Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005863

Physical Location & Seq

Genomic Coordinates Forward (+)

29374313 .. 29380781

Gene Structure 6469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37290.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGAAGGCGGCAGCATCAGCAACCTTGAACCCTCCCACTGCTCTCTACCCATCACCCATTTCCCGCCATATCAACTTCCTGCCCCAACGGTTTCAACCTCGCCGACACAACTCCGGCAAAGGGTTGAAATTGTGCAGAAATGACTCTGTGCGGTCTGCTTGTAGTGTGACTTGTGCTGTCAATGGAGGTCAGGGTGGATATGTCTCTGCGTGGGATGAGAAACCGTATGAGTTTCTACCAAATGGGAAAAGAGCATACTTGGATGAACAAGACGTGGTTACGTTCCTTGATCCCCCCAAAGAGTTGATTCCTTTGGACTCGGCTTCTTATAATCCTGCTGCATATCTTTGGAAAAAAATTGATGATATTCCCCAAGAAAGACGTCGTCGGCTGCTGCGCTTGGTAGAGCCTAGGCTGATCTCAAGAGCTTGGGAGATAGCTGGCACACGATATGAAGAACCCAAGTTGATGAACAGAAGCTCATCTCAACTGTTATCTAATGAAGATGGTGTGTCTCTTGAATATTATAATTGCCGAACAAGTGGAGGACCAATGCCTATTTCTTGGATAAACTATTTCAAGACGGCAATTTTTGCTTGCAAGGATGGGAACGTATATGGACGATTTATTGGTGACACAATTCTTAATGGACTTGCAAATTCCTTTAGCCCATTGTACTTTGTAGTGAGACAGCTAAAGGAAGTAATGGCAACTGAACAACCTTGTGATCTAGCATATGAGTTTGGGGATGGGCAATTTGATCTCCATGAATACCCTGAGGGCTTTCCAAGACCAGTGAAACATCCGTATCCTTTCAACGATCAGGTGGTTGTCTATGTTCGTCATCTTGGACCAGGAGTGTCAGTAGGGCAAGCATGGCAAGAAGGAAAAGCATTACAACAAGTTCCACAAAAATTATGTGGCGACATTCTAATGGCGAAAGATTTTTCTACCGTTAGAGCAGATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

324

Amino Acids

36.43

Weight (kDa)

8.37

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73090 AT1G73090
fragaria_vesca	FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290
malus_domestica	MD09G1158700.v1.1
prunus_persica	Prupe.3G167100_v2.0.a1 Prupe.3G167100_v2.0.a1
pyrus_communis	pycom09g07730
rosa_chinensis	RchiOBHm_Chr1g0381181 RchiOBHm_Chr2g0150121
rosa_laevigata	RLG00000020468
rosa_multiflora	Rmu_sc0000156.1_g000009 Rmu_sc0009445.1_g000003
rosa_roxburghii	Rroxscaffold_2G00097430
rosa_rugosa	Rorug02G0419300
rosa_samantha	Rh1AG306600 Rh1CG035500 Rh2AG477900 Rh2BG490500 Rh2CG464100 Rh2DG499300 Rh4AG247100 Rh5DG267800
rosa_wichuraiana	Rw2G039010 Rw5G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	330, 528
AatII	GACGTC	1 cut(s)	385
AciI	CCGC	3 cut(s)	8, 64, 151
AclWI	GGATC	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	658
AcyI	GRCGYC	1 cut(s)	382
AfaI	GTAC	1 cut(s)	677
AfiI	CCNNNNNNNGG	1 cut(s)	120
AgsI	TTSAA	6 cut(s)	28, 95, 127, 521, 580, 817
AjiI	CACGTC	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	853
AjuI	GAANNNNNNNTTGG	2 cut(s)	544, 576
AluBI	AGCT	4 cut(s)	428, 440, 480, 694
AluI	AGCT	4 cut(s)	428, 440, 480, 694
Alw26I	GTCTC	3 cut(s)	208, 519, 682
AlwI	GGATC	1 cut(s)	284
ApeKI	GCWGC	4 cut(s)	11, 338, 391, 394
ApoI	RAATTY	1 cut(s)	658
AspA2I	CCTAGG	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	2 cut(s)	548, 851
AsuHPI	GGTGA	2 cut(s)	45, 644
AvaII	GGWCC	2 cut(s)	548, 851
AvrII	CCTAGG	1 cut(s)	410
AxyI	CCTNAGG	1 cut(s)	777
BaeI	ACNNNNGTAYC	2 cut(s)	791, 824
BbvI	GCAGC	4 cut(s)	23, 325, 378, 381
BccI	CCATC	4 cut(s)	58, 500, 599, 743
BceAI	ACGGC	1 cut(s)	600
BciT130I	CCWGG	1 cut(s)	855
BciVI	GTATCC	1 cut(s)	819
BcoDI	GTCTC	3 cut(s)	208, 519, 682
BfaI	CTAG	2 cut(s)	411, 731
BfuI	GTATCC	1 cut(s)	819
BisI	GCNGC	5 cut(s)	9, 12, 339, 392, 395
BlnI	CCTAGG	1 cut(s)	410
BlsI	GCNGC	5 cut(s)	10, 13, 340, 393, 396
Bme1390I	CCNGG	1 cut(s)	855
Bme18I	GGWCC	2 cut(s)	548, 851
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	548, 851
BmrFI	CCNGG	1 cut(s)	855
BmsI	GCATC	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	406
BsaHI	GRCGYC	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	410
BsaXI	ACNNNNNCTCC	2 cut(s)	849, 879
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	794
Bse21I	CCTNAGG	1 cut(s)	777
BseBI	CCWGG	1 cut(s)	855
BseDI	CCNNGG	1 cut(s)	410
BseGI	GGATG	5 cut(s)	220, 268, 610, 754, 802
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	768
BseNI	ACTGG	1 cut(s)	794
BseXI	GCAGC	4 cut(s)	23, 325, 378, 381
BsgI	GTGCAG	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmAI	GTCTC	3 cut(s)	208, 519, 682
Bsp143I	GATC	6 cut(s)	289, 417, 727, 760, 820, 964
BspACI	CCGC	3 cut(s)	8, 64, 151
BspCNI	CTCAG	1 cut(s)	769
BspPI	GGATC	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	794
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	6 cut(s)	289, 417, 727, 760, 820, 964
BssNI	GRCGYC	1 cut(s)	382
BssT1I	CCWWGG	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	855
Bst4CI	ACNGT	4 cut(s)	90, 225, 492, 955
BstACI	GRCGYC	1 cut(s)	382
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstC8I	GCNNGC	3 cut(s)	442, 598, 873
BstDEI	CTNAG	1 cut(s)	777
BstF5I	GGATG	5 cut(s)	220, 268, 610, 754, 802
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	6 cut(s)	292, 420, 730, 763, 823, 967
BstMAI	GTCTC	3 cut(s)	208, 519, 682
BstMBI	GATC	6 cut(s)	289, 417, 727, 760, 820, 964
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 593, 877
BstNI	CCWGG	1 cut(s)	855
BstSCI	CCNGG	1 cut(s)	853
BstV1I	GCAGC	4 cut(s)	23, 325, 378, 381
Bsu36I	CCTNAGG	1 cut(s)	777
BsuI	GTATCC	1 cut(s)	819
BtrI	CACGTC	1 cut(s)	274
BtsCI	GGATG	5 cut(s)	220, 268, 610, 754, 802
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	2 cut(s)	36, 801
Cac8I	GCNNGC	3 cut(s)	442, 598, 873
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	2 cut(s)	548, 851
Csp6I	GTAC	1 cut(s)	676
CviAII	CATG	2 cut(s)	767, 876
CviQI	GTAC	1 cut(s)	676
DdeI	CTNAG	1 cut(s)	777
DpnI	GATC	6 cut(s)	291, 419, 729, 762, 822, 966
DpnII	GATC	6 cut(s)	289, 417, 727, 760, 820, 964
Eco130I	CCWWGG	1 cut(s)	410
Eco47I	GGWCC	2 cut(s)	548, 851
Eco81I	CCTNAGG	1 cut(s)	777
EcoRII	CCWGG	1 cut(s)	853
EcoT14I	CCWWGG	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	2 cut(s)	770, 879
FatI	CATG	2 cut(s)	766, 875
FauI	CCCGC	1 cut(s)	71
FauNDI	CATATG	1 cut(s)	736
Fnu4HI	GCNGC	5 cut(s)	9, 12, 339, 392, 395
FokI	GGATG	5 cut(s)	227, 275, 617, 761, 789
Fsp4HI	GCNGC	5 cut(s)	9, 12, 339, 392, 395
FspBI	CTAG	2 cut(s)	411, 731
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	5 cut(s)	9, 12, 339, 392, 395
HapII	CCGG	1 cut(s)	114
HhaI	GCGC	1 cut(s)	399
Hin1I	GRCGYC	1 cut(s)	382
Hin1II	CATG	2 cut(s)	770, 879
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HinfI	GANTC	3 cut(s)	143, 307, 317
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	2 cut(s)	45, 644
Hpy188III	TCNNGA	3 cut(s)	423, 518, 580
Hpy99I	CGWCG	2 cut(s)	387, 390
HpyAV	CCTTC	1 cut(s)	878
HpyCH4III	ACNGT	4 cut(s)	90, 225, 492, 955
HpyCH4IV	ACGT	4 cut(s)	273, 281, 382, 612
HpyCH4V	TGCA	4 cut(s)	135, 341, 600, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 593, 877
HpyF3I	CTNAG	1 cut(s)	777
HpySE526I	ACGT	4 cut(s)	273, 281, 382, 612
Hsp92I	GRCGYC	1 cut(s)	382
Hsp92II	CATG	2 cut(s)	770, 879
HspAI	GCGC	1 cut(s)	397
Kzo9I	GATC	6 cut(s)	289, 417, 727, 760, 820, 964
Lsp1109I	GCAGC	4 cut(s)	23, 325, 378, 381
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	2 cut(s)	411, 731
MaeII	ACGT	4 cut(s)	273, 281, 382, 612
MaeIII	GTNAC	3 cut(s)	166, 277, 632
MalI	GATC	6 cut(s)	291, 419, 729, 762, 822, 966
MboI	GATC	6 cut(s)	289, 417, 727, 760, 820, 964
MboII	GAAGA	2 cut(s)	467, 515
MluCI	AATT	8 cut(s)	128, 357, 529, 588, 639, 658, 755, 914
MlyI	GAGTC	2 cut(s)	137, 311
MnlI	CCTC	5 cut(s)	42, 108, 179, 539, 772
MseI	TTAA	1 cut(s)	645
MslI	CAYNNNNRTG	1 cut(s)	932
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	855
MvaI	CCWGG	1 cut(s)	855
MwoI	GCNNNNNNNGC	3 cut(s)	17, 593, 877
NdeI	CATATG	1 cut(s)	736
NdeII	GATC	6 cut(s)	289, 417, 727, 760, 820, 964
NlaIII	CATG	2 cut(s)	770, 879
NmeAIII	GCCGAG	1 cut(s)	299
NmuCI	GTSAC	2 cut(s)	166, 632
PfeI	GAWTC	1 cut(s)	307
PflFI	GACNNNGTC	1 cut(s)	384
PkrI	GCNGC	5 cut(s)	10, 13, 340, 393, 396
PleI	GAGTC	2 cut(s)	137, 311
PpsI	GAGTC	2 cut(s)	137, 311
PsiI	TTATAA	2 cut(s)	330, 528
Psp6I	CCWGG	1 cut(s)	853
PspGI	CCWGG	1 cut(s)	853
PspPI	GGNCC	2 cut(s)	548, 851
PsyI	GACNNNGTC	1 cut(s)	384
RsaI	GTAC	1 cut(s)	677
RsaNI	GTAC	1 cut(s)	676
RseI	CAYNNNNRTG	1 cut(s)	932
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	5 cut(s)	9, 12, 339, 392, 395
Sau3AI	GATC	6 cut(s)	289, 417, 727, 760, 820, 964
Sau96I	GGNCC	2 cut(s)	548, 851
SchI	GAGTC	2 cut(s)	137, 311
ScrFI	CCNGG	1 cut(s)	855
SfaNI	GCATC	1 cut(s)	23
SinI	GGWCC	2 cut(s)	548, 851
SmiMI	CAYNNNNRTG	1 cut(s)	932
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
Sse9I	AATT	8 cut(s)	128, 357, 529, 588, 639, 658, 755, 914
SsiI	CCGC	3 cut(s)	8, 64, 151
SspI	AATATT	1 cut(s)	524
SspMI	CTAG	2 cut(s)	411, 731
StyD4I	CCNGG	1 cut(s)	853
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	4 cut(s)	90, 225, 492, 955
TaiI	ACGT	4 cut(s)	276, 284, 385, 615
TasI	AATT	8 cut(s)	128, 357, 529, 588, 639, 658, 755, 914
TatI	WGTACW	1 cut(s)	675
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TscAI	CASTG	2 cut(s)	43, 801
TseFI	GTSAC	2 cut(s)	166, 632
TseI	GCWGC	4 cut(s)	11, 338, 391, 394
Tsp45I	GTSAC	2 cut(s)	166, 632
TspDTI	ATGAA	6 cut(s)	17, 279, 468, 485, 516, 783
TspGWI	ACGGA	1 cut(s)	795
TspRI	CASTG	2 cut(s)	43, 801
Tth111I	GACNNNGTC	1 cut(s)	384
VpaK11BI	GGWCC	2 cut(s)	548, 851
XapI	RAATTY	1 cut(s)	658
XmaJI	CCTAGG	1 cut(s)	410
XspI	CTAG	2 cut(s)	411, 731
ZraI	GACGTC	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.