Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0016369

Physical Location & Seq

Genomic Coordinates Forward (+)

58605422 .. 58610429

Gene Structure 5008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG402700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGTTGCTTGATGGCGATGAAAGGGAAATTTGGGCTCTCAGTGCGGAGGATCGTGCTGCTCTTGTTAAAGCTCTGGAGACCTTGGTTAACAAATTGGAATCACCCGAGCTGAAGAAGCGCATTGAGGCTTTGACAGAAATACAGCGCCAACTCAAGGACCTGGAAACAAAATTTTTTGAGGAGAGGGCTGCACTGAAAGCTAAACAGAAGCATTTCCAAGAAGAAGGACATCACTTTAGGCTTTATACACTGAAGAATAATGAAGTGCTTGCTAATGAGATCACAGAGCATGATGAAGAAGCTTTCAAGTATCTCAGTGATATCAACTGCTGTAGGATAGGCAGTTCTAATGGATTCAAGATGGAGTTTATCTTTAATCCTAACCCCTACTTTGAAAATTCTGTATTGAAAAAGACATACCACATGACTAATGACAATAAGCCTATATTGGAGAAGGTGATTGGGACGGAGATCAAGTGGTATCCAGGGAAAATCTTGACTGAGAACTGTCACAGCTTCTTCAACTGCTTTCAACCTCTCCAGGTCTGTAAGGATTATAATAAATATTTTGCACGTTTGAGGCGGGAGATGCACCGGGGTTATGACATTTTTTCAACAATTCGAGATGAGATCATCCCGCTGTGGCACCAAGTGAATGGGAAAAAGAATTCTCATAATTCATACAACTACGGAGGGCATCAGGAGCCACTGGAAATAATATTTTTAGGAGAGAGAGCTGTGTTGGAAGGAAAATATCAGAAGCTTTACGAACCTCTCTACGAAAAGGTCACAAAGTCTGATGACGGAGCTCTGAAATATCTCAAAGAGATCAAGTGGTGTAGGGTAGACAATTCGAAGGGGTTCAAGCTGGAGTTCTTCTTTGATCCAAATCCATATTTTAAAAACACTGTCCTGACAAAAGCATATCATATGAGTAGTGACAGTCAAATGTTAGAGAAGACAACTGGGACAAACATCAACTGGCATCCTGGCAAAAGCTTGACACCTAGTCTTCTGAAGAAGCCAAGAAAGCGATCAAAGAATGCTGAATTCCTGACCAAACAGCAAAGCTTTTTCAACTTTTTTAACACTCCCGAGTATCCTGGGTTTCCTTGGGATTCATCAACTTATACACATCATGATAATTTCCAAAAAATTGAAGATCAATTCGAAGTTCATAGGGATCTGGATTATGAAGTTGGTAAAACTATTCGAGACAGAGTCATTCCTCATGCAGTATCACTTTTCACTGGTGACGCTGTTGAGCGGGGCACTTATTTTGAAGATTTAGATGATGATGATGATTTAAATGATGATGATTATTATTCTGATGATGATGATGAGGAGGGGGAGGCTGTTGAGCCGGACACTAAGTTTAGACTGTTCGATAATGATGATGATGCGGAGGAGGAGGATGAATTTGAGGAAGATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

478

Amino Acids

56.4

Weight (kDa)

5.03

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	77 - 169	6.6e-26	Nucleosome assembly protein (NAP)
NAP	PF00956	262 - 419	1.6e-39	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016369)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30051 FvH4_6g30060 FvH4_6g30063
rosa_chinensis	RchiOBHm_Chr2g0136101
rosa_laevigata	RLG00000019503
rosa_multiflora	Rmu_sc0002070.1_g000009 Rmu_sc0002986.1_g000017
rosa_roxburghii	Rroxscaffold_2G00108490
rosa_rugosa	Rorug02G0328000 Rorug02G0328100
rosa_samantha	Rh2AG379800 Rh2BG386600 Rh2CG365800 Rh2DG402700
rosa_wichuraiana	Rw2G030960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	558
AccB1I	GGYRCC	1 cut(s)	645
AccBSI	CCGCTC	1 cut(s)	1267
AccI	GTMKAC	1 cut(s)	846
AciI	CCGC	5 cut(s)	44, 583, 638, 1267, 1403
AclWI	GGATC	4 cut(s)	57, 878, 1191, 1424
AcsI	RAATTY	6 cut(s)	27, 170, 397, 667, 1049, 1418
AcuI	CTGAAG	3 cut(s)	131, 272, 1037
AdeI	CACNNNGTG	1 cut(s)	652
AfiI	CCNNNNNNNGG	1 cut(s)	154
AhdI	GACNNNNNGTC	1 cut(s)	1008
AjnI	CCWGG	5 cut(s)	159, 484, 540, 988, 1102
AloI	GAACNNNNNNTCC	2 cut(s)	328, 360
Alw21I	GWGCWC	1 cut(s)	811
Alw26I	GTCTC	2 cut(s)	71, 1209
AlwI	GGATC	4 cut(s)	57, 878, 1191, 1424
Ama87I	CYCGRG	2 cut(s)	104, 1094
ApeKI	GCWGC	2 cut(s)	56, 188
ApoI	RAATTY	6 cut(s)	27, 170, 397, 667, 1049, 1418
Asp700I	GAANNNNTTC	2 cut(s)	212, 860
AspLEI	GCGC	2 cut(s)	120, 147
AspS9I	GGNCC	1 cut(s)	157
AsuC2I	CCSGG	1 cut(s)	596
AsuHPI	GGTGA	3 cut(s)	93, 469, 1265
AsuII	TTCGAA	2 cut(s)	854, 1170
AvaI	CYCGRG	2 cut(s)	104, 1094
AvaII	GGWCC	1 cut(s)	157
BaeGI	GKGCMC	1 cut(s)	1274
BanI	GGYRCC	1 cut(s)	645
BanII	GRGCYC	2 cut(s)	37, 811
BbsI	GAAGAC	2 cut(s)	965, 1004
Bbv12I	GWGCWC	1 cut(s)	811
BbvI	GCAGC	2 cut(s)	43, 175
BccI	CCATC	2 cut(s)	5, 355
BciT130I	CCWGG	5 cut(s)	161, 486, 542, 990, 1104
BciVI	GTATCC	2 cut(s)	492, 1110
BcnI	CCSGG	1 cut(s)	596
BcoDI	GTCTC	2 cut(s)	71, 1209
BfaI	CTAG	1 cut(s)	1008
BfmI	CTRYAG	1 cut(s)	331
BfoI	RGCGCY	1 cut(s)	148
BfuI	GTATCC	2 cut(s)	492, 1110
BisI	GCNGC	2 cut(s)	57, 189
BlsI	GCNGC	2 cut(s)	58, 190
Bme1390I	CCNGG	6 cut(s)	161, 486, 542, 596, 990, 1104
Bme18I	GGWCC	1 cut(s)	157
BmeRI	GACNNNNNGTC	1 cut(s)	1008
BmeT110I	CYCGRG	2 cut(s)	104, 1094
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	647, 705
BmrFI	CCNGG	6 cut(s)	161, 486, 542, 596, 990, 1104
BmrI	ACTGGG	1 cut(s)	975
BmsI	GCATC	4 cut(s)	579, 706, 994, 1390
BmuI	ACTGGG	1 cut(s)	975
BpiI	GAAGAC	2 cut(s)	965, 1004
BpmI	CTGGAG	3 cut(s)	95, 524, 890
Bpu14I	TTCGAA	2 cut(s)	854, 1170
BpuEI	CTTGAG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	596
BsaBI	GATNNNNATC	1 cut(s)	888
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	5 cut(s)	81, 485, 595, 1103, 1112
BsaXI	ACNNNNNCTCC	2 cut(s)	461, 491
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	4 cut(s)	714, 970, 986, 1255
Bse8I	GATNNNNATC	1 cut(s)	888
BseBI	CCWGG	5 cut(s)	161, 486, 542, 990, 1104
BseDI	CCNNGG	5 cut(s)	81, 485, 595, 1103, 1112
BseGI	GGATG	3 cut(s)	633, 985, 1420
BseJI	GATNNNNATC	1 cut(s)	888
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	3 cut(s)	52, 328, 492
BseNI	ACTGG	4 cut(s)	714, 970, 986, 1255
BseRI	GAGGAG	4 cut(s)	194, 1358, 1421, 1424
BseSI	GKGCMC	1 cut(s)	1274
BseXI	GCAGC	2 cut(s)	43, 175
BsgI	GTGCAG	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	645
BsiHKAI	GWGCWC	1 cut(s)	811
BsiHKCI	CYCGRG	2 cut(s)	104, 1094
BsiSI	CCGG	2 cut(s)	595, 1364
BslFI	GGGAC	2 cut(s)	478, 982
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	2 cut(s)	71, 1209
BsmFI	GGGAC	2 cut(s)	478, 982
BsmI	GAATGC	1 cut(s)	1048
Bso31I	GGTCTC	1 cut(s)	71
BsoBI	CYCGRG	2 cut(s)	104, 1094
Bsp119I	TTCGAA	2 cut(s)	854, 1170
Bsp1286I	GDGCHC	3 cut(s)	37, 811, 1274
BspACI	CCGC	5 cut(s)	44, 583, 638, 1267, 1403
BspCNI	CTCAG	3 cut(s)	51, 327, 493
BspHI	TCATGA	1 cut(s)	1138
BspLI	GGNNCC	2 cut(s)	647, 705
BspPI	GGATC	4 cut(s)	57, 878, 1191, 1424
BspT104I	TTCGAA	2 cut(s)	854, 1170
BspT107I	GGYRCC	1 cut(s)	645
BspTNI	GGTCTC	1 cut(s)	71
BsrBI	CCGCTC	1 cut(s)	1267
BsrI	ACTGG	4 cut(s)	714, 970, 986, 1255
BssECI	CCNNGG	5 cut(s)	81, 485, 595, 1103, 1112
BssT1I	CCWWGG	2 cut(s)	81, 1112
Bst2UI	CCWGG	5 cut(s)	161, 486, 542, 990, 1104
Bst4CI	ACNGT	4 cut(s)	509, 910, 944, 1383
BstBI	TTCGAA	2 cut(s)	854, 1170
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	4 cut(s)	38, 314, 501, 1371
BstF5I	GGATG	3 cut(s)	633, 985, 1420
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	2 cut(s)	120, 147
BstMAI	GTCTC	2 cut(s)	71, 1209
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 115, 197, 589, 703, 1030
BstNI	CCWGG	5 cut(s)	161, 486, 542, 990, 1104
BstSCI	CCNGG	6 cut(s)	159, 484, 540, 594, 988, 1102
BstSFI	CTRYAG	1 cut(s)	331
BstSLI	GKGCMC	1 cut(s)	1274
BstV1I	GCAGC	2 cut(s)	43, 175
BstV2I	GAAGAC	2 cut(s)	965, 1004
BstX2I	RGATCY	2 cut(s)	1183, 1429
BstXI	CCANNNNNNTGG	1 cut(s)	656
BstYI	RGATCY	2 cut(s)	1183, 1429
BsuI	GTATCC	2 cut(s)	492, 1110
BtgZI	GCGATG	1 cut(s)	30
BtsCI	GGATG	3 cut(s)	633, 985, 1420
BtsIMutI	CAGTG	7 cut(s)	46, 191, 248, 322, 707, 906, 1248
Cac8I	GCNNGC	1 cut(s)	270
CciI	TCATGA	1 cut(s)	1138
CfoI	GCGC	2 cut(s)	120, 147
Cfr13I	GGNCC	1 cut(s)	157
CseI	GACGC	1 cut(s)	1265
CviAII	CATG	4 cut(s)	290, 424, 1139, 1232
DdeI	CTNAG	4 cut(s)	38, 314, 501, 1371
DraI	TTTAAA	2 cut(s)	901, 1308
DraIII	CACNNNGTG	1 cut(s)	652
DriI	GACNNNNNGTC	1 cut(s)	1008
Eam1105I	GACNNNNNGTC	1 cut(s)	1008
Ecl136II	GAGCTC	1 cut(s)	809
Eco130I	CCWWGG	2 cut(s)	81, 1112
Eco24I	GRGCYC	2 cut(s)	37, 811
Eco31I	GGTCTC	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	809
Eco57I	CTGAAG	3 cut(s)	131, 272, 1037
Eco88I	CYCGRG	2 cut(s)	104, 1094
EcoICRI	GAGCTC	1 cut(s)	809
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRI	GAATTC	2 cut(s)	667, 1049
EcoRII	CCWGG	5 cut(s)	159, 484, 540, 988, 1102
EcoRV	GATATC	1 cut(s)	322
EcoT14I	CCWWGG	2 cut(s)	81, 1112
EcoT38I	GRGCYC	2 cut(s)	37, 811
ErhI	CCWWGG	2 cut(s)	81, 1112
FaeI	CATG	4 cut(s)	293, 427, 1142, 1235
FaqI	GGGAC	2 cut(s)	478, 982
FatI	CATG	4 cut(s)	289, 423, 1138, 1231
FauI	CCCGC	3 cut(s)	576, 645, 1260
FauNDI	CATATG	1 cut(s)	930
FblI	GTMKAC	1 cut(s)	846
Fnu4HI	GCNGC	2 cut(s)	57, 189
FokI	GGATG	3 cut(s)	620, 972, 1427
FriOI	GRGCYC	2 cut(s)	37, 811
Fsp4HI	GCNGC	2 cut(s)	57, 189
FspBI	CTAG	1 cut(s)	1008
GlaI	GCGC	2 cut(s)	119, 146
GluI	GCNGC	2 cut(s)	57, 189
GsuI	CTGGAG	3 cut(s)	95, 524, 890
HaeII	RGCGCY	1 cut(s)	148
HapII	CCGG	2 cut(s)	595, 1364
HgaI	GACGC	1 cut(s)	1265
HhaI	GCGC	2 cut(s)	120, 147
Hin1II	CATG	4 cut(s)	293, 427, 1142, 1235
Hin6I	GCGC	2 cut(s)	118, 145
HinP1I	GCGC	2 cut(s)	118, 145
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	4 cut(s)	300, 761, 997, 1069
HinfI	GANTC	4 cut(s)	98, 354, 1118, 1221
HpaI	GTTAAC	1 cut(s)	88
HpaII	CCGG	2 cut(s)	595, 1364
HphI	GGTGA	3 cut(s)	93, 469, 1265
Hpy166II	GTNNAC	2 cut(s)	88, 847
Hpy188I	TCNGA	5 cut(s)	759, 799, 813, 1017, 1330
Hpy8I	GTNNAC	2 cut(s)	88, 847
HpyAV	CCTTC	4 cut(s)	218, 448, 740, 850
HpyCH4III	ACNGT	4 cut(s)	509, 910, 944, 1383
HpyCH4IV	ACGT	1 cut(s)	574
HpyCH4V	TGCA	4 cut(s)	191, 572, 592, 1235
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 115, 197, 589, 703, 1030
HpyF3I	CTNAG	4 cut(s)	38, 314, 501, 1371
HpySE526I	ACGT	1 cut(s)	574
Hsp92II	CATG	4 cut(s)	293, 427, 1142, 1235
HspAI	GCGC	2 cut(s)	118, 145
KspAI	GTTAAC	1 cut(s)	88
LmnI	GCTCC	2 cut(s)	703, 806
Lsp1109I	GCAGC	2 cut(s)	43, 175
LweI	GCATC	4 cut(s)	579, 706, 994, 1390
MaeI	CTAG	1 cut(s)	1008
MaeII	ACGT	1 cut(s)	574
MaeIII	GTNAC	4 cut(s)	509, 787, 938, 1253
MbiI	CCGCTC	1 cut(s)	1267
MflI	RGATCY	2 cut(s)	1183, 1429
MhlI	GDGCHC	3 cut(s)	37, 811, 1274
MlyI	GAGTC	1 cut(s)	1230
MmeI	TCCRAC	1 cut(s)	723
MroXI	GAANNNNTTC	2 cut(s)	212, 860
MseI	TTAA	6 cut(s)	66, 87, 375, 900, 1086, 1307
MspA1I	CMGCKG	1 cut(s)	640
MspI	CCGG	2 cut(s)	595, 1364
MspR9I	CCNGG	6 cut(s)	161, 486, 542, 596, 990, 1104
Mva1269I	GAATGC	1 cut(s)	1048
MvaI	CCWGG	5 cut(s)	161, 486, 542, 990, 1104
MwoI	GCNNNNNNNGC	6 cut(s)	41, 115, 197, 589, 703, 1030
NciI	CCSGG	1 cut(s)	596
NdeI	CATATG	1 cut(s)	930
NlaIII	CATG	4 cut(s)	293, 427, 1142, 1235
NlaIV	GGNNCC	2 cut(s)	647, 705
NmuCI	GTSAC	4 cut(s)	509, 787, 938, 1253
NspV	TTCGAA	2 cut(s)	854, 1170
PagI	TCATGA	1 cut(s)	1138
PctI	GAATGC	1 cut(s)	1048
PdmI	GAANNNNTTC	2 cut(s)	212, 860
PfeI	GAWTC	3 cut(s)	98, 354, 1118
PflFI	GACNNNGTC	1 cut(s)	1220
PkrI	GCNGC	2 cut(s)	58, 190
PleI	GAGTC	1 cut(s)	1229
PpsI	GAGTC	1 cut(s)	1229
PpuMI	RGGWCCY	1 cut(s)	157
PsiI	TTATAA	1 cut(s)	558
Psp124BI	GAGCTC	1 cut(s)	811
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	5 cut(s)	159, 484, 540, 988, 1102
PspGI	CCWGG	5 cut(s)	159, 484, 540, 988, 1102
PspN4I	GGNNCC	2 cut(s)	647, 705
PspPI	GGNCC	1 cut(s)	157
PspPPI	RGGWCCY	1 cut(s)	157
PsuI	RGATCY	2 cut(s)	1183, 1429
PsyI	GACNNNGTC	1 cut(s)	1220
SacI	GAGCTC	1 cut(s)	811
SaqAI	TTAA	6 cut(s)	66, 87, 375, 900, 1086, 1307
SatI	GCNGC	2 cut(s)	57, 189
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	1230
ScrFI	CCNGG	6 cut(s)	161, 486, 542, 596, 990, 1104
SduI	GDGCHC	3 cut(s)	37, 811, 1274
SfaNI	GCATC	4 cut(s)	579, 706, 994, 1390
SfcI	CTRYAG	1 cut(s)	331
SfuI	TTCGAA	2 cut(s)	854, 1170
SinI	GGWCC	1 cut(s)	157
SmiI	ATTTAAAT	1 cut(s)	1308
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SsiI	CCGC	5 cut(s)	44, 583, 638, 1267, 1403
SspI	AATATT	2 cut(s)	566, 720
SspMI	CTAG	1 cut(s)	1008
SstI	GAGCTC	1 cut(s)	811
StyD4I	CCNGG	6 cut(s)	159, 484, 540, 594, 988, 1102
StyI	CCWWGG	2 cut(s)	81, 1112
SwaI	ATTTAAAT	1 cut(s)	1308
TaaI	ACNGT	4 cut(s)	509, 910, 944, 1383
TaiI	ACGT	1 cut(s)	577
TaqI	TCGA	5 cut(s)	622, 854, 1170, 1213, 1386
TfiI	GAWTC	3 cut(s)	98, 354, 1118
Tru1I	TTAA	6 cut(s)	66, 87, 375, 900, 1086, 1307
Tru9I	TTAA	6 cut(s)	66, 87, 375, 900, 1086, 1307
TscAI	CASTG	7 cut(s)	46, 198, 255, 322, 714, 913, 1255
TseFI	GTSAC	4 cut(s)	509, 787, 938, 1253
TseI	GCWGC	2 cut(s)	56, 188
Tsp45I	GTSAC	4 cut(s)	509, 787, 938, 1253
TspDTI	ATGAA	8 cut(s)	33, 276, 309, 669, 1110, 1166, 1209, 1431
TspGWI	ACGGA	3 cut(s)	482, 705, 819
TspRI	CASTG	7 cut(s)	46, 198, 255, 322, 714, 913, 1255
Tth111I	GACNNNGTC	1 cut(s)	1220
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	6 cut(s)	27, 170, 397, 667, 1049, 1418
XmiI	GTMKAC	1 cut(s)	846
XmnI	GAANNNNTTC	2 cut(s)	212, 860
XspI	CTAG	1 cut(s)	1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.