RchiOBHm_Chr1g0381181

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005863
Physical Location & Seq
Reverse (-)
66535091 .. 66539296
4206 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60438

Sequence Viewer

Length: 831 bp
ATGCAGAAGAAATGGGTTAGTGAACCAAGAGTAGGGTTTAAATTGTACAGAAATGAGTCTGTGCACTCTGCTTGTAGTGTAATTTGTGCTGTCAATGGAGGCCAGGGAGGGTATGTCTCTGCGTGGGTCGAGAAACCATATGAGTTTCTTCCGAATGGGAAAAGGGCTTACTTGGATGAACAAGATGTGGTCACGTTCCTCAATCCTCCTAAAGAGTTGATTCCTTTGGACTCGCTTCTTATAATCCTGCTGCATGTCTTTGGTCAGAAAAAAATTGATGATATTCCCCAGGAAAGGTGCCGTCGGCTGCTGCACTTGCTAGAGCCTAAGCTGATCTCAAGAGCTTGGGAGATACCTAGCACACGATATGAAGAACCCAAGTTGATGAACAGAAGCTCATTTCAACTGTTGTCTAATGAAGATGGTGTCTCTCTTGAATATTATAATTGCCCAACAAGTGGAGGTAACTCAAGTGCTCACTATTATACTGGTGTAGTTTCTGCAGCTCTCACAGTTTGGGGTTATAGAGTAACTCGTGATTCTGAGCAATTTTTCCTTGCAAGGATGGCAACGTATATGGACGATTTATTGGCTGTTGCTGACATCATCCGTACAACCTTGGGACCAAGGTCCATGTTAAAGATGCTACTGGATGCTAGTGGAGGCAATCCTTTTGCCTTAAGTGGACAAATTTTACTGTATTTATCTGTGTCTAGCCTCTGGCCATATGAAGCTGCTGCTGTAGCTTTTGAGGCTATACCACGAACATTGGCTCAGAACTGTGGGGTTAATGTCATTAGAACGATGACAGCGCTGCAAGGAAAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

30.88

Weight (kDa)

7.61

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 242, 444
AccB1I GGYRCC 1 cut(s) 297
AccB7I CCANNNNNTGG 1 cut(s) 458
AcoI YGGCCR 1 cut(s) 722
AcsI RAATTY 1 cut(s) 690
AfaI GTAC 2 cut(s) 47, 613
AfeI AGCGCT 1 cut(s) 813
AfiI CCNNNNNNNGG 3 cut(s) 32, 294, 458
AflII CTTAAG 1 cut(s) 679
AgsI TTSAA 2 cut(s) 404, 437
AjnI CCWGG 2 cut(s) 102, 288
AluBI AGCT 6 cut(s) 331, 344, 396, 506, 734, 746
AluI AGCT 6 cut(s) 331, 344, 396, 506, 734, 746
Alw21I GWGCWC 2 cut(s) 66, 478
Alw26I GTCTC 2 cut(s) 121, 433
Alw44I GTGCAC 1 cut(s) 62
Aor51HI AGCGCT 1 cut(s) 813
AoxI GGCC 2 cut(s) 100, 722
ApaLI GTGCAC 1 cut(s) 62
ApeKI GCWGC 7 cut(s) 250, 307, 310, 503, 734, 737, 814
ApoI RAATTY 1 cut(s) 690
AspLEI GCGC 1 cut(s) 814
AspS9I GGNCC 2 cut(s) 623, 630
AvaII GGWCC 2 cut(s) 623, 630
BaeGI GKGCMC 1 cut(s) 66
BalI TGGCCA 1 cut(s) 724
BanI GGYRCC 1 cut(s) 297
BauI CACGAG 1 cut(s) 534
Bbv12I GWGCWC 2 cut(s) 66, 478
BbvI GCAGC 7 cut(s) 237, 294, 297, 515, 721, 724, 801
BccI CCATC 2 cut(s) 416, 559
BceAI ACGGC 1 cut(s) 285
BciT130I CCWGG 2 cut(s) 104, 290
BcoDI GTCTC 2 cut(s) 121, 433
BfaI CTAG 4 cut(s) 320, 357, 657, 714
BfmI CTRYAG 2 cut(s) 501, 741
BfoI RGCGCY 1 cut(s) 815
BfrI CTTAAG 1 cut(s) 679
BisI GCNGC 7 cut(s) 251, 308, 311, 504, 735, 738, 815
BlsI GCNGC 7 cut(s) 252, 309, 312, 505, 736, 739, 816
Bme1390I CCNGG 2 cut(s) 104, 290
Bme18I GGWCC 2 cut(s) 623, 630
BmgT120I GGNCC 2 cut(s) 623, 630
BmiI GGNNCC 2 cut(s) 299, 624
BmrFI CCNGG 2 cut(s) 104, 290
BmsI GCATC 2 cut(s) 633, 643
BoxI GACNNNNGTC 1 cut(s) 628
Bpu10I CCTNAGC 1 cut(s) 327
BpuEI CTTGAG 2 cut(s) 322, 454
BsaJI CCNNGG 4 cut(s) 103, 288, 618, 626
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 294, 458
Bse1I ACTGG 2 cut(s) 493, 654
BseBI CCWGG 2 cut(s) 104, 290
BseDI CCNNGG 4 cut(s) 103, 288, 618, 626
BseGI GGATG 4 cut(s) 181, 570, 606, 658
BseLI CCNNNNNNNGG 3 cut(s) 32, 294, 458
BseMII CTCAG 2 cut(s) 534, 788
BseNI ACTGG 2 cut(s) 493, 654
BseSI GKGCMC 1 cut(s) 66
BseXI GCAGC 7 cut(s) 237, 294, 297, 515, 721, 724, 801
BsgI GTGCAG 1 cut(s) 296
BshFI GGCC 2 cut(s) 102, 724
BshNI GGYRCC 1 cut(s) 297
BsiHKAI GWGCWC 2 cut(s) 66, 478
BslFI GGGAC 1 cut(s) 636
BslI CCNNNNNNNGG 3 cut(s) 32, 294, 458
BsmAI GTCTC 2 cut(s) 121, 433
BsmFI GGGAC 1 cut(s) 636
BsnI GGCC 2 cut(s) 102, 724
Bsp1286I GDGCHC 2 cut(s) 66, 478
Bsp1407I TGTACA 1 cut(s) 45
Bsp143I GATC 1 cut(s) 333
BspANI GGCC 2 cut(s) 102, 724
BspCNI CTCAG 2 cut(s) 535, 787
BspLI GGNNCC 2 cut(s) 299, 624
BspMAI CTGCAG 1 cut(s) 505
BspT107I GGYRCC 1 cut(s) 297
BspTI CTTAAG 1 cut(s) 679
BsrGI TGTACA 1 cut(s) 45
BsrI ACTGG 2 cut(s) 493, 654
BssECI CCNNGG 4 cut(s) 103, 288, 618, 626
BssMI GATC 1 cut(s) 333
BssSI CACGAG 1 cut(s) 534
BssT1I CCWWGG 2 cut(s) 618, 626
Bst2BI CACGAG 1 cut(s) 534
Bst2UI CCWGG 2 cut(s) 104, 290
Bst4CI ACNGT 4 cut(s) 408, 514, 699, 782
BstAFI CTTAAG 1 cut(s) 679
BstAUI TGTACA 1 cut(s) 45
BstDEI CTNAG 3 cut(s) 327, 543, 774
BstF5I GGATG 4 cut(s) 181, 570, 606, 658
BstH2I RGCGCY 1 cut(s) 815
BstHHI GCGC 1 cut(s) 814
BstKTI GATC 1 cut(s) 336
BstMAI GTCTC 2 cut(s) 121, 433
BstMBI GATC 1 cut(s) 333
BstMWI GCNNNNNNNGC 4 cut(s) 316, 566, 743, 752
BstNI CCWGG 2 cut(s) 104, 290
BstNSI RCATGY 1 cut(s) 257
BstPAI GACNNNNGTC 1 cut(s) 628
BstSCI CCNGG 2 cut(s) 102, 288
BstSFI CTRYAG 2 cut(s) 501, 741
BstSLI GKGCMC 1 cut(s) 66
BstV1I GCAGC 7 cut(s) 237, 294, 297, 515, 721, 724, 801
BsuRI GGCC 2 cut(s) 102, 724
BtsCI GGATG 4 cut(s) 181, 570, 606, 658
CfoI GCGC 1 cut(s) 814
Cfr13I GGNCC 2 cut(s) 623, 630
Csp6I GTAC 2 cut(s) 46, 612
CspCI CAANNNNNGTGG 2 cut(s) 750, 785
CviAII CATG 2 cut(s) 254, 634
CviQI GTAC 2 cut(s) 46, 612
DdeI CTNAG 3 cut(s) 327, 543, 774
DpnI GATC 1 cut(s) 335
DpnII GATC 1 cut(s) 333
DraI TTTAAA 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 722
Eco130I CCWWGG 2 cut(s) 618, 626
Eco47I GGWCC 2 cut(s) 623, 630
Eco47III AGCGCT 1 cut(s) 813
EcoRII CCWGG 2 cut(s) 102, 288
EcoT14I CCWWGG 2 cut(s) 618, 626
ErhI CCWWGG 2 cut(s) 618, 626
FaeI CATG 2 cut(s) 257, 637
FaqI GGGAC 1 cut(s) 636
FatI CATG 2 cut(s) 253, 633
FauNDI CATATG 2 cut(s) 139, 727
Fnu4HI GCNGC 7 cut(s) 251, 308, 311, 504, 735, 738, 815
FokI GGATG 4 cut(s) 188, 577, 593, 665
Fsp4HI GCNGC 7 cut(s) 251, 308, 311, 504, 735, 738, 815
FspBI CTAG 4 cut(s) 320, 357, 657, 714
GlaI GCGC 1 cut(s) 813
GluI GCNGC 7 cut(s) 251, 308, 311, 504, 735, 738, 815
HaeII RGCGCY 1 cut(s) 815
HaeIII GGCC 2 cut(s) 102, 724
HhaI GCGC 1 cut(s) 814
Hin1II CATG 2 cut(s) 257, 637
Hin6I GCGC 1 cut(s) 812
HinP1I GCGC 1 cut(s) 812
HinfI GANTC 4 cut(s) 56, 220, 230, 539
Hpy166II GTNNAC 3 cut(s) 23, 64, 686
Hpy188I TCNGA 4 cut(s) 153, 267, 544, 777
Hpy188III TCNNGA 4 cut(s) 130, 339, 434, 536
Hpy8I GTNNAC 3 cut(s) 23, 64, 686
Hpy99I CGWCG 1 cut(s) 306
HpyCH4III ACNGT 4 cut(s) 408, 514, 699, 782
HpyCH4IV ACGT 2 cut(s) 194, 572
HpyCH4V TGCA 7 cut(s) 4, 64, 253, 313, 503, 560, 817
HpyF10VI GCNNNNNNNGC 4 cut(s) 316, 566, 743, 752
HpyF3I CTNAG 3 cut(s) 327, 543, 774
HpySE526I ACGT 2 cut(s) 194, 572
Hsp92II CATG 2 cut(s) 257, 637
HspAI GCGC 1 cut(s) 812
Kzo9I GATC 1 cut(s) 333
LpnPI CCDG 8 cut(s) 89, 116, 260, 275, 302, 474, 635, 706
Lsp1109I GCAGC 7 cut(s) 237, 294, 297, 515, 721, 724, 801
LweI GCATC 2 cut(s) 633, 643
MaeI CTAG 4 cut(s) 320, 357, 657, 714
MaeII ACGT 2 cut(s) 194, 572
MaeIII GTNAC 3 cut(s) 190, 464, 529
MalI GATC 1 cut(s) 335
MboI GATC 1 cut(s) 333
MboII GAAGA 4 cut(s) 19, 140, 383, 431
MhlI GDGCHC 2 cut(s) 66, 478
MlsI TGGCCA 1 cut(s) 724
MluCI AATT 6 cut(s) 41, 81, 273, 445, 548, 690
MluNI TGGCCA 1 cut(s) 724
MlyI GAGTC 2 cut(s) 65, 224
MnlI CCTC 8 cut(s) 92, 101, 209, 216, 455, 656, 728, 745
Mox20I TGGCCA 1 cut(s) 724
MscI TGGCCA 1 cut(s) 724
MseI TTAA 4 cut(s) 39, 638, 680, 789
Msp20I TGGCCA 1 cut(s) 724
MspCI CTTAAG 1 cut(s) 679
MspR9I CCNGG 2 cut(s) 104, 290
MvaI CCWGG 2 cut(s) 104, 290
MwoI GCNNNNNNNGC 4 cut(s) 316, 566, 743, 752
NdeI CATATG 2 cut(s) 139, 727
NdeII GATC 1 cut(s) 333
NlaIII CATG 2 cut(s) 257, 637
NlaIV GGNNCC 2 cut(s) 299, 624
NmuCI GTSAC 1 cut(s) 190
NspI RCATGY 1 cut(s) 257
PfeI GAWTC 2 cut(s) 220, 539
PflMI CCANNNNNTGG 1 cut(s) 458
PkrI GCNGC 7 cut(s) 252, 309, 312, 505, 736, 739, 816
PleI GAGTC 2 cut(s) 64, 224
PpsI GAGTC 2 cut(s) 64, 224
PshAI GACNNNNGTC 1 cut(s) 628
PsiI TTATAA 2 cut(s) 242, 444
Psp6I CCWGG 2 cut(s) 102, 288
PspGI CCWGG 2 cut(s) 102, 288
PspN4I GGNNCC 2 cut(s) 299, 624
PspPI GGNCC 2 cut(s) 623, 630
PstI CTGCAG 1 cut(s) 505
RsaI GTAC 2 cut(s) 47, 613
RsaNI GTAC 2 cut(s) 46, 612
SaqAI TTAA 4 cut(s) 39, 638, 680, 789
SatI GCNGC 7 cut(s) 251, 308, 311, 504, 735, 738, 815
Sau3AI GATC 1 cut(s) 333
Sau96I GGNCC 2 cut(s) 623, 630
SchI GAGTC 2 cut(s) 65, 224
ScrFI CCNGG 2 cut(s) 104, 290
SduI GDGCHC 2 cut(s) 66, 478
SfaNI GCATC 2 cut(s) 633, 643
SfcI CTRYAG 2 cut(s) 501, 741
SinI GGWCC 2 cut(s) 623, 630
SmlI CTYRAG 3 cut(s) 337, 469, 679
SmoI CTYRAG 3 cut(s) 337, 469, 679
Sse9I AATT 6 cut(s) 41, 81, 273, 445, 548, 690
SspI AATATT 1 cut(s) 440
SspMI CTAG 4 cut(s) 320, 357, 657, 714
StyD4I CCNGG 2 cut(s) 102, 288
StyI CCWWGG 2 cut(s) 618, 626
TaaI ACNGT 4 cut(s) 408, 514, 699, 782
TaiI ACGT 2 cut(s) 197, 575
TaqI TCGA 1 cut(s) 129
TasI AATT 6 cut(s) 41, 81, 273, 445, 548, 690
TatI WGTACW 1 cut(s) 45
TfiI GAWTC 2 cut(s) 220, 539
Tru1I TTAA 4 cut(s) 39, 638, 680, 789
Tru9I TTAA 4 cut(s) 39, 638, 680, 789
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 7 cut(s) 250, 307, 310, 503, 734, 737, 814
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 5 cut(s) 192, 384, 401, 432, 744
TspGWI ACGGA 1 cut(s) 599
Van91I CCANNNNNTGG 1 cut(s) 458
Vha464I CTTAAG 1 cut(s) 679
VneI GTGCAC 1 cut(s) 62
VpaK11BI GGWCC 2 cut(s) 623, 630
XapI RAATTY 1 cut(s) 690
XceI RCATGY 1 cut(s) 257
XspI CTAG 4 cut(s) 320, 357, 657, 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.