RLG00000019503

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016369
Physical Location & Seq
Forward (+)
52851852 .. 52855900
4049 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019503

Sequence Viewer

Length: 1308 bp
ATGATCAACTACAGAGATAAACTCGAACGCAGTGTGTCTCTCATTCCGGCAGCCGCTGCTCTCAGTGCGGAGGATCGTGCTGCTCTTGTTAAAGCTCTGGAGTTCTTCAGGGCCTCTCATTATTTTATATTGTTGTTCCTTACGAGTGTTTCTTATCGGTATCTCAGTGATATCAACTGCTGTAGGATAGGCAGTTCTAATGGATTCAAGATGGAGTTTATGTTTAATCCTAACCCCTACTTTGAAAATTCTGTATTGAAAAAGACATACCACATGACTGATGACAATAAGCCTATATTGGAGAAGGCGATTGGGACGGAGATCAAGTGGTATCCAGGGAAAATCTTGACTGAGAACTGTCACAGCTTCTTCAACTTCTTTCAACCTCTCCAGGTCTGTAAGGATTATAATAAATATTTTGCACGTTTGAGGTTTCATATGTTGAATTTGATTGTGCCTTTTTTTTTCCTTTTTCTTTCTCTCTCAAGGAAAAGATATGAGATTGTTAATGGTATAACTGAAGCTCAAGAAATGAAAAGTGAAACTGCAGTAGACCAAGGAGGTAAAGCCAGAGAAGGTACCTCTCAAAACCATTTTTCTGAGCTTTTTTTTGTTTTATTATGGAAGTATGATCTGCTGTTATCTGGACAGATTACAAAGTGTGATGACGGAGCTCTCAAATATCTCAAAGATATTAAGTGGTGTAGGATAGACAATTCGAAGGGGTTCAAGCTGGAGTTCTTCTTTGATCCAAATCCATATTTTAAAAACACTGTCCTGACAAAAGCATATCATATGACTAGTGACAGTCAACCAATGTTGGAGAAGACAATTGGGACAAACATCAACTGGCATCCTGGCAAAAGCTTGACACCTGGTCTTCTGAAGAAGCCAAGAAAGCGATCAAAGAATGCTAAATTCATAACCAAACAGCAAAGCTTTTTCAACTTTTTTAACACTCCCCAGTATCCTGGGTTTCCTTGGGATTCATCAACTTATGCATATCATGATAATTTCCAAAAAGTTGAAGAACAATTCGAAGTTCAGAGGGATCTGGACTATGAAGTTGGTAAAACTATTCGAGACAAGATCATTCCTCATGCAGTATCACTTTTCACTAGGGAAGCTGTTGAGCAGGGCACTTATTGTGAAGATTTAGATGATGATGATGATTTAAATGATGATGATTATTATTCTGATGATGATGAGGAGGAGGAGGAGGAGGCTGTTGAGCAGCACACTAAGTTTAGACTGCTCTATAATGATGATGATGAGGAGGAGGAGGATGAATTTGAGGAAGACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

436

Amino Acids

51.22

Weight (kDa)

5.04

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 53 - 118 7.6e-17 Nucleosome assembly protein (NAP)
NAP PF00956 134 - 375 6.6e-47 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g30051 FvH4_6g30060 FvH4_6g30063
rosa_chinensis RchiOBHm_Chr2g0136101
rosa_laevigata RLG00000019503
rosa_multiflora Rmu_sc0002070.1_g000009 Rmu_sc0002986.1_g000017
rosa_roxburghii Rroxscaffold_2G00108490
rosa_rugosa Rorug02G0328000 Rorug02G0328100
rosa_samantha Rh2AG379800 Rh2BG386600 Rh2CG365800 Rh2DG402700
rosa_wichuraiana Rw2G030960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
Acc65I GGTACC 1 cut(s) 578
AccB1I GGYRCC 1 cut(s) 578
AccI GTMKAC 1 cut(s) 552
AciI CCGC 2 cut(s) 54, 68
AclWI GGATC 3 cut(s) 81, 743, 1059
AcsI RAATTY 4 cut(s) 247, 445, 917, 1289
AcuI CTGAAG 3 cut(s) 91, 540, 905
AfaI GTAC 1 cut(s) 580
AgsI TTSAA 9 cut(s) 208, 245, 259, 373, 383, 445, 730, 946, 1028
AhdI GACNNNNNGTC 1 cut(s) 876
AhlI ACTAGT 1 cut(s) 800
AjnI CCWGG 5 cut(s) 334, 390, 856, 874, 970
AloI GAACNNNNNNTCC 2 cut(s) 178, 210
AluBI AGCT 9 cut(s) 95, 366, 524, 604, 674, 733, 867, 939, 1127
AluI AGCT 9 cut(s) 95, 366, 524, 604, 674, 733, 867, 939, 1127
Alw21I GWGCWC 1 cut(s) 676
Alw26I GTCTC 2 cut(s) 42, 1077
AlwI GGATC 3 cut(s) 81, 743, 1059
AlwNI CAGNNNCTG 1 cut(s) 56
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 4 cut(s) 50, 56, 80, 1234
ApoI RAATTY 4 cut(s) 247, 445, 917, 1289
Asp700I GAANNNNTTC 1 cut(s) 725
Asp718I GGTACC 1 cut(s) 578
AspS9I GGNCC 1 cut(s) 111
AsuII TTCGAA 2 cut(s) 719, 1038
BaeGI GKGCMC 1 cut(s) 1142
BanI GGYRCC 1 cut(s) 578
BanII GRGCYC 1 cut(s) 676
BbsI GAAGAC 2 cut(s) 833, 872
Bbv12I GWGCWC 1 cut(s) 676
BbvI GCAGC 4 cut(s) 43, 62, 67, 1246
BccI CCATC 1 cut(s) 205
BciT130I CCWGG 5 cut(s) 336, 392, 858, 876, 972
BciVI GTATCC 2 cut(s) 342, 978
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 2 cut(s) 42, 1077
BcuI ACTAGT 1 cut(s) 800
BfaI CTAG 2 cut(s) 801, 1119
BfmI CTRYAG 3 cut(s) 10, 181, 546
BfuI GTATCC 2 cut(s) 342, 978
BisI GCNGC 5 cut(s) 51, 54, 57, 81, 1235
BlsI GCNGC 5 cut(s) 52, 55, 58, 82, 1236
Bme1390I CCNGG 5 cut(s) 336, 392, 858, 876, 972
BmeRI GACNNNNNGTC 1 cut(s) 876
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 580
BmrFI CCNGG 5 cut(s) 336, 392, 858, 876, 972
BmrI ACTGGG 1 cut(s) 958
BmsI GCATC 1 cut(s) 862
BmuI ACTGGG 1 cut(s) 958
BpiI GAAGAC 2 cut(s) 833, 872
BplI GAGNNNNNCTC 1 cut(s) 38
BpmI CTGGAG 3 cut(s) 119, 374, 755
Bpu14I TTCGAA 2 cut(s) 719, 1038
BpuEI CTTGAG 2 cut(s) 469, 510
BsaBI GATNNNNATC 1 cut(s) 753
BsaJI CCNNGG 4 cut(s) 335, 556, 971, 980
BsaXI ACNNNNNCTCC 4 cut(s) 206, 236, 311, 341
Bse1I ACTGG 2 cut(s) 854, 964
Bse8I GATNNNNATC 1 cut(s) 753
BseBI CCWGG 5 cut(s) 336, 392, 858, 876, 972
BseDI CCNNGG 4 cut(s) 335, 556, 971, 980
BseGI GGATG 2 cut(s) 853, 1291
BseJI GATNNNNATC 1 cut(s) 753
BseMII CTCAG 4 cut(s) 76, 178, 342, 591
BseNI ACTGG 2 cut(s) 854, 964
BseRI GAGGAG 8 cut(s) 1223, 1226, 1229, 1232, 1235, 1289, 1292, 1295
BseSI GKGCMC 1 cut(s) 1142
BseXI GCAGC 4 cut(s) 43, 62, 67, 1246
BshFI GGCC 1 cut(s) 113
BshNI GGYRCC 1 cut(s) 578
BsiHKAI GWGCWC 1 cut(s) 676
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 2 cut(s) 328, 850
BsmAI GTCTC 2 cut(s) 42, 1077
BsmFI GGGAC 2 cut(s) 328, 850
BsmI GAATGC 1 cut(s) 916
BsnI GGCC 1 cut(s) 113
Bsp119I TTCGAA 2 cut(s) 719, 1038
Bsp1286I GDGCHC 2 cut(s) 676, 1142
Bsp143I GATC 8 cut(s) 3, 73, 321, 631, 748, 902, 1051, 1089
BspACI CCGC 2 cut(s) 54, 68
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 4 cut(s) 75, 177, 343, 592
BspHI TCATGA 1 cut(s) 1006
BspLI GGNNCC 1 cut(s) 580
BspMAI CTGCAG 1 cut(s) 550
BspPI GGATC 3 cut(s) 81, 743, 1059
BspT104I TTCGAA 2 cut(s) 719, 1038
BspT107I GGYRCC 1 cut(s) 578
BsrI ACTGG 2 cut(s) 854, 964
BssECI CCNNGG 4 cut(s) 335, 556, 971, 980
BssMI GATC 8 cut(s) 3, 73, 321, 631, 748, 902, 1051, 1089
BssT1I CCWWGG 2 cut(s) 556, 980
Bst2UI CCWGG 5 cut(s) 336, 392, 858, 876, 972
Bst4CI ACNGT 3 cut(s) 359, 775, 809
BstAPI GCANNNNNTGC 1 cut(s) 56
BstBI TTCGAA 2 cut(s) 719, 1038
BstDEI CTNAG 5 cut(s) 62, 164, 351, 600, 1242
BstF5I GGATG 2 cut(s) 853, 1291
BstKTI GATC 8 cut(s) 6, 76, 324, 634, 751, 905, 1054, 1092
BstMAI GTCTC 2 cut(s) 42, 1077
BstMBI GATC 8 cut(s) 3, 73, 321, 631, 748, 902, 1051, 1089
BstMWI GCNNNNNNNGC 3 cut(s) 56, 65, 898
BstNI CCWGG 5 cut(s) 336, 392, 858, 876, 972
BstSCI CCNGG 5 cut(s) 334, 390, 856, 874, 970
BstSFI CTRYAG 3 cut(s) 10, 181, 546
BstSLI GKGCMC 1 cut(s) 1142
BstV1I GCAGC 4 cut(s) 43, 62, 67, 1246
BstV2I GAAGAC 2 cut(s) 833, 872
BstX2I RGATCY 1 cut(s) 1051
BstXI CCANNNNNNTGG 1 cut(s) 971
BstYI RGATCY 1 cut(s) 1051
BsuI GTATCC 2 cut(s) 342, 978
BsuRI GGCC 1 cut(s) 113
BtsCI GGATG 2 cut(s) 853, 1291
BtsI GCAGTG 1 cut(s) 37
BtsIMutI CAGTG 4 cut(s) 37, 70, 172, 771
CaiI CAGNNNCTG 1 cut(s) 56
CciI TCATGA 1 cut(s) 1006
Cfr13I GGNCC 1 cut(s) 111
CsiI ACCWGGT 1 cut(s) 874
Csp6I GTAC 1 cut(s) 579
CviAII CATG 3 cut(s) 274, 1007, 1100
CviQI GTAC 1 cut(s) 579
DdeI CTNAG 5 cut(s) 62, 164, 351, 600, 1242
DpnI GATC 8 cut(s) 5, 75, 323, 633, 750, 904, 1053, 1091
DpnII GATC 8 cut(s) 3, 73, 321, 631, 748, 902, 1051, 1089
DraI TTTAAA 2 cut(s) 766, 1176
DriI GACNNNNNGTC 1 cut(s) 876
Eam1105I GACNNNNNGTC 1 cut(s) 876
Ecl136II GAGCTC 1 cut(s) 674
Eco130I CCWWGG 2 cut(s) 556, 980
Eco24I GRGCYC 1 cut(s) 676
Eco32I GATATC 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 674
Eco57I CTGAAG 3 cut(s) 91, 540, 905
EcoICRI GAGCTC 1 cut(s) 674
EcoO109I RGGNCCY 1 cut(s) 111
EcoRII CCWGG 5 cut(s) 334, 390, 856, 874, 970
EcoRV GATATC 1 cut(s) 172
EcoT14I CCWWGG 2 cut(s) 556, 980
EcoT22I ATGCAT 1 cut(s) 1003
EcoT38I GRGCYC 1 cut(s) 676
ErhI CCWWGG 2 cut(s) 556, 980
FaeI CATG 3 cut(s) 277, 1010, 1103
FaqI GGGAC 2 cut(s) 328, 850
FatI CATG 3 cut(s) 273, 1006, 1099
FauNDI CATATG 2 cut(s) 438, 795
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 552
Fnu4HI GCNGC 5 cut(s) 51, 54, 57, 81, 1235
FokI GGATG 2 cut(s) 840, 1298
FriOI GRGCYC 1 cut(s) 676
Fsp4HI GCNGC 5 cut(s) 51, 54, 57, 81, 1235
FspBI CTAG 2 cut(s) 801, 1119
GluI GCNGC 5 cut(s) 51, 54, 57, 81, 1235
GsuI CTGGAG 3 cut(s) 119, 374, 755
HaeIII GGCC 1 cut(s) 113
HapII CCGG 1 cut(s) 47
Hin1II CATG 3 cut(s) 277, 1010, 1103
HincII GTYRAC 1 cut(s) 812
HindII GTYRAC 1 cut(s) 812
HindIII AAGCTT 2 cut(s) 865, 937
HinfI GANTC 2 cut(s) 204, 986
HpaII CCGG 1 cut(s) 47
Hpy166II GTNNAC 2 cut(s) 553, 812
Hpy188I TCNGA 4 cut(s) 601, 885, 1047, 1198
Hpy188III TCNNGA 9 cut(s) 98, 208, 346, 527, 645, 778, 1007, 1055, 1082
Hpy8I GTNNAC 2 cut(s) 553, 812
HpyAV CCTTC 3 cut(s) 298, 569, 715
HpyCH4III ACNGT 3 cut(s) 359, 775, 809
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 4 cut(s) 422, 548, 1001, 1103
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 65, 898
HpyF3I CTNAG 5 cut(s) 62, 164, 351, 600, 1242
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 3 cut(s) 277, 1010, 1103
KpnI GGTACC 1 cut(s) 582
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 8 cut(s) 3, 73, 321, 631, 748, 902, 1051, 1089
LmnI GCTCC 1 cut(s) 671
Lsp1109I GCAGC 4 cut(s) 43, 62, 67, 1246
LweI GCATC 1 cut(s) 862
MabI ACCWGGT 1 cut(s) 874
MaeI CTAG 2 cut(s) 801, 1119
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 2 cut(s) 359, 803
MalI GATC 8 cut(s) 5, 75, 323, 633, 750, 904, 1053, 1091
MboI GATC 8 cut(s) 3, 73, 321, 631, 748, 902, 1051, 1089
MboII GAAGA 8 cut(s) 97, 361, 733, 838, 872, 898, 1040, 1163
MfeI CAATTG 1 cut(s) 831
MflI RGATCY 1 cut(s) 1051
MhlI GDGCHC 2 cut(s) 676, 1142
MluCI AATT 8 cut(s) 247, 445, 715, 831, 917, 1012, 1034, 1289
MmeI TCCRAC 1 cut(s) 801
Mph1103I ATGCAT 1 cut(s) 1003
MroXI GAANNNNTTC 1 cut(s) 725
MseI TTAA 7 cut(s) 90, 225, 507, 696, 765, 954, 1175
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 5 cut(s) 336, 392, 858, 876, 972
MunI CAATTG 1 cut(s) 831
Mva1269I GAATGC 1 cut(s) 916
MvaI CCWGG 5 cut(s) 336, 392, 858, 876, 972
MwoI GCNNNNNNNGC 3 cut(s) 56, 65, 898
NdeI CATATG 2 cut(s) 438, 795
NdeII GATC 8 cut(s) 3, 73, 321, 631, 748, 902, 1051, 1089
NlaIII CATG 3 cut(s) 277, 1010, 1103
NlaIV GGNNCC 1 cut(s) 580
NmuCI GTSAC 2 cut(s) 359, 803
NsiI ATGCAT 1 cut(s) 1003
NspV TTCGAA 2 cut(s) 719, 1038
PagI TCATGA 1 cut(s) 1006
PctI GAATGC 1 cut(s) 916
PdmI GAANNNNTTC 1 cut(s) 725
PfeI GAWTC 2 cut(s) 204, 986
PkrI GCNGC 5 cut(s) 52, 55, 58, 82, 1236
PsiI TTATAA 1 cut(s) 408
Psp124BI GAGCTC 1 cut(s) 676
Psp6I CCWGG 5 cut(s) 334, 390, 856, 874, 970
PspGI CCWGG 5 cut(s) 334, 390, 856, 874, 970
PspN4I GGNNCC 1 cut(s) 580
PspPI GGNCC 1 cut(s) 111
PstI CTGCAG 1 cut(s) 550
PstNI CAGNNNCTG 1 cut(s) 56
PsuI RGATCY 1 cut(s) 1051
RsaI GTAC 1 cut(s) 580
RsaNI GTAC 1 cut(s) 579
SacI GAGCTC 1 cut(s) 676
SaqAI TTAA 7 cut(s) 90, 225, 507, 696, 765, 954, 1175
SatI GCNGC 5 cut(s) 51, 54, 57, 81, 1235
Sau3AI GATC 8 cut(s) 3, 73, 321, 631, 748, 902, 1051, 1089
Sau96I GGNCC 1 cut(s) 111
ScrFI CCNGG 5 cut(s) 336, 392, 858, 876, 972
SduI GDGCHC 2 cut(s) 676, 1142
SexAI ACCWGGT 1 cut(s) 874
SfaNI GCATC 1 cut(s) 862
SfcI CTRYAG 3 cut(s) 10, 181, 546
SfuI TTCGAA 2 cut(s) 719, 1038
SmiI ATTTAAAT 1 cut(s) 1176
SmlI CTYRAG 2 cut(s) 484, 525
SmoI CTYRAG 2 cut(s) 484, 525
SpeI ACTAGT 1 cut(s) 800
Sse9I AATT 8 cut(s) 247, 445, 715, 831, 917, 1012, 1034, 1289
SsiI CCGC 2 cut(s) 54, 68
SspI AATATT 1 cut(s) 416
SspMI CTAG 2 cut(s) 801, 1119
SstI GAGCTC 1 cut(s) 676
StyD4I CCNGG 5 cut(s) 334, 390, 856, 874, 970
StyI CCWWGG 2 cut(s) 556, 980
SwaI ATTTAAAT 1 cut(s) 1176
TaaI ACNGT 3 cut(s) 359, 775, 809
TaiI ACGT 1 cut(s) 427
TaqI TCGA 4 cut(s) 24, 719, 1038, 1081
TasI AATT 8 cut(s) 247, 445, 715, 831, 917, 1012, 1034, 1289
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 2 cut(s) 204, 986
Tru1I TTAA 7 cut(s) 90, 225, 507, 696, 765, 954, 1175
Tru9I TTAA 7 cut(s) 90, 225, 507, 696, 765, 954, 1175
TscAI CASTG 4 cut(s) 37, 70, 172, 778
TseFI GTSAC 2 cut(s) 359, 803
TseI GCWGC 4 cut(s) 50, 56, 80, 1234
Tsp45I GTSAC 2 cut(s) 359, 803
TspDTI ATGAA 6 cut(s) 425, 548, 910, 978, 1077, 1302
TspGWI ACGGA 2 cut(s) 332, 684
TspRI CASTG 4 cut(s) 37, 70, 172, 778
XapI RAATTY 4 cut(s) 247, 445, 917, 1289
XmiI GTMKAC 1 cut(s) 552
XmnI GAANNNNTTC 1 cut(s) 725
XspI CTAG 2 cut(s) 801, 1119
Zsp2I ATGCAT 1 cut(s) 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.