Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009445.1

Orthogroup ID

OG0005863

Physical Location & Seq

Genomic Coordinates Reverse (-)

17172 .. 21428

Gene Structure 4257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009445.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgggtgttggtcaagataagacaaacttgttagcaacagtattttggtttgctaaacctgtcaccacatcaaattacgagtgtctgtttttcaggaaaaaaattgatgatattccccaggaaaggcgccgtcggctgctgcgcttgctagagcctaggctgatctcaagagcttgggagatagctggcacacgatatgaagaacccaagttgatgaacagaagctcatctcaactgttgtctaatgaagatggtgtctctcttgaatattataattgccgaacaagtggaggaccaatgctcatttcttggataaactttttcaaaacggctattttttcttgcaaggatgggaacgtatatggacgatttattggtgaaacaattcttaatggacttgcaaattcctttagtccactgtactttgtagtgagccagctgaaggaagtaatggcaactgaacaaccttgtgatctagcatatgagttcggggatgggctgtttgatctccatgaataccccgagggctttccaagaccagtgaaacatccgtatcctttcaacgatcaggtggttgtctatgttcgtcatctaggaccaggcgtgtcagtagggcaagcgtggcaagaaggaaaagcattacaacaagtaccacaaaaattatgtggtgacattctaatggtgaaagattattctacccttagagaagatcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

27.27

Weight (kDa)

6.33

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73090 AT1G73090
fragaria_vesca	FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290
malus_domestica	MD09G1158700.v1.1
prunus_persica	Prupe.3G167100_v2.0.a1 Prupe.3G167100_v2.0.a1
pyrus_communis	pycom09g07730
rosa_chinensis	RchiOBHm_Chr1g0381181 RchiOBHm_Chr2g0150121
rosa_laevigata	RLG00000020468
rosa_multiflora	Rmu_sc0000156.1_g000009 Rmu_sc0009445.1_g000003
rosa_roxburghii	Rroxscaffold_2G00097430
rosa_rugosa	Rorug02G0419300
rosa_samantha	Rh1AG306600 Rh1CG035500 Rh2AG477900 Rh2BG490500 Rh2CG464100 Rh2DG499300 Rh4AG247100 Rh5DG267800
rosa_wichuraiana	Rw2G039010 Rw5G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
AccB1I	GGYRCC	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	403
AcuI	CTGAAG	1 cut(s)	461
AcyI	GRCGYC	1 cut(s)	127
AfaI	GTAC	2 cut(s)	422, 651
AfiI	CCNNNNNNNGG	2 cut(s)	123, 442
AgsI	TTSAA	3 cut(s)	266, 325, 562
AjnI	CCWGG	2 cut(s)	117, 598
AjuI	GAANNNNNNNTTGG	2 cut(s)	289, 321
AluBI	AGCT	4 cut(s)	173, 185, 225, 439
AluI	AGCT	4 cut(s)	173, 185, 225, 439
Alw26I	GTCTC	1 cut(s)	262
Ama87I	CYCGRG	1 cut(s)	521
ApeKI	GCWGC	2 cut(s)	136, 139
ApoI	RAATTY	1 cut(s)	403
Asp700I	GAANNNNTTC	1 cut(s)	384
AspA2I	CCTAGG	1 cut(s)	155
AspLEI	GCGC	2 cut(s)	129, 144
AspS9I	GGNCC	2 cut(s)	293, 596
AsuHPI	GGTGA	4 cut(s)	55, 389, 680, 694
AvaI	CYCGRG	1 cut(s)	521
AvaII	GGWCC	2 cut(s)	293, 596
AvrII	CCTAGG	1 cut(s)	155
BaeI	ACNNNNGTAYC	2 cut(s)	536, 569
BanI	GGYRCC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	123, 126
BccI	CCATC	3 cut(s)	245, 344, 488
BceAI	ACGGC	2 cut(s)	114, 345
BciT130I	CCWGG	2 cut(s)	119, 600
BciVI	GTATCC	1 cut(s)	564
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	4 cut(s)	149, 156, 476, 593
BfoI	RGCGCY	1 cut(s)	130
BfuI	GTATCC	1 cut(s)	564
BisI	GCNGC	2 cut(s)	137, 140
BlnI	CCTAGG	1 cut(s)	155
BlsI	GCNGC	2 cut(s)	138, 141
Bme1390I	CCNGG	2 cut(s)	119, 600
Bme18I	GGWCC	2 cut(s)	293, 596
BmeT110I	CYCGRG	1 cut(s)	521
BmgT120I	GGNCC	2 cut(s)	293, 596
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	2 cut(s)	119, 600
BpuEI	CTTGAG	1 cut(s)	151
BsaHI	GRCGYC	1 cut(s)	127
BsaJI	CCNNGG	3 cut(s)	117, 155, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 442
Bse1I	ACTGG	1 cut(s)	539
BseBI	CCWGG	2 cut(s)	119, 600
BseDI	CCNNGG	3 cut(s)	117, 155, 522
BseGI	GGATG	3 cut(s)	355, 499, 547
BseLI	CCNNNNNNNGG	2 cut(s)	123, 442
BseNI	ACTGG	1 cut(s)	539
BseXI	GCAGC	2 cut(s)	123, 126
BshNI	GGYRCC	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	521
BslI	CCNNNNNNNGG	2 cut(s)	123, 442
BsmAI	GTCTC	1 cut(s)	262
BsoBI	CYCGRG	1 cut(s)	521
Bsp143I	GATC	5 cut(s)	162, 472, 505, 565, 709
BspLI	GGNNCC	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	539
BssECI	CCNNGG	3 cut(s)	117, 155, 522
BssMI	GATC	5 cut(s)	162, 472, 505, 565, 709
BssNI	GRCGYC	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	155
Bst2UI	CCWGG	2 cut(s)	119, 600
Bst4CI	ACNGT	3 cut(s)	40, 237, 420
BstACI	GRCGYC	1 cut(s)	127
BstC8I	GCNNGC	4 cut(s)	146, 187, 437, 618
BstDEI	CTNAG	1 cut(s)	701
BstF5I	GGATG	3 cut(s)	355, 499, 547
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	2 cut(s)	129, 144
BstKTI	GATC	5 cut(s)	165, 475, 508, 568, 712
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	5 cut(s)	162, 472, 505, 565, 709
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 145, 622
BstNI	CCWGG	2 cut(s)	119, 600
BstSCI	CCNGG	2 cut(s)	117, 598
BstV1I	GCAGC	2 cut(s)	123, 126
BsuI	GTATCC	1 cut(s)	564
BtsCI	GGATG	3 cut(s)	355, 499, 547
BtsIMutI	CAGTG	2 cut(s)	416, 546
Cac8I	GCNNGC	4 cut(s)	146, 187, 437, 618
CfoI	GCGC	2 cut(s)	129, 144
Cfr13I	GGNCC	2 cut(s)	293, 596
Csp6I	GTAC	2 cut(s)	421, 650
CviAII	CATG	1 cut(s)	512
CviQI	GTAC	2 cut(s)	421, 650
DdeI	CTNAG	1 cut(s)	701
DinI	GGCGCC	1 cut(s)	128
DpnI	GATC	5 cut(s)	164, 474, 507, 567, 711
DpnII	GATC	5 cut(s)	162, 472, 505, 565, 709
Eco130I	CCWWGG	1 cut(s)	155
Eco47I	GGWCC	2 cut(s)	293, 596
Eco57I	CTGAAG	1 cut(s)	461
Eco88I	CYCGRG	1 cut(s)	521
EcoRII	CCWGG	2 cut(s)	117, 598
EcoT14I	CCWWGG	1 cut(s)	155
EgeI	GGCGCC	1 cut(s)	128
EheI	GGCGCC	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	1 cut(s)	515
FaiI	YATR	9 cut(s)	198, 273, 361, 363, 481, 483, 513, 582, 664
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FatI	CATG	1 cut(s)	511
FauNDI	CATATG	1 cut(s)	481
Fnu4HI	GCNGC	2 cut(s)	137, 140
FokI	GGATG	3 cut(s)	362, 506, 534
Fsp4HI	GCNGC	2 cut(s)	137, 140
FspBI	CTAG	4 cut(s)	149, 156, 476, 593
GlaI	GCGC	2 cut(s)	128, 143
GluI	GCNGC	2 cut(s)	137, 140
HaeII	RGCGCY	1 cut(s)	130
HhaI	GCGC	2 cut(s)	129, 144
Hin1I	GRCGYC	1 cut(s)	127
Hin1II	CATG	1 cut(s)	515
Hin6I	GCGC	2 cut(s)	127, 142
HinP1I	GCGC	2 cut(s)	127, 142
HphI	GGTGA	4 cut(s)	55, 389, 680, 694
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188III	TCNNGA	4 cut(s)	14, 94, 168, 263
Hpy8I	GTNNAC	1 cut(s)	416
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	2 cut(s)	436, 623
HpyCH4III	ACNGT	3 cut(s)	40, 237, 420
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	2 cut(s)	345, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 145, 622
HpyF3I	CTNAG	1 cut(s)	701
HpySE526I	ACGT	1 cut(s)	357
Hsp92I	GRCGYC	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	515
HspAI	GCGC	2 cut(s)	127, 142
KasI	GGCGCC	1 cut(s)	126
Kzo9I	GATC	5 cut(s)	162, 472, 505, 565, 709
Lsp1109I	GCAGC	2 cut(s)	123, 126
MaeI	CTAG	4 cut(s)	149, 156, 476, 593
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	2 cut(s)	61, 668
MalI	GATC	5 cut(s)	164, 474, 507, 567, 711
MboI	GATC	5 cut(s)	162, 472, 505, 565, 709
MboII	GAAGA	2 cut(s)	212, 260
MluCI	AATT	6 cut(s)	73, 102, 274, 384, 403, 659
Mly113I	GGCGCC	1 cut(s)	127
MnlI	CCTC	2 cut(s)	284, 517
MroXI	GAANNNNTTC	1 cut(s)	384
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	677
MspA1I	CMGCKG	1 cut(s)	439
MspR9I	CCNGG	2 cut(s)	119, 600
MvaI	CCWGG	2 cut(s)	119, 600
MwoI	GCNNNNNNNGC	3 cut(s)	133, 145, 622
NarI	GGCGCC	1 cut(s)	127
NdeI	CATATG	1 cut(s)	481
NdeII	GATC	5 cut(s)	162, 472, 505, 565, 709
NlaIII	CATG	1 cut(s)	515
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	2 cut(s)	61, 668
PdmI	GAANNNNTTC	1 cut(s)	384
PkrI	GCNGC	2 cut(s)	138, 141
PluTI	GGCGCC	1 cut(s)	130
PsiI	TTATAA	1 cut(s)	273
Psp6I	CCWGG	2 cut(s)	117, 598
PspGI	CCWGG	2 cut(s)	117, 598
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	2 cut(s)	293, 596
PvuII	CAGCTG	1 cut(s)	439
RsaI	GTAC	2 cut(s)	422, 651
RsaNI	GTAC	2 cut(s)	421, 650
RseI	CAYNNNNRTG	1 cut(s)	677
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	2 cut(s)	137, 140
Sau3AI	GATC	5 cut(s)	162, 472, 505, 565, 709
Sau96I	GGNCC	2 cut(s)	293, 596
ScrFI	CCNGG	2 cut(s)	119, 600
SetI	ASST	8 cut(s)	61, 175, 187, 227, 360, 441, 469, 573
SfoI	GGCGCC	1 cut(s)	128
SinI	GGWCC	2 cut(s)	293, 596
SmiMI	CAYNNNNRTG	1 cut(s)	677
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	6 cut(s)	73, 102, 274, 384, 403, 659
SspDI	GGCGCC	1 cut(s)	126
SspI	AATATT	1 cut(s)	269
SspMI	CTAG	4 cut(s)	149, 156, 476, 593
StyD4I	CCNGG	2 cut(s)	117, 598
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	3 cut(s)	40, 237, 420
TaiI	ACGT	1 cut(s)	360
TasI	AATT	6 cut(s)	73, 102, 274, 384, 403, 659
TatI	WGTACW	1 cut(s)	420
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	2 cut(s)	423, 546
TseFI	GTSAC	2 cut(s)	61, 668
TseI	GCWGC	2 cut(s)	136, 139
Tsp45I	GTSAC	2 cut(s)	61, 668
TspDTI	ATGAA	4 cut(s)	213, 230, 261, 528
TspGWI	ACGGA	1 cut(s)	540
TspRI	CASTG	2 cut(s)	423, 546
VpaK11BI	GGWCC	2 cut(s)	293, 596
XapI	RAATTY	1 cut(s)	403
XmaJI	CCTAGG	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	4 cut(s)	149, 156, 476, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.