Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0016369

Physical Location & Seq

Genomic Coordinates Reverse (-)

40241452 .. 40241913

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0328100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGACTGAGAAGGCGGTGGCTATAGTGGGTGCTGCACTGGGGAAAATTCTGCATATGGATAAGATGGGGATTCGACGTGGGACGAAGGCTAGTGCCCGGATCACCCATGCGCTCACTGATCCCATCAAGCAGGCCTACCCTCCGCTAGTTTTCGATTTTGACGGAGGAGTTTCAGCAACACTCAGGTTCAAATATGAACGTGTGGTGGGATTCTGTAGGGTTTGTGGAATGTTAGAACACCCAAAGGAGGGCTGTGCTGGACCTCTGGATGTCTTTGCGGCGGTAGCTTTCATGGAGGGAAAGGGTGAACCTAACCCTAGCCCTTTGGCTTCAGGGCTCTCTCTTTTGTCTCATGGTGCAGGCCCGAGCCGGGTTTTTGGTGTGGGGAGTAGCTCGGGTGTAGGACAAGTTCCATTTATGCTCAAGCCATCCTCTTTGTTGGGTTCAATGTCAAGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

153

Amino Acids

15.99

Weight (kDa)

9.51

Isoelectric Point (pI)

31.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC_4	PF14392	51 - 85	7.3e-11	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016369)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30051 FvH4_6g30060 FvH4_6g30063
rosa_chinensis	RchiOBHm_Chr2g0136101
rosa_laevigata	RLG00000019503
rosa_multiflora	Rmu_sc0002070.1_g000009 Rmu_sc0002986.1_g000017
rosa_roxburghii	Rroxscaffold_2G00108490
rosa_rugosa	Rorug02G0328000 Rorug02G0328100
rosa_samantha	Rh2AG379800 Rh2BG386600 Rh2CG365800 Rh2DG402700
rosa_wichuraiana	Rw2G030960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	14, 143, 278, 281
AclWI	GGATC	2 cut(s)	107, 113
AcsI	RAATTY	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	315
AfiI	CCNNNNNNNGG	3 cut(s)	247, 248, 370
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	2 cut(s)	190, 447
AjiI	CACGTC	1 cut(s)	77
AluBI	AGCT	2 cut(s)	287, 393
AluI	AGCT	2 cut(s)	287, 393
Alw26I	GTCTC	1 cut(s)	354
AlwI	GGATC	2 cut(s)	107, 113
Ama87I	CYCGRG	2 cut(s)	364, 394
AoxI	GGCC	2 cut(s)	132, 361
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	45
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	2 cut(s)	260, 362
AsuC2I	CCSGG	2 cut(s)	97, 371
AsuHPI	GGTGA	2 cut(s)	94, 317
AvaI	CYCGRG	2 cut(s)	364, 394
AvaII	GGWCC	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	3 cut(s)	58, 131, 436
BcnI	CCSGG	2 cut(s)	97, 371
BcoDI	GTCTC	1 cut(s)	354
BfaI	CTAG	3 cut(s)	90, 146, 318
BfmI	CTRYAG	2 cut(s)	21, 214
BisI	GCNGC	2 cut(s)	33, 279
BlsI	GCNGC	2 cut(s)	34, 280
Bme1390I	CCNGG	2 cut(s)	97, 371
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	2 cut(s)	364, 394
BmgBI	CACGTC	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	260, 362
BmrFI	CCNGG	2 cut(s)	97, 371
BmrI	ACTGGG	1 cut(s)	47
BmuI	ACTGGG	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	407
BpuMI	CCSGG	2 cut(s)	97, 371
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 248, 370
Bse1I	ACTGG	1 cut(s)	42
BseGI	GGATG	2 cut(s)	274, 428
BseLI	CCNNNNNNNGG	3 cut(s)	247, 248, 370
BseMII	CTCAG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	42
BseRI	GAGGAG	1 cut(s)	180
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	19
BsgI	GTGCAG	2 cut(s)	18, 378
BshFI	GGCC	2 cut(s)	134, 363
BsiHKCI	CYCGRG	2 cut(s)	364, 394
BsiSI	CCGG	2 cut(s)	97, 370
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	3 cut(s)	247, 248, 370
BsmAI	GTCTC	1 cut(s)	354
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	134, 363
BsoBI	CYCGRG	2 cut(s)	364, 394
Bsp1286I	GDGCHC	2 cut(s)	97, 339
Bsp143I	GATC	2 cut(s)	99, 118
BspACI	CCGC	4 cut(s)	14, 143, 278, 281
BspANI	GGCC	2 cut(s)	134, 363
BspCNI	CTCAG	1 cut(s)	195
BspPI	GGATC	2 cut(s)	107, 113
BsrI	ACTGG	1 cut(s)	42
BssMI	GATC	2 cut(s)	99, 118
BstC8I	GCNNGC	2 cut(s)	132, 361
BstDEI	CTNAG	2 cut(s)	6, 182
BstF5I	GGATG	2 cut(s)	274, 428
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	2 cut(s)	102, 121
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	2 cut(s)	99, 118
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstSCI	CCNGG	2 cut(s)	95, 369
BstSFI	CTRYAG	2 cut(s)	21, 214
BstSLI	GKGCMC	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	19
BsuRI	GGCC	2 cut(s)	134, 363
BtrI	CACGTC	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	274, 428
BtsIMutI	CAGTG	2 cut(s)	35, 114
Cac8I	GCNNGC	2 cut(s)	132, 361
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	260, 362
CviAII	CATG	3 cut(s)	107, 292, 353
DdeI	CTNAG	2 cut(s)	6, 182
DpnI	GATC	2 cut(s)	101, 120
DpnII	GATC	2 cut(s)	99, 118
Eco147I	AGGCCT	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	315
Eco88I	CYCGRG	2 cut(s)	364, 394
EcoT38I	GRGCYC	1 cut(s)	339
FaeI	CATG	3 cut(s)	110, 295, 356
FaiI	YATR	8 cut(s)	23, 54, 56, 108, 195, 293, 354, 419
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	3 cut(s)	106, 291, 352
FauNDI	CATATG	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	33, 279
FokI	GGATG	2 cut(s)	281, 415
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	2 cut(s)	33, 279
FspBI	CTAG	3 cut(s)	90, 146, 318
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	2 cut(s)	33, 279
HaeIII	GGCC	2 cut(s)	134, 363
HapII	CCGG	2 cut(s)	97, 370
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	3 cut(s)	110, 295, 356
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	2 cut(s)	70, 210
HpaII	CCGG	2 cut(s)	97, 370
HphI	GGTGA	2 cut(s)	94, 317
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	1 cut(s)	308
Hpy99I	CGWCG	1 cut(s)	78
HpyAV	CCTTC	2 cut(s)	4, 79
HpyCH4IV	ACGT	2 cut(s)	76, 199
HpyCH4V	TGCA	3 cut(s)	35, 52, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	2 cut(s)	6, 182
HpySE526I	ACGT	2 cut(s)	76, 199
Hsp92II	CATG	3 cut(s)	110, 295, 356
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	99, 118
LpnPI	CCDG	9 cut(s)	23, 110, 116, 169, 243, 251, 318, 345, 383
Lsp1109I	GCAGC	1 cut(s)	19
MaeI	CTAG	3 cut(s)	90, 146, 318
MaeII	ACGT	2 cut(s)	76, 199
MalI	GATC	2 cut(s)	101, 120
MboI	GATC	2 cut(s)	99, 118
MhlI	GDGCHC	2 cut(s)	97, 339
MluCI	AATT	1 cut(s)	45
MnlI	CCTC	6 cut(s)	150, 158, 241, 273, 289, 442
MspI	CCGG	2 cut(s)	97, 370
MspR9I	CCNGG	2 cut(s)	97, 371
MwoI	GCNNNNNNNGC	1 cut(s)	284
NciI	CCSGG	2 cut(s)	97, 371
NdeI	CATATG	1 cut(s)	54
NdeII	GATC	2 cut(s)	99, 118
NlaIII	CATG	3 cut(s)	110, 295, 356
PceI	AGGCCT	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	70, 210
PkrI	GCNGC	2 cut(s)	34, 280
PspPI	GGNCC	2 cut(s)	260, 362
PsrI	GAACNNNNNNTAC	2 cut(s)	393, 425
SatI	GCNGC	2 cut(s)	33, 279
Sau3AI	GATC	2 cut(s)	99, 118
Sau96I	GGNCC	2 cut(s)	260, 362
ScrFI	CCNGG	2 cut(s)	97, 371
SduI	GDGCHC	2 cut(s)	97, 339
SetI	ASST	7 cut(s)	79, 188, 202, 265, 289, 313, 395
SfcI	CTRYAG	2 cut(s)	21, 214
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	1 cut(s)	45
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	4 cut(s)	14, 143, 278, 281
SspMI	CTAG	3 cut(s)	90, 146, 318
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	2 cut(s)	95, 369
TaiI	ACGT	2 cut(s)	79, 202
TaqI	TCGA	2 cut(s)	73, 153
TasI	AATT	1 cut(s)	45
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	2 cut(s)	70, 210
TscAI	CASTG	2 cut(s)	42, 121
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	210, 280
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	2 cut(s)	42, 121
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	1 cut(s)	45
XspI	CTAG	3 cut(s)	90, 146, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.