Rh2CG365800

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0016369
Physical Location & Seq
Forward (+)
49633150 .. 49637980
4831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG365800.1

Sequence Viewer

Length: 861 bp
ATGATCAACTACAGAGATAAACTCGAACGCAGTGTGTCTCTCATTCCGGCAGCCGCTGCTCTCAGTGCGGAGGATCGTGCTGCTCTTGTTAAAGCTCTGGAGAGATATGAGATTGTTAATGCCACAGAAGAGAAAGGAGTGCCTTACTTTTGGGTTACTGCAATGAAGAATGATGAAGTACTTGGTCAGAAGGTCACAAAGTCTGATGACGGAGCTCTCAAATATCTCAAAGAGATCAAGTGGTGTAGGATAGACAATTCGAAGGGGTTCAAGCTGGAGTTCTTCTTTGATCCAAATCCATATTTTAAAAACACTGTCCTGACAAAAGCATATCATATGAGTAGTGACAGTCAAATGTTAGAGAAGACAACTGGGACAAACATCAACTGGCATCCTGGCAAAAGCTTGACACCTAGGCCGTACCCAATTGATATTTGGTTGTTGGCTGCAAGAATTGAAGAGTTGGAGATAGAACCAATTCAATTCCAGCAAAGCTTTTTCAACTTTTTTCACACTCCCGAGTATCCTGGGTTTCCTTGGGATTCATCAACTTATACACATCATGATAATTTCCAAAAAATTGAAGATCAATTCGAAGTTCAGAGGGATCTGGATTATGAAGTTGGTAAAACTATTCGAGACAGGGTCATTCCTCATGCAGTATCACTTTTCACTGGGGAAGCTGTTGAGCGGGGCACTTATTTTGAAGATTTAGATGATGATGATGATTTAAATGATGATGATTATTATTCTGATGATGATGATGAGGAGGGGGAGGCTGTTGAGCAGGACACAAAGTTTAGACTGTTCGATAATGATGATGATGCCGAGGAGGAGGATGAATTTGAGGAAGATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

286

Amino Acids

33.39

Weight (kDa)

4.32

Isoelectric Point (pI)

31.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 34 - 227 1.8e-45 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g30051 FvH4_6g30060 FvH4_6g30063
rosa_chinensis RchiOBHm_Chr2g0136101
rosa_laevigata RLG00000019503
rosa_multiflora Rmu_sc0002070.1_g000009 Rmu_sc0002986.1_g000017
rosa_roxburghii Rroxscaffold_2G00108490
rosa_rugosa Rorug02G0328000 Rorug02G0328100
rosa_samantha Rh2AG379800 Rh2BG386600 Rh2CG365800 Rh2DG402700
rosa_wichuraiana Rw2G030960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 691
AciI CCGC 3 cut(s) 54, 68, 691
AclWI GGATC 4 cut(s) 81, 284, 615, 848
AcsI RAATTY 1 cut(s) 842
AfaI GTAC 2 cut(s) 180, 422
AgsI TTSAA 6 cut(s) 271, 458, 482, 502, 584, 707
AjnI CCWGG 2 cut(s) 394, 526
AluBI AGCT 6 cut(s) 95, 215, 274, 405, 495, 683
AluI AGCT 6 cut(s) 95, 215, 274, 405, 495, 683
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 2 cut(s) 42, 633
AlwI GGATC 4 cut(s) 81, 284, 615, 848
AlwNI CAGNNNCTG 1 cut(s) 56
Ama87I CYCGRG 1 cut(s) 518
AoxI GGCC 1 cut(s) 416
ApeKI GCWGC 4 cut(s) 50, 56, 80, 446
ApoI RAATTY 1 cut(s) 842
Asp700I GAANNNNTTC 2 cut(s) 266, 477
AspA2I CCTAGG 1 cut(s) 413
AsuII TTCGAA 2 cut(s) 260, 594
AvaI CYCGRG 1 cut(s) 518
AvrII CCTAGG 1 cut(s) 413
BaeGI GKGCMC 1 cut(s) 698
BanII GRGCYC 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 371
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 4 cut(s) 43, 62, 67, 433
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 2 cut(s) 396, 528
BciVI GTATCC 1 cut(s) 534
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 2 cut(s) 42, 633
BfaI CTAG 1 cut(s) 414
BfmI CTRYAG 1 cut(s) 10
BfuI GTATCC 1 cut(s) 534
BisI GCNGC 5 cut(s) 51, 54, 57, 81, 447
BlnI CCTAGG 1 cut(s) 413
BlsI GCNGC 5 cut(s) 52, 55, 58, 82, 448
BmcAI AGTACT 1 cut(s) 180
Bme1390I CCNGG 2 cut(s) 396, 528
BmeT110I CYCGRG 1 cut(s) 518
BmrFI CCNGG 2 cut(s) 396, 528
BmrI ACTGGG 2 cut(s) 381, 684
BmsI GCATC 2 cut(s) 400, 814
BmuI ACTGGG 2 cut(s) 381, 684
BpiI GAAGAC 1 cut(s) 371
BplI GAGNNNNNCTC 1 cut(s) 38
BpmI CTGGAG 2 cut(s) 119, 296
Bpu14I TTCGAA 2 cut(s) 260, 594
BsaBI GATNNNNATC 1 cut(s) 294
BsaJI CCNNGG 4 cut(s) 413, 527, 536, 828
Bse1I ACTGG 3 cut(s) 376, 392, 679
Bse3DI GCAATG 1 cut(s) 168
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 2 cut(s) 396, 528
BseDI CCNNGG 4 cut(s) 413, 527, 536, 828
BseGI GGATG 2 cut(s) 391, 844
BseJI GATNNNNATC 1 cut(s) 294
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 76
BseNI ACTGG 3 cut(s) 376, 392, 679
BseRI GAGGAG 3 cut(s) 782, 845, 848
BseSI GKGCMC 1 cut(s) 698
BseXI GCAGC 4 cut(s) 43, 62, 67, 433
BshFI GGCC 1 cut(s) 418
BsiHKAI GWGCWC 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 518
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 388
BsmAI GTCTC 2 cut(s) 42, 633
BsmFI GGGAC 1 cut(s) 388
BsnI GGCC 1 cut(s) 418
BsoBI CYCGRG 1 cut(s) 518
Bsp119I TTCGAA 2 cut(s) 260, 594
Bsp1286I GDGCHC 2 cut(s) 217, 698
Bsp143I GATC 7 cut(s) 3, 73, 234, 289, 586, 607, 853
BspACI CCGC 3 cut(s) 54, 68, 691
BspANI GGCC 1 cut(s) 418
BspCNI CTCAG 1 cut(s) 75
BspHI TCATGA 1 cut(s) 562
BspPI GGATC 4 cut(s) 81, 284, 615, 848
BspT104I TTCGAA 2 cut(s) 260, 594
BsrBI CCGCTC 1 cut(s) 691
BsrDI GCAATG 1 cut(s) 168
BsrI ACTGG 3 cut(s) 376, 392, 679
BssECI CCNNGG 4 cut(s) 413, 527, 536, 828
BssMI GATC 7 cut(s) 3, 73, 234, 289, 586, 607, 853
BssT1I CCWWGG 2 cut(s) 413, 536
Bst2UI CCWGG 2 cut(s) 396, 528
Bst4CI ACNGT 3 cut(s) 316, 350, 807
Bst6I CTCTTC 2 cut(s) 123, 453
BstAPI GCANNNNNTGC 1 cut(s) 56
BstBI TTCGAA 2 cut(s) 260, 594
BstDEI CTNAG 1 cut(s) 62
BstF5I GGATG 2 cut(s) 391, 844
BstKTI GATC 7 cut(s) 6, 76, 237, 292, 589, 610, 856
BstMAI GTCTC 2 cut(s) 42, 633
BstMBI GATC 7 cut(s) 3, 73, 234, 289, 586, 607, 853
BstMWI GCNNNNNNNGC 2 cut(s) 56, 65
BstNI CCWGG 2 cut(s) 396, 528
BstSCI CCNGG 2 cut(s) 394, 526
BstSFI CTRYAG 1 cut(s) 10
BstSLI GKGCMC 1 cut(s) 698
BstV1I GCAGC 4 cut(s) 43, 62, 67, 433
BstV2I GAAGAC 1 cut(s) 371
BstX2I RGATCY 2 cut(s) 607, 853
BstYI RGATCY 2 cut(s) 607, 853
BsuI GTATCC 1 cut(s) 534
BsuRI GGCC 1 cut(s) 418
BtsCI GGATG 2 cut(s) 391, 844
BtsI GCAGTG 1 cut(s) 37
BtsIMutI CAGTG 4 cut(s) 37, 70, 312, 672
CaiI CAGNNNCTG 1 cut(s) 56
CciI TCATGA 1 cut(s) 562
Csp6I GTAC 2 cut(s) 179, 421
CviAII CATG 2 cut(s) 563, 656
CviQI GTAC 2 cut(s) 179, 421
DdeI CTNAG 1 cut(s) 62
DpnI GATC 7 cut(s) 5, 75, 236, 291, 588, 609, 855
DpnII GATC 7 cut(s) 3, 73, 234, 289, 586, 607, 853
DraI TTTAAA 2 cut(s) 307, 732
Eam1104I CTCTTC 2 cut(s) 123, 453
EarI CTCTTC 2 cut(s) 123, 453
Ecl136II GAGCTC 1 cut(s) 215
Eco130I CCWWGG 2 cut(s) 413, 536
Eco24I GRGCYC 1 cut(s) 217
Eco53kI GAGCTC 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 518
EcoICRI GAGCTC 1 cut(s) 215
EcoRII CCWGG 2 cut(s) 394, 526
EcoT14I CCWWGG 2 cut(s) 413, 536
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 2 cut(s) 413, 536
FaeI CATG 2 cut(s) 566, 659
FaiI YATR 9 cut(s) 108, 301, 331, 336, 338, 555, 564, 618, 657
FaqI GGGAC 1 cut(s) 388
FatI CATG 2 cut(s) 562, 655
FauI CCCGC 1 cut(s) 684
FauNDI CATATG 1 cut(s) 336
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 5 cut(s) 51, 54, 57, 81, 447
FokI GGATG 2 cut(s) 378, 851
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 5 cut(s) 51, 54, 57, 81, 447
FspBI CTAG 1 cut(s) 414
GluI GCNGC 5 cut(s) 51, 54, 57, 81, 447
GsuI CTGGAG 2 cut(s) 119, 296
HaeIII GGCC 1 cut(s) 418
HapII CCGG 1 cut(s) 47
Hin1II CATG 2 cut(s) 566, 659
HindIII AAGCTT 2 cut(s) 403, 493
HinfI GANTC 1 cut(s) 542
HpaII CCGG 1 cut(s) 47
Hpy188I TCNGA 4 cut(s) 189, 205, 603, 754
Hpy188III TCNNGA 6 cut(s) 98, 319, 518, 563, 611, 638
HpyAV CCTTC 2 cut(s) 184, 256
HpyCH4III ACNGT 3 cut(s) 316, 350, 807
HpyCH4V TGCA 3 cut(s) 161, 449, 659
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 65
HpyF3I CTNAG 1 cut(s) 62
Hsp92II CATG 2 cut(s) 566, 659
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 7 cut(s) 3, 73, 234, 289, 586, 607, 853
LmnI GCTCC 1 cut(s) 212
Lsp1109I GCAGC 4 cut(s) 43, 62, 67, 433
LweI GCATC 2 cut(s) 400, 814
MaeI CTAG 1 cut(s) 414
MaeIII GTNAC 3 cut(s) 154, 193, 344
MalI GATC 7 cut(s) 5, 75, 236, 291, 588, 609, 855
MbiI CCGCTC 1 cut(s) 691
MboI GATC 7 cut(s) 3, 73, 234, 289, 586, 607, 853
MboII GAAGA 7 cut(s) 140, 178, 274, 376, 470, 596, 719
MfeI CAATTG 1 cut(s) 426
MflI RGATCY 2 cut(s) 607, 853
MhlI GDGCHC 2 cut(s) 217, 698
MluCI AATT 9 cut(s) 256, 426, 453, 477, 482, 568, 579, 590, 842
MmeI TCCRAC 1 cut(s) 444
MroXI GAANNNNTTC 2 cut(s) 266, 477
MseI TTAA 4 cut(s) 90, 117, 306, 731
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 396, 528
MunI CAATTG 1 cut(s) 426
MvaI CCWGG 2 cut(s) 396, 528
MwoI GCNNNNNNNGC 2 cut(s) 56, 65
NdeI CATATG 1 cut(s) 336
NdeII GATC 7 cut(s) 3, 73, 234, 289, 586, 607, 853
NlaIII CATG 2 cut(s) 566, 659
NmeAIII GCCGAG 1 cut(s) 853
NmuCI GTSAC 2 cut(s) 193, 344
NspV TTCGAA 2 cut(s) 260, 594
PagI TCATGA 1 cut(s) 562
PdmI GAANNNNTTC 2 cut(s) 266, 477
PfeI GAWTC 1 cut(s) 542
PflFI GACNNNGTC 1 cut(s) 644
PkrI GCNGC 5 cut(s) 52, 55, 58, 82, 448
Psp124BI GAGCTC 1 cut(s) 217
Psp6I CCWGG 2 cut(s) 394, 526
PspGI CCWGG 2 cut(s) 394, 526
PstNI CAGNNNCTG 1 cut(s) 56
PsuI RGATCY 2 cut(s) 607, 853
PsyI GACNNNGTC 1 cut(s) 644
RsaI GTAC 2 cut(s) 180, 422
RsaNI GTAC 2 cut(s) 179, 421
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 4 cut(s) 90, 117, 306, 731
SatI GCNGC 5 cut(s) 51, 54, 57, 81, 447
Sau3AI GATC 7 cut(s) 3, 73, 234, 289, 586, 607, 853
ScaI AGTACT 1 cut(s) 180
ScrFI CCNGG 2 cut(s) 396, 528
SduI GDGCHC 2 cut(s) 217, 698
SetI ASST 8 cut(s) 97, 195, 217, 276, 407, 415, 497, 685
SfaNI GCATC 2 cut(s) 400, 814
SfcI CTRYAG 1 cut(s) 10
SfuI TTCGAA 2 cut(s) 260, 594
SmiI ATTTAAAT 1 cut(s) 732
Sse9I AATT 9 cut(s) 256, 426, 453, 477, 482, 568, 579, 590, 842
SsiI CCGC 3 cut(s) 54, 68, 691
SspMI CTAG 1 cut(s) 414
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 2 cut(s) 394, 526
StyI CCWWGG 2 cut(s) 413, 536
SwaI ATTTAAAT 1 cut(s) 732
TaaI ACNGT 3 cut(s) 316, 350, 807
TaqI TCGA 5 cut(s) 24, 260, 594, 637, 810
TasI AATT 9 cut(s) 256, 426, 453, 477, 482, 568, 579, 590, 842
TatI WGTACW 1 cut(s) 178
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 1 cut(s) 542
Tru1I TTAA 4 cut(s) 90, 117, 306, 731
Tru9I TTAA 4 cut(s) 90, 117, 306, 731
TscAI CASTG 4 cut(s) 37, 70, 319, 679
TseFI GTSAC 2 cut(s) 193, 344
TseI GCWGC 4 cut(s) 50, 56, 80, 446
Tsp45I GTSAC 2 cut(s) 193, 344
TspDTI ATGAA 5 cut(s) 179, 189, 534, 633, 855
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 4 cut(s) 37, 70, 319, 679
Tth111I GACNNNGTC 1 cut(s) 644
XapI RAATTY 1 cut(s) 842
XcmI CCANNNNNNNNNTGG 1 cut(s) 432
XmaJI CCTAGG 1 cut(s) 413
XmnI GAANNNNTTC 2 cut(s) 266, 477
XspI CTAG 1 cut(s) 414
ZrmI AGTACT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.