	AATT	6 cut(s)	10, 395, 406, 851, 1017, 1241
MluNI	TGGCCA	1 cut(s)	1239
MlyI	GAGTC	8 cut(s)	251, 254, 274, 465, 637, 642, 856, 1070
Mox20I	TGGCCA	1 cut(s)	1239
MroI	TCCGGA	1 cut(s)	745
MscI	TGGCCA	1 cut(s)	1239
MseI	TTAA	7 cut(s)	23, 330, 420, 527, 1020, 1080, 1175
MslI	CAYNNNNRTG	2 cut(s)	948, 1196
Msp20I	TGGCCA	1 cut(s)	1239
MspI	CCGG	1 cut(s)	746
NdeII	GATC	5 cut(s)	248, 709, 1075, 1168, 1222
NlaIII	CATG	9 cut(s)	242, 260, 275, 504, 514, 947, 961, 1048, 1187
NlaIV	GGNNCC	3 cut(s)	189, 483, 799
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	1158
NspI	RCATGY	2 cut(s)	514, 961
PaeI	GCATGC	1 cut(s)	514
PaeR7I	CTCGAG	1 cut(s)	465
PagI	TCATGA	2 cut(s)	238, 271
PceI	AGGCCT	1 cut(s)	877
PfeI	GAWTC	4 cut(s)	82, 896, 1094, 1228
PkrI	GCNGC	2 cut(s)	349, 1260
PleI	GAGTC	8 cut(s)	250, 254, 274, 464, 636, 641, 855, 1069
PpsI	GAGTC	8 cut(s)	250, 254, 274, 464, 636, 641, 855, 1069
PshBI	ATTAAT	2 cut(s)	420, 1020
PspN4I	GGNNCC	3 cut(s)	189, 483, 799
PspPI	GGNCC	1 cut(s)	134
PstI	CTGCAG	1 cut(s)	883
PstNI	CAGNNNCTG	1 cut(s)	760
PsuI	RGATCY	2 cut(s)	248, 1168
RsaI	GTAC	2 cut(s)	753, 962
RsaNI	GTAC	2 cut(s)	752, 961
RseI	CAYNNNNRTG	2 cut(s)	948, 1196
SaqAI	TTAA	7 cut(s)	23, 330, 420, 527, 1020, 1080, 1175
SatI	GCNGC	2 cut(s)	348, 1259
Sau3AI	GATC	5 cut(s)	248, 709, 1075, 1168, 1222
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	8 cut(s)	251, 254, 274, 465, 637, 642, 856, 1070
SduI	GDGCHC	2 cut(s)	790, 802
SfaNI	GCATC	2 cut(s)	244, 402
SfcI	CTRYAG	1 cut(s)	879
Sfr274I	CTCGAG	1 cut(s)	465
SinI	GGWCC	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	465
SmiMI	CAYNNNNRTG	2 cut(s)	948, 1196
SmlI	CTYRAG	2 cut(s)	465, 1204
SmoI	CTYRAG	2 cut(s)	465, 1204
SpeI	ACTAGT	1 cut(s)	266
SphI	GCATGC	1 cut(s)	514
Sse9I	AATT	6 cut(s)	10, 395, 406, 851, 1017, 1241
SseBI	AGGCCT	1 cut(s)	877
SsiI	CCGC	1 cut(s)	955
SspI	AATATT	1 cut(s)	990
SspMI	CTAG	7 cut(s)	51, 179, 252, 267, 680, 831, 1215
StuI	AGGCCT	1 cut(s)	877
StyI	CCWWGG	1 cut(s)	322
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	5 cut(s)	466, 631, 817, 904, 1004
TasI	AATT	6 cut(s)	10, 395, 406, 851, 1017, 1241
TatI	WGTACW	1 cut(s)	751
TfiI	GAWTC	4 cut(s)	82, 896, 1094, 1228
Tru1I	TTAA	7 cut(s)	23, 330, 420, 527, 1020, 1080, 1175
Tru9I	TTAA	7 cut(s)	23, 330, 420, 527, 1020, 1080, 1175
TseFI	GTSAC	1 cut(s)	1158
TseI	GCWGC	2 cut(s)	347, 1258
Tsp45I	GTSAC	1 cut(s)	1158
TspGWI	ACGGA	1 cut(s)	853
VneI	GTGCAC	1 cut(s)	786
VpaK11BI	GGWCC	1 cut(s)	134
VspI	ATTAAT	2 cut(s)	420, 1020
XapI	RAATTY	1 cut(s)	395
XbaI	TCTAGA	1 cut(s)	251
XceI	RCATGY	2 cut(s)	514, 961
XhoI	CTCGAG	1 cut(s)	465
XmiI	GTMKAC	1 cut(s)	125
XspI	CTAG	7 cut(s)	51, 179, 252, 267, 680, 831, 1215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.