Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005863

Physical Location & Seq

Genomic Coordinates Forward (+)

18573562 .. 18578243

Gene Structure 4682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G167100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAAGGCAGAGGCAGCAGCAGCAACCTTCAACAATCCCATTCGTCCCCTCCCATCCAATCTCTGCTCATCACCCATTTCCCGCCAAATCAACTTCCCTTACCAAAGGTGTCTACTTGGTCGATATAATTCCGTCAAAGGCTTGCAGTTGTACAGCCGTGGGTCTCTACAGTATACTGGGGGTGTAGTTTGTGCTGTCAATGGAGGTGGGAGAGGGTATGTATCTTCGTGGGACGAGAAACCATATGAATATCTTCCAACTGGGAGAAAATCTTACTTGGATGAGCAAGACATTGTCACATTTCTTGACCCTCCTAAGGACTTGATTCCTCTGGACTCGGCTTCTTACAATCCTGCTGCATATCTTTGGAAAAAAATTGATGATATCCCCCCCGAAAGGCGTCATCGACTGCTGCGATTGCTAGAACCTAGGCTCATATCAAGAGCTTGGGAGATAGCTGGCACAAGATACGAGGATCCCAACTTAGCCAAGAGAAGTGCATCTAAATTGTTGTCCAATGAAGATGGTGCAATTTCTCTTGAATATTATAATTGCCGAACAAATGGAGGACCAATGCCCATTTCTTGGATAAACTCTTTCAAGAAGGGGATGTGTAATTGGATGTTCTGCAAATTCCAGGCAATTTTTTCTTGGAAGGACGGGGAGATTTATGGACGATTTATTGGTGGATCATTTGTTACTGGACTTGCAAATTCCTTTAGTCCATTGTACTTCGTAGTGAGACAGCTTAAGGAAGTAATGCCAACTGAACAACCTTGTGATCTAGCATATGAATTTGGGGATGGGCTGTTTGATCTCCATGAATACCCAGAGGGTTTTCCAAAACCAGTCAAGCATCCATATCCTTTCAACGATCAAGTGGTTGTGTATGTTCGTCATCTGGGACCGGGTGTTTCAGTAGGGCAAGCATGGCAAGAAGGAAAAGAATTACAACAGGTACCACAAAAGTTATGCAGCGAGATTCTGATGGTGAAAGATTATTCTGCTCTTAGAGAAAATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

342

Amino Acids

38.7

Weight (kDa)

8.29

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73090 AT1G73090
fragaria_vesca	FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290
malus_domestica	MD09G1158700.v1.1
prunus_persica	Prupe.3G167100_v2.0.a1 Prupe.3G167100_v2.0.a1
pyrus_communis	pycom09g07730
rosa_chinensis	RchiOBHm_Chr1g0381181 RchiOBHm_Chr2g0150121
rosa_laevigata	RLG00000020468
rosa_multiflora	Rmu_sc0000156.1_g000009 Rmu_sc0009445.1_g000003
rosa_roxburghii	Rroxscaffold_2G00097430
rosa_rugosa	Rorug02G0419300
rosa_samantha	Rh1AG306600 Rh1CG035500 Rh2AG477900 Rh2BG490500 Rh2CG464100 Rh2DG499300 Rh4AG247100 Rh5DG267800
rosa_wichuraiana	Rw2G039010 Rw5G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
Acc65I	GGTACC	1 cut(s)	958
AccB1I	GGYRCC	1 cut(s)	958
AccB7I	CCANNNNNTGG	1 cut(s)	585
AccI	GTMKAC	2 cut(s)	112, 173
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	3 cut(s)	470, 483, 697
AcsI	RAATTY	3 cut(s)	632, 712, 794
AcyI	GRCGYC	1 cut(s)	400
AfaI	GTAC	3 cut(s)	152, 731, 960
AfiI	CCNNNNNNNGG	3 cut(s)	316, 396, 585
AflII	CTTAAG	1 cut(s)	749
AgsI	TTSAA	4 cut(s)	31, 542, 601, 871
AjnI	CCWGG	1 cut(s)	636
AjuI	GAANNNNNNNTTGG	2 cut(s)	565, 597
AluBI	AGCT	3 cut(s)	446, 458, 748
AluI	AGCT	3 cut(s)	446, 458, 748
Alw26I	GTCTC	2 cut(s)	168, 736
AlwI	GGATC	3 cut(s)	470, 483, 697
ApeKI	GCWGC	6 cut(s)	14, 17, 20, 356, 412, 975
ApoI	RAATTY	3 cut(s)	632, 712, 794
Asp700I	GAANNNNTTC	1 cut(s)	252
Asp718I	GGTACC	1 cut(s)	958
AspA2I	CCTAGG	1 cut(s)	428
AspS9I	GGNCC	2 cut(s)	569, 905
AsuC2I	CCSGG	1 cut(s)	909
AsuHPI	GGTGA	2 cut(s)	63, 1003
AvaII	GGWCC	2 cut(s)	569, 905
AvrII	CCTAGG	1 cut(s)	428
AxyI	CCTNAGG	1 cut(s)	315
BamHI	GGATCC	1 cut(s)	475
BanI	GGYRCC	1 cut(s)	958
BbvI	GCAGC	6 cut(s)	26, 29, 32, 343, 399, 987
BccI	CCATC	4 cut(s)	61, 518, 797, 982
BceAI	ACGGC	1 cut(s)	141
BciT130I	CCWGG	1 cut(s)	638
BcnI	CCSGG	1 cut(s)	909
BcoDI	GTCTC	2 cut(s)	168, 736
BfaI	CTAG	3 cut(s)	422, 429, 785
BfmI	CTRYAG	1 cut(s)	167
BfrI	CTTAAG	1 cut(s)	749
BisI	GCNGC	6 cut(s)	15, 18, 21, 357, 413, 976
BlnI	CCTAGG	1 cut(s)	428
BlsI	GCNGC	6 cut(s)	16, 19, 22, 358, 414, 977
Bme1390I	CCNGG	2 cut(s)	638, 909
Bme18I	GGWCC	2 cut(s)	569, 905
BmgT120I	GGNCC	2 cut(s)	569, 905
BmiI	GGNNCC	3 cut(s)	477, 906, 960
BmrFI	CCNGG	2 cut(s)	638, 909
BmrI	ACTGGG	2 cut(s)	186, 270
BmsI	GCATC	2 cut(s)	509, 865
BmuI	ACTGGG	2 cut(s)	186, 270
BpuMI	CCSGG	1 cut(s)	909
BsaHI	GRCGYC	1 cut(s)	400
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	157, 428
Bsc4I	CCNNNNNNNGG	3 cut(s)	316, 396, 585
Bse1I	ACTGG	4 cut(s)	181, 265, 706, 848
Bse21I	CCTNAGG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	638
BseDI	CCNNGG	2 cut(s)	157, 428
BseGI	GGATG	6 cut(s)	53, 286, 615, 627, 808, 856
BseLI	CCNNNNNNNGG	3 cut(s)	316, 396, 585
BseNI	ACTGG	4 cut(s)	181, 265, 706, 848
BseXI	GCAGC	6 cut(s)	26, 29, 32, 343, 399, 987
BshNI	GGYRCC	1 cut(s)	958
BsiSI	CCGG	1 cut(s)	908
BslFI	GGGAC	3 cut(s)	30, 245, 918
BslI	CCNNNNNNNGG	3 cut(s)	316, 396, 585
BsmAI	GTCTC	2 cut(s)	168, 736
BsmFI	GGGAC	3 cut(s)	30, 245, 918
Bso31I	GGTCTC	1 cut(s)	168
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	5 cut(s)	475, 689, 781, 814, 874
BspACI	CCGC	1 cut(s)	82
BspLI	GGNNCC	3 cut(s)	477, 906, 960
BspPI	GGATC	3 cut(s)	470, 483, 697
BspT107I	GGYRCC	1 cut(s)	958
BspTI	CTTAAG	1 cut(s)	749
BspTNI	GGTCTC	1 cut(s)	168
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	4 cut(s)	181, 265, 706, 848
BssECI	CCNNGG	2 cut(s)	157, 428
BssMI	GATC	5 cut(s)	475, 689, 781, 814, 874
BssNAI	GTATAC	1 cut(s)	174
BssNI	GRCGYC	1 cut(s)	400
BssT1I	CCWWGG	1 cut(s)	428
Bst1107I	GTATAC	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	638
Bst4CI	ACNGT	1 cut(s)	171
BstACI	GRCGYC	1 cut(s)	400
BstAFI	CTTAAG	1 cut(s)	749
BstAUI	TGTACA	1 cut(s)	150
BstC8I	GCNNGC	3 cut(s)	143, 460, 927
BstDEI	CTNAG	3 cut(s)	315, 484, 1010
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	6 cut(s)	53, 286, 615, 627, 808, 856
BstKTI	GATC	5 cut(s)	478, 692, 784, 817, 877
BstMAI	GTCTC	2 cut(s)	168, 736
BstMBI	GATC	5 cut(s)	475, 689, 781, 814, 874
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 20, 418, 931
BstNI	CCWGG	1 cut(s)	638
BstSCI	CCNGG	2 cut(s)	636, 907
BstSFI	CTRYAG	1 cut(s)	167
BstV1I	GCAGC	6 cut(s)	26, 29, 32, 343, 399, 987
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BstZ17I	GTATAC	1 cut(s)	174
Bsu36I	CCTNAGG	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	6 cut(s)	53, 286, 615, 627, 808, 856
Cac8I	GCNNGC	3 cut(s)	143, 460, 927
Cfr13I	GGNCC	2 cut(s)	569, 905
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	3 cut(s)	151, 730, 959
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	2 cut(s)	821, 930
CviJI	RGCY	9 cut(s)	141, 156, 341, 433, 446, 458, 488, 748, 808
CviKI_1	RGCY	9 cut(s)	141, 156, 341, 433, 446, 458, 488, 748, 808
CviQI	GTAC	3 cut(s)	151, 730, 959
DdeI	CTNAG	3 cut(s)	315, 484, 1010
DpnI	GATC	5 cut(s)	477, 691, 783, 816, 876
DpnII	GATC	5 cut(s)	475, 689, 781, 814, 874
Eco130I	CCWWGG	1 cut(s)	428
Eco31I	GGTCTC	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	385
Eco47I	GGWCC	2 cut(s)	569, 905
Eco81I	CCTNAGG	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	636
EcoRV	GATATC	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	428
FaeI	CATG	2 cut(s)	824, 933
FaqI	GGGAC	3 cut(s)	30, 245, 918
FatI	CATG	2 cut(s)	820, 929
FauI	CCCGC	1 cut(s)	89
FauNDI	CATATG	2 cut(s)	244, 790
FblI	GTMKAC	2 cut(s)	112, 173
Fnu4HI	GCNGC	6 cut(s)	15, 18, 21, 357, 413, 976
FokI	GGATG	6 cut(s)	40, 293, 622, 634, 815, 843
Fsp4HI	GCNGC	6 cut(s)	15, 18, 21, 357, 413, 976
FspBI	CTAG	3 cut(s)	422, 429, 785
GluI	GCNGC	6 cut(s)	15, 18, 21, 357, 413, 976
HapII	CCGG	1 cut(s)	908
HgaI	GACGC	1 cut(s)	389
Hin1I	GRCGYC	1 cut(s)	400
Hin1II	CATG	2 cut(s)	824, 933
HinfI	GANTC	3 cut(s)	325, 335, 982
HpaII	CCGG	1 cut(s)	908
HphI	GGTGA	2 cut(s)	63, 1003
Hpy166II	GTNNAC	2 cut(s)	113, 174
Hpy188I	TCNGA	1 cut(s)	987
Hpy188III	TCNNGA	5 cut(s)	305, 332, 441, 539, 601
Hpy8I	GTNNAC	2 cut(s)	113, 174
HpyAV	CCTTC	4 cut(s)	37, 598, 649, 932
HpyCH4III	ACNGT	1 cut(s)	171
HpyCH4V	TGCA	7 cut(s)	145, 359, 500, 530, 630, 710, 975
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 20, 418, 931
HpyF3I	CTNAG	3 cut(s)	315, 484, 1010
Hsp92I	GRCGYC	1 cut(s)	400
Hsp92II	CATG	2 cut(s)	824, 933
KpnI	GGTACC	1 cut(s)	962
Kzo9I	GATC	5 cut(s)	475, 689, 781, 814, 874
Lsp1109I	GCAGC	6 cut(s)	26, 29, 32, 343, 399, 987
LweI	GCATC	2 cut(s)	509, 865
MaeI	CTAG	3 cut(s)	422, 429, 785
MaeIII	GTNAC	2 cut(s)	295, 697
MalI	GATC	5 cut(s)	477, 691, 783, 816, 876
MboI	GATC	5 cut(s)	475, 689, 781, 814, 874
MboII	GAAGA	3 cut(s)	216, 245, 533
MflI	RGATCY	1 cut(s)	475
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	9 cut(s)	4, 59, 197, 206, 321, 339, 466, 560, 826
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	1 cut(s)	750
MspCI	CTTAAG	1 cut(s)	749
MspI	CCGG	1 cut(s)	908
MspR9I	CCNGG	2 cut(s)	638, 909
MvaI	CCWGG	1 cut(s)	638
MwoI	GCNNNNNNNGC	4 cut(s)	14, 20, 418, 931
NciI	CCSGG	1 cut(s)	909
NdeI	CATATG	2 cut(s)	244, 790
NdeII	GATC	5 cut(s)	475, 689, 781, 814, 874
NlaIII	CATG	2 cut(s)	824, 933
NlaIV	GGNNCC	3 cut(s)	477, 906, 960
NmeAIII	GCCGAG	1 cut(s)	317
NmuCI	GTSAC	1 cut(s)	295
PcsI	WCGNNNNNNNCGW	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	325, 982
PflFI	GACNNNGTC	1 cut(s)	293
PflMI	CCANNNNNTGG	1 cut(s)	585
PkrI	GCNGC	6 cut(s)	16, 19, 22, 358, 414, 977
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
PsiI	TTATAA	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	636
PspGI	CCWGG	1 cut(s)	636
PspN4I	GGNNCC	3 cut(s)	477, 906, 960
PspPI	GGNCC	2 cut(s)	569, 905
PsuI	RGATCY	1 cut(s)	475
PsyI	GACNNNGTC	1 cut(s)	293
RsaI	GTAC	3 cut(s)	152, 731, 960
RsaNI	GTAC	3 cut(s)	151, 730, 959
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	6 cut(s)	15, 18, 21, 357, 413, 976
Sau3AI	GATC	5 cut(s)	475, 689, 781, 814, 874
Sau96I	GGNCC	2 cut(s)	569, 905
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	2 cut(s)	638, 909
SetI	ASST	9 cut(s)	29, 110, 208, 430, 448, 460, 750, 778, 960
SfaNI	GCATC	2 cut(s)	509, 865
SfcI	CTRYAG	1 cut(s)	167
SinI	GGWCC	2 cut(s)	569, 905
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
SsiI	CCGC	1 cut(s)	82
SspI	AATATT	1 cut(s)	545
SspMI	CTAG	3 cut(s)	422, 429, 785
StyD4I	CCNGG	2 cut(s)	636, 907
StyI	CCWWGG	1 cut(s)	428
TaaI	ACNGT	1 cut(s)	171
TaqI	TCGA	2 cut(s)	121, 406
TatI	WGTACW	2 cut(s)	150, 729
TfiI	GAWTC	2 cut(s)	325, 982
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	6 cut(s)	14, 17, 20, 356, 412, 975
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	5 cut(s)	17, 261, 534, 807, 837
TspGWI	ACGGA	1 cut(s)	121
Tth111I	GACNNNGTC	1 cut(s)	293
Van91I	CCANNNNNTGG	1 cut(s)	585
Vha464I	CTTAAG	1 cut(s)	749
VpaK11BI	GGWCC	2 cut(s)	569, 905
XapI	RAATTY	3 cut(s)	632, 712, 794
XmaJI	CCTAGG	1 cut(s)	428
XmiI	GTMKAC	2 cut(s)	112, 173
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	3 cut(s)	422, 429, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.