Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005863

Physical Location & Seq

Genomic Coordinates Reverse (-)

18651640 .. 18656945

Gene Structure 5306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00097430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAAGGCTTCAGCAGCAGCAACCTTGAACCATCCCATTCGTCTCCACCCATCACCCATTTCCCGCCAAATCGACTTCCCGGCTCGGCGGTCTCAACCTCTCGCACACAACTCCGGCAAAGGGTTGAAATTGTACCGAAATGAGTCTGTGTGCTCCGTTTCTAGTGTAATTTGTGCTGTCAATGGAGGTCAGGGAGGGTATGTCTCTGCGTGGGACGAGAAACCATATGAGCTTCTTCCGAATGGGAAAAGGGCTTACTTGGATGAACAAGATGTGGTCACGTTCCTTGATCCTCCTAAAGAGTTGATTCCTTTGGACTCGGCTTCTTATAATCCTGCTGCATATCTTTGGAAAAAAATCGATGATATTCCCCAGGAAAGGCGCCGTCGGCTGCTGCGCTTGCTAGAGCCTAGGAAATTGATGGATGGTAATTCAGGATCGTTGATGTCTGGAAAATGGTTATGCAGGCTGATCTCAAGAGCTTGGGAGATAGCTGGCACACGATATGAAGAACCCAAGTTAATGAACAGAAGCTCATCTCAACTGTTGTCTAATGAAGATGGTGTCTCTCTTGAATATTATAATTGCCGAACAAGTGGAGGACCAATGCTCATTTCTTGGATAAACTTTTTCAAAATGGCAATTTTTTCTTGCAAGGATGGGAACGTATATGGACGATTTATTGGTGAAACAATTCTTAATGGACTTGCAAATTCCTTTAGTCCACTGTACTTCGTAGTGAGCCAGCTGAAGGAAGTAATGCCAACTGAACAACCTTGTGATCTAGCATATGAGTTCGGGGATGGGCTGTTTGATCTCCATGAATACCCCGAGGGCTTTCCAAGACCAGTGAAACATCCGTATCCTTTCAACGATCAGGTGGTTGTCTATGTTCGTCATCTAGGACCAGGCGTGTCAGTAGGGCAAGCATGGCAAGAAGGAAAAGCATTACAACAAGTACCACAGAAATTATGTGGTGACATTCTAATGGTGAAAGATTATTCTACTCTTAGAGAAGATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

38.44

Weight (kDa)

7.57

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73090 AT1G73090
fragaria_vesca	FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290
malus_domestica	MD09G1158700.v1.1
prunus_persica	Prupe.3G167100_v2.0.a1 Prupe.3G167100_v2.0.a1
pyrus_communis	pycom09g07730
rosa_chinensis	RchiOBHm_Chr1g0381181 RchiOBHm_Chr2g0150121
rosa_laevigata	RLG00000020468
rosa_multiflora	Rmu_sc0000156.1_g000009 Rmu_sc0009445.1_g000003
rosa_roxburghii	Rroxscaffold_2G00097430
rosa_rugosa	Rorug02G0419300
rosa_samantha	Rh1AG306600 Rh1CG035500 Rh2AG477900 Rh2BG490500 Rh2CG464100 Rh2DG499300 Rh4AG247100 Rh5DG267800
rosa_wichuraiana	Rw2G039010 Rw5G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	330, 582
AccB1I	GGYRCC	1 cut(s)	381
AciI	CCGC	2 cut(s)	64, 88
AclWI	GGATC	2 cut(s)	284, 445
AcsI	RAATTY	1 cut(s)	712
AcuI	CTGAAG	1 cut(s)	770
AcyI	GRCGYC	1 cut(s)	382
AfaI	GTAC	3 cut(s)	134, 731, 960
AfiI	CCNNNNNNNGG	3 cut(s)	120, 378, 751
AgsI	TTSAA	5 cut(s)	28, 127, 575, 634, 871
AjnI	CCWGG	2 cut(s)	372, 907
AjuI	GAANNNNNNNTTGG	2 cut(s)	598, 630
AluBI	AGCT	5 cut(s)	232, 482, 494, 534, 748
AluI	AGCT	5 cut(s)	232, 482, 494, 534, 748
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	4 cut(s)	47, 96, 208, 571
AlwI	GGATC	2 cut(s)	284, 445
Ama87I	CYCGRG	1 cut(s)	830
ApeKI	GCWGC	5 cut(s)	14, 17, 338, 391, 394
ApoI	RAATTY	1 cut(s)	712
Asp700I	GAANNNNTTC	1 cut(s)	693
AspA2I	CCTAGG	1 cut(s)	410
AspLEI	GCGC	2 cut(s)	384, 399
AspS9I	GGNCC	2 cut(s)	602, 905
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	4 cut(s)	45, 698, 989, 1003
AvaI	CYCGRG	1 cut(s)	830
AvaII	GGWCC	2 cut(s)	602, 905
AvrII	CCTAGG	1 cut(s)	410
BaeI	ACNNNNGTAYC	2 cut(s)	845, 878
BanI	GGYRCC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	5 cut(s)	26, 29, 325, 378, 381
BccI	CCATC	7 cut(s)	39, 58, 415, 419, 554, 653, 797
BceAI	ACGGC	1 cut(s)	369
BciT130I	CCWGG	2 cut(s)	374, 909
BciVI	GTATCC	1 cut(s)	873
BcnI	CCSGG	1 cut(s)	80
BcoDI	GTCTC	4 cut(s)	47, 96, 208, 571
BfaI	CTAG	5 cut(s)	162, 404, 411, 785, 902
BfoI	RGCGCY	1 cut(s)	385
BfuI	GTATCC	1 cut(s)	873
BisI	GCNGC	5 cut(s)	15, 18, 339, 392, 395
BlnI	CCTAGG	1 cut(s)	410
BlsI	GCNGC	5 cut(s)	16, 19, 340, 393, 396
Bme1390I	CCNGG	3 cut(s)	80, 374, 909
Bme18I	GGWCC	2 cut(s)	602, 905
BmeT110I	CYCGRG	1 cut(s)	830
BmgT120I	GGNCC	2 cut(s)	602, 905
BmiI	GGNNCC	1 cut(s)	383
BmrFI	CCNGG	3 cut(s)	80, 374, 909
BpuEI	CTTGAG	1 cut(s)	460
BpuMI	CCSGG	1 cut(s)	80
Bsa29I	ATCGAT	1 cut(s)	360
BsaHI	GRCGYC	1 cut(s)	382
BsaI	GGTCTC	1 cut(s)	96
BsaJI	CCNNGG	3 cut(s)	372, 410, 831
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 378, 751
Bse1I	ACTGG	1 cut(s)	848
BseBI	CCWGG	2 cut(s)	374, 909
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	3 cut(s)	372, 410, 831
BseGI	GGATG	6 cut(s)	31, 268, 430, 664, 808, 856
BseLI	CCNNNNNNNGG	3 cut(s)	120, 378, 751
BseNI	ACTGG	1 cut(s)	848
BseXI	GCAGC	5 cut(s)	26, 29, 325, 378, 381
BshNI	GGYRCC	1 cut(s)	381
BshVI	ATCGAT	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	155
BsiHKCI	CYCGRG	1 cut(s)	830
BsiSI	CCGG	2 cut(s)	80, 114
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	3 cut(s)	120, 378, 751
BsmAI	GTCTC	4 cut(s)	47, 96, 208, 571
BsmBI	CGTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	227
Bso31I	GGTCTC	1 cut(s)	96
BsoBI	CYCGRG	1 cut(s)	830
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp143I	GATC	7 cut(s)	289, 437, 471, 781, 814, 874, 1018
BspACI	CCGC	2 cut(s)	64, 88
BspDI	ATCGAT	1 cut(s)	360
BspLI	GGNNCC	1 cut(s)	383
BspPI	GGATC	2 cut(s)	284, 445
BspT107I	GGYRCC	1 cut(s)	381
BspTNI	GGTCTC	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	848
BssECI	CCNNGG	3 cut(s)	372, 410, 831
BssMI	GATC	7 cut(s)	289, 437, 471, 781, 814, 874, 1018
BssNI	GRCGYC	1 cut(s)	382
BssT1I	CCWWGG	1 cut(s)	410
Bst2UI	CCWGG	2 cut(s)	374, 909
Bst4CI	ACNGT	2 cut(s)	546, 729
BstACI	GRCGYC	1 cut(s)	382
BstC8I	GCNNGC	5 cut(s)	401, 467, 496, 746, 927
BstDEI	CTNAG	1 cut(s)	1010
BstF5I	GGATG	6 cut(s)	31, 268, 430, 664, 808, 856
BstH2I	RGCGCY	1 cut(s)	385
BstHHI	GCGC	2 cut(s)	384, 399
BstKTI	GATC	7 cut(s)	292, 440, 474, 784, 817, 877, 1021
BstMAI	GTCTC	4 cut(s)	47, 96, 208, 571
BstMBI	GATC	7 cut(s)	289, 437, 471, 781, 814, 874, 1018
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 388, 400, 931
BstNI	CCWGG	2 cut(s)	374, 909
BstSCI	CCNGG	3 cut(s)	78, 372, 907
BstV1I	GCAGC	5 cut(s)	26, 29, 325, 378, 381
Bsu15I	ATCGAT	1 cut(s)	360
BsuI	GTATCC	1 cut(s)	873
BsuTUI	ATCGAT	1 cut(s)	360
BtsCI	GGATG	6 cut(s)	31, 268, 430, 664, 808, 856
BtsIMutI	CAGTG	2 cut(s)	725, 855
Cac8I	GCNNGC	5 cut(s)	401, 467, 496, 746, 927
CfoI	GCGC	2 cut(s)	384, 399
Cfr13I	GGNCC	2 cut(s)	602, 905
ClaI	ATCGAT	1 cut(s)	360
Csp6I	GTAC	3 cut(s)	133, 730, 959
CviAII	CATG	2 cut(s)	821, 930
CviQI	GTAC	3 cut(s)	133, 730, 959
DdeI	CTNAG	1 cut(s)	1010
DinI	GGCGCC	1 cut(s)	383
DpnI	GATC	7 cut(s)	291, 439, 473, 783, 816, 876, 1020
DpnII	GATC	7 cut(s)	289, 437, 471, 781, 814, 874, 1018
Eco130I	CCWWGG	1 cut(s)	410
Eco31I	GGTCTC	1 cut(s)	96
Eco47I	GGWCC	2 cut(s)	602, 905
Eco57I	CTGAAG	1 cut(s)	770
Eco88I	CYCGRG	1 cut(s)	830
EcoRII	CCWGG	2 cut(s)	372, 907
EcoT14I	CCWWGG	1 cut(s)	410
EgeI	GGCGCC	1 cut(s)	383
EheI	GGCGCC	1 cut(s)	383
ErhI	CCWWGG	1 cut(s)	410
Esp3I	CGTCTC	1 cut(s)	47
FaeI	CATG	2 cut(s)	824, 933
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	2 cut(s)	820, 929
FauI	CCCGC	1 cut(s)	71
FauNDI	CATATG	2 cut(s)	226, 790
Fnu4HI	GCNGC	5 cut(s)	15, 18, 339, 392, 395
FokI	GGATG	6 cut(s)	18, 275, 437, 671, 815, 843
Fsp4HI	GCNGC	5 cut(s)	15, 18, 339, 392, 395
FspBI	CTAG	5 cut(s)	162, 404, 411, 785, 902
GlaI	GCGC	2 cut(s)	383, 398
GluI	GCNGC	5 cut(s)	15, 18, 339, 392, 395
HaeII	RGCGCY	1 cut(s)	385
HapII	CCGG	2 cut(s)	80, 114
HhaI	GCGC	2 cut(s)	384, 399
Hin1I	GRCGYC	1 cut(s)	382
Hin1II	CATG	2 cut(s)	824, 933
Hin6I	GCGC	2 cut(s)	382, 397
HinP1I	GCGC	2 cut(s)	382, 397
HinfI	GANTC	3 cut(s)	143, 307, 317
HpaII	CCGG	2 cut(s)	80, 114
HphI	GGTGA	4 cut(s)	45, 698, 989, 1003
Hpy166II	GTNNAC	1 cut(s)	725
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	4 cut(s)	435, 450, 477, 572
Hpy8I	GTNNAC	1 cut(s)	725
Hpy99I	CGWCG	1 cut(s)	390
HpyAV	CCTTC	2 cut(s)	745, 932
HpyCH4III	ACNGT	2 cut(s)	546, 729
HpyCH4IV	ACGT	2 cut(s)	281, 666
HpyCH4V	TGCA	4 cut(s)	341, 465, 654, 710
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 388, 400, 931
HpyF3I	CTNAG	1 cut(s)	1010
HpySE526I	ACGT	2 cut(s)	281, 666
Hsp92I	GRCGYC	1 cut(s)	382
Hsp92II	CATG	2 cut(s)	824, 933
HspAI	GCGC	2 cut(s)	382, 397
KasI	GGCGCC	1 cut(s)	381
Kzo9I	GATC	7 cut(s)	289, 437, 471, 781, 814, 874, 1018
LmnI	GCTCC	1 cut(s)	158
Lsp1109I	GCAGC	5 cut(s)	26, 29, 325, 378, 381
MaeI	CTAG	5 cut(s)	162, 404, 411, 785, 902
MaeII	ACGT	2 cut(s)	281, 666
MaeIII	GTNAC	2 cut(s)	277, 977
MalI	GATC	7 cut(s)	291, 439, 473, 783, 816, 876, 1020
MboI	GATC	7 cut(s)	289, 437, 471, 781, 814, 874, 1018
MboII	GAAGA	3 cut(s)	227, 521, 569
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	9 cut(s)	128, 168, 416, 430, 583, 642, 693, 712, 968
Mly113I	GGCGCC	1 cut(s)	382
MlyI	GAGTC	2 cut(s)	152, 311
MnlI	CCTC	6 cut(s)	108, 179, 188, 303, 593, 826
MroXI	GAANNNNTTC	1 cut(s)	693
MseI	TTAA	2 cut(s)	521, 699
MslI	CAYNNNNRTG	1 cut(s)	986
MspA1I	CMGCKG	1 cut(s)	748
MspI	CCGG	2 cut(s)	80, 114
MspR9I	CCNGG	3 cut(s)	80, 374, 909
MvaI	CCWGG	2 cut(s)	374, 909
MwoI	GCNNNNNNNGC	4 cut(s)	14, 388, 400, 931
NarI	GGCGCC	1 cut(s)	382
NciI	CCSGG	1 cut(s)	80
NdeI	CATATG	2 cut(s)	226, 790
NdeII	GATC	7 cut(s)	289, 437, 471, 781, 814, 874, 1018
NlaIII	CATG	2 cut(s)	824, 933
NlaIV	GGNNCC	1 cut(s)	383
NmeAIII	GCCGAG	2 cut(s)	64, 299
NmuCI	GTSAC	2 cut(s)	277, 977
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	5 cut(s)	16, 19, 340, 393, 396
PleI	GAGTC	2 cut(s)	151, 311
PluTI	GGCGCC	1 cut(s)	385
PpsI	GAGTC	2 cut(s)	151, 311
PsiI	TTATAA	2 cut(s)	330, 582
Psp6I	CCWGG	2 cut(s)	372, 907
PspGI	CCWGG	2 cut(s)	372, 907
PspN4I	GGNNCC	1 cut(s)	383
PspPI	GGNCC	2 cut(s)	602, 905
PvuII	CAGCTG	1 cut(s)	748
RsaI	GTAC	3 cut(s)	134, 731, 960
RsaNI	GTAC	3 cut(s)	133, 730, 959
RseI	CAYNNNNRTG	1 cut(s)	986
SaqAI	TTAA	2 cut(s)	521, 699
SatI	GCNGC	5 cut(s)	15, 18, 339, 392, 395
Sau3AI	GATC	7 cut(s)	289, 437, 471, 781, 814, 874, 1018
Sau96I	GGNCC	2 cut(s)	602, 905
SchI	GAGTC	2 cut(s)	152, 311
ScrFI	CCNGG	3 cut(s)	80, 374, 909
SduI	GDGCHC	1 cut(s)	155
SfoI	GGCGCC	1 cut(s)	383
SinI	GGWCC	2 cut(s)	602, 905
SmiMI	CAYNNNNRTG	1 cut(s)	986
SmlI	CTYRAG	1 cut(s)	475
SmoI	CTYRAG	1 cut(s)	475
Sse9I	AATT	9 cut(s)	128, 168, 416, 430, 583, 642, 693, 712, 968
SsiI	CCGC	2 cut(s)	64, 88
SspDI	GGCGCC	1 cut(s)	381
SspI	AATATT	1 cut(s)	578
SspMI	CTAG	5 cut(s)	162, 404, 411, 785, 902
StyD4I	CCNGG	3 cut(s)	78, 372, 907
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	2 cut(s)	546, 729
TaiI	ACGT	2 cut(s)	284, 669
TaqI	TCGA	2 cut(s)	72, 360
TasI	AATT	9 cut(s)	128, 168, 416, 430, 583, 642, 693, 712, 968
TatI	WGTACW	1 cut(s)	729
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	2 cut(s)	521, 699
Tru9I	TTAA	2 cut(s)	521, 699
TscAI	CASTG	2 cut(s)	732, 855
TseFI	GTSAC	2 cut(s)	277, 977
TseI	GCWGC	5 cut(s)	14, 17, 338, 391, 394
Tsp45I	GTSAC	2 cut(s)	277, 977
TspDTI	ATGAA	6 cut(s)	17, 279, 522, 539, 570, 837
TspGWI	ACGGA	2 cut(s)	145, 849
TspRI	CASTG	2 cut(s)	732, 855
VpaK11BI	GGWCC	2 cut(s)	602, 905
XapI	RAATTY	1 cut(s)	712
XmaJI	CCTAGG	1 cut(s)	410
XmnI	GAANNNNTTC	1 cut(s)	693
XspI	CTAG	5 cut(s)	162, 404, 411, 785, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.