Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005863

Physical Location & Seq

Genomic Coordinates Forward (+)

53966807 .. 53977015

Gene Structure 10209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG306600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAATGGTGCTTCAGAAATTGATGAGTATTTGATTTTAATCCTTGAGAGTGAAATTTCAGATTGCATTTTCAACAATGTTGCTATGGATGAGCGGTTTAAGGAGGAAAGTGAATATTATGGATGGAATTCAGGATCATTGATGTCTGGACAATGGTTATGCAGGCTGATCTCAAGAGCTTGGGAGATACCTAGCACACGATATGAAGAACCCAAGTTGATGAACAGAAGCTCATTTCAACTGTTGTCTAATGAAGATGGTGTCTCTCTTGAATATTATAATTGCCCAACAAGTGGAGGTAACTCAAGTGCTCACTATTATACTGGTGTAGTTTCTGCAGCTCTCACAGTTTGGGGTTATAGAGTAACTCGTGATTCTGAGTTTCACTTAAATCTCAAGTTTCTGACACTTATTTTCAATCATTTAATAGGATCAATGCCCATTTCTTGGATAAACTTTTTCAAGACGACTCTAATAGGGTATTATGCAAATCTCAGGCAATTTTTCCTTGCAAGGATGGCAACGTATATGGACGATTTATTGGCTGTTGCTGACATCATCCGTACAACCTTGGGACCAAGGTCCATGTTAAAGATGCTACTGGATGCTAGTGGAGGTAATCCTTTTGCCTTAAGTGGACAAATTTTACTCAAAGATCTGCCCAGTGAACATCAAATCGTTGATCAATCCACGAGGTATGTAATGTGTAAGCCCCTATCCCCTAATGAAGTTTTTGTAAGAGATTACAATGATTTTGATAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

29.16

Weight (kDa)

4.96

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73090 AT1G73090
fragaria_vesca	FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290
malus_domestica	MD09G1158700.v1.1
prunus_persica	Prupe.3G167100_v2.0.a1 Prupe.3G167100_v2.0.a1
pyrus_communis	pycom09g07730
rosa_chinensis	RchiOBHm_Chr1g0381181 RchiOBHm_Chr2g0150121
rosa_laevigata	RLG00000020468
rosa_multiflora	Rmu_sc0000156.1_g000009 Rmu_sc0009445.1_g000003
rosa_roxburghii	Rroxscaffold_2G00097430
rosa_rugosa	Rorug02G0419300
rosa_samantha	Rh1AG306600 Rh1CG035500 Rh2AG477900 Rh2BG490500 Rh2CG464100 Rh2DG499300 Rh4AG247100 Rh5DG267800
rosa_wichuraiana	Rw2G039010 Rw5G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	279
AccB7I	CCANNNNNTGG	2 cut(s)	293, 447
AccBSI	CCGCTC	1 cut(s)	94
AciI	CCGC	1 cut(s)	94
AclWI	GGATC	2 cut(s)	142, 439
AcsI	RAATTY	3 cut(s)	54, 127, 642
AfaI	GTAC	1 cut(s)	565
AfiI	CCNNNNNNNGG	2 cut(s)	293, 447
AflII	CTTAAG	1 cut(s)	631
AgsI	TTSAA	5 cut(s)	73, 239, 272, 418, 463
AluBI	AGCT	3 cut(s)	179, 231, 341
AluI	AGCT	3 cut(s)	179, 231, 341
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	268
AlwI	GGATC	2 cut(s)	142, 439
ApeKI	GCWGC	1 cut(s)	338
ApoI	RAATTY	3 cut(s)	54, 127, 642
AspS9I	GGNCC	2 cut(s)	575, 582
AvaII	GGWCC	2 cut(s)	575, 582
BauI	CACGAG	2 cut(s)	369, 691
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	3 cut(s)	117, 251, 511
BclI	TGATCA	1 cut(s)	682
BcoDI	GTCTC	1 cut(s)	268
BfaI	CTAG	2 cut(s)	192, 609
BfmI	CTRYAG	1 cut(s)	336
BfrI	CTTAAG	1 cut(s)	631
BglII	AGATCT	1 cut(s)	655
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme18I	GGWCC	2 cut(s)	575, 582
BmgT120I	GGNCC	2 cut(s)	575, 582
BmiI	GGNNCC	1 cut(s)	576
BmrI	ACTGGG	1 cut(s)	657
BmsI	GCATC	2 cut(s)	585, 595
BmuI	ACTGGG	1 cut(s)	657
BoxI	GACNNNNGTC	1 cut(s)	580
BpuEI	CTTGAG	4 cut(s)	65, 157, 289, 380
BsaBI	GATNNNNATC	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	570, 578
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 447
Bse1I	ACTGG	3 cut(s)	328, 606, 663
Bse8I	GATNNNNATC	1 cut(s)	38
BseDI	CCNNGG	2 cut(s)	570, 578
BseGI	GGATG	5 cut(s)	94, 128, 522, 558, 610
BseJI	GATNNNNATC	1 cut(s)	38
BseLI	CCNNNNNNNGG	2 cut(s)	293, 447
BseMII	CTCAG	2 cut(s)	369, 508
BseNI	ACTGG	3 cut(s)	328, 606, 663
BseXI	GCAGC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	313
BslFI	GGGAC	1 cut(s)	588
BslI	CCNNNNNNNGG	2 cut(s)	293, 447
BsmAI	GTCTC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	588
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	5 cut(s)	134, 168, 431, 655, 682
BspACI	CCGC	1 cut(s)	94
BspCNI	CTCAG	2 cut(s)	370, 507
BspLI	GGNNCC	1 cut(s)	576
BspMAI	CTGCAG	1 cut(s)	340
BspPI	GGATC	2 cut(s)	142, 439
BspTI	CTTAAG	1 cut(s)	631
BsrBI	CCGCTC	1 cut(s)	94
BsrI	ACTGG	3 cut(s)	328, 606, 663
BssECI	CCNNGG	2 cut(s)	570, 578
BssMI	GATC	5 cut(s)	134, 168, 431, 655, 682
BssSI	CACGAG	2 cut(s)	369, 691
BssT1I	CCWWGG	2 cut(s)	570, 578
Bst2BI	CACGAG	2 cut(s)	369, 691
Bst4CI	ACNGT	2 cut(s)	243, 349
BstAFI	CTTAAG	1 cut(s)	631
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	2 cut(s)	378, 494
BstF5I	GGATG	5 cut(s)	94, 128, 522, 558, 610
BstKTI	GATC	5 cut(s)	137, 171, 434, 658, 685
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	5 cut(s)	134, 168, 431, 655, 682
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstPAI	GACNNNNGTC	1 cut(s)	580
BstSFI	CTRYAG	1 cut(s)	336
BstV1I	GCAGC	1 cut(s)	350
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
BtsCI	GGATG	5 cut(s)	94, 128, 522, 558, 610
BtsIMutI	CAGTG	1 cut(s)	670
Cac8I	GCNNGC	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	575, 582
Csp6I	GTAC	1 cut(s)	564
CviAII	CATG	1 cut(s)	586
CviJI	RGCY	6 cut(s)	166, 179, 231, 341, 545, 712
CviKI_1	RGCY	6 cut(s)	166, 179, 231, 341, 545, 712
CviQI	GTAC	1 cut(s)	564
DdeI	CTNAG	2 cut(s)	378, 494
DpnI	GATC	5 cut(s)	136, 170, 433, 657, 684
DpnII	GATC	5 cut(s)	134, 168, 431, 655, 682
Eco130I	CCWWGG	2 cut(s)	570, 578
Eco47I	GGWCC	2 cut(s)	575, 582
EcoRI	GAATTC	1 cut(s)	127
EcoT14I	CCWWGG	2 cut(s)	570, 578
ErhI	CCWWGG	2 cut(s)	570, 578
FaeI	CATG	1 cut(s)	589
FaqI	GGGAC	1 cut(s)	588
FatI	CATG	1 cut(s)	585
FbaI	TGATCA	1 cut(s)	682
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	5 cut(s)	101, 135, 529, 545, 617
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	2 cut(s)	192, 609
GluI	GCNGC	1 cut(s)	339
Hin1II	CATG	1 cut(s)	589
HinfI	GANTC	2 cut(s)	374, 469
Hpy166II	GTNNAC	2 cut(s)	638, 668
Hpy188I	TCNGA	4 cut(s)	16, 61, 379, 405
Hpy188III	TCNNGA	6 cut(s)	132, 147, 174, 269, 371, 463
Hpy8I	GTNNAC	2 cut(s)	638, 668
HpyCH4III	ACNGT	2 cut(s)	243, 349
HpyCH4IV	ACGT	1 cut(s)	524
HpyCH4V	TGCA	5 cut(s)	66, 162, 338, 488, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	2 cut(s)	378, 494
HpySE526I	ACGT	1 cut(s)	524
Hsp92II	CATG	1 cut(s)	589
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	5 cut(s)	134, 168, 431, 655, 682
LpnPI	CCDG	7 cut(s)	117, 132, 148, 309, 481, 587, 676
Lsp1109I	GCAGC	1 cut(s)	350
LweI	GCATC	2 cut(s)	585, 595
MaeI	CTAG	2 cut(s)	192, 609
MaeII	ACGT	1 cut(s)	524
MaeIII	GTNAC	2 cut(s)	299, 364
MalI	GATC	5 cut(s)	136, 170, 433, 657, 684
MbiI	CCGCTC	1 cut(s)	94
MboI	GATC	5 cut(s)	134, 168, 431, 655, 682
MboII	GAAGA	2 cut(s)	218, 266
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	6 cut(s)	18, 54, 127, 280, 500, 642
MlyI	GAGTC	1 cut(s)	463
MnlI	CCTC	4 cut(s)	97, 290, 608, 687
MseI	TTAA	6 cut(s)	38, 99, 389, 425, 590, 632
MspCI	CTTAAG	1 cut(s)	631
MwoI	GCNNNNNNNGC	1 cut(s)	518
NdeII	GATC	5 cut(s)	134, 168, 431, 655, 682
NlaIII	CATG	1 cut(s)	589
NlaIV	GGNNCC	1 cut(s)	576
PfeI	GAWTC	1 cut(s)	374
PflMI	CCANNNNNTGG	2 cut(s)	293, 447
PkrI	GCNGC	1 cut(s)	340
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
PshAI	GACNNNNGTC	1 cut(s)	580
PsiI	TTATAA	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	2 cut(s)	575, 582
PstI	CTGCAG	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	655
RsaI	GTAC	1 cut(s)	565
RsaNI	GTAC	1 cut(s)	564
SaqAI	TTAA	6 cut(s)	38, 99, 389, 425, 590, 632
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	5 cut(s)	134, 168, 431, 655, 682
Sau96I	GGNCC	2 cut(s)	575, 582
SchI	GAGTC	1 cut(s)	463
SduI	GDGCHC	1 cut(s)	313
SfaNI	GCATC	2 cut(s)	585, 595
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	2 cut(s)	575, 582
SmlI	CTYRAG	5 cut(s)	44, 172, 304, 395, 631
SmoI	CTYRAG	5 cut(s)	44, 172, 304, 395, 631
Sse9I	AATT	6 cut(s)	18, 54, 127, 280, 500, 642
SsiI	CCGC	1 cut(s)	94
SspI	AATATT	2 cut(s)	116, 275
SspMI	CTAG	2 cut(s)	192, 609
StyI	CCWWGG	2 cut(s)	570, 578
TaaI	ACNGT	2 cut(s)	243, 349
TaiI	ACGT	1 cut(s)	527
TasI	AATT	6 cut(s)	18, 54, 127, 280, 500, 642
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	6 cut(s)	38, 99, 389, 425, 590, 632
Tru9I	TTAA	6 cut(s)	38, 99, 389, 425, 590, 632
TscAI	CASTG	1 cut(s)	670
TseI	GCWGC	1 cut(s)	338
TspDTI	ATGAA	5 cut(s)	17, 219, 236, 267, 741
TspGWI	ACGGA	1 cut(s)	551
TspRI	CASTG	1 cut(s)	670
Van91I	CCANNNNNTGG	2 cut(s)	293, 447
Vha464I	CTTAAG	1 cut(s)	631
VpaK11BI	GGWCC	2 cut(s)	575, 582
XapI	RAATTY	3 cut(s)	54, 127, 642
XspI	CTAG	2 cut(s)	192, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.