Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005863

Physical Location & Seq

Genomic Coordinates Reverse (-)

55924751 .. 55926425

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG247100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTCTGGACAATGGTTATGCAGGCTGATCTCAAGAGCTTGGGAGATACCTAGCACACGATATGAAGAACCCAAGTTGATGAACAGAAGCTCATTTCAACTGTTGTCTAATGAAGATGGTGTCTCTCTTGAATATTATAATTGCCCAACAAGTGGAGGTAACTCAAGTGCTCACTATTATACTGGTGTAGTTTCTGCAGCTCTCACAGTTTGGGGTTATAGAGTAACTCGTGATTCTGAGTTTCACTTAAATCTCAAGTTTCTGACACTTATTTTCAATCATTTAATAGGATCAATGCCCATTTCTTGGATAAACTTTTTCAAGATGGCTGTTGCTGACATCATCCGTACAACCTTGGGACCAAGGTCCATGTTAAAGATGCTACTGGATGCTAGTGGAGGTAATCCTTTTGCCTTAAGTGGACAAATTTTACTGATTTTGTTTTCGGTGTTAATGCATTTGCATAACTCTAACAAAGTTGTTCTCCTCATTGCTAACAGCATCAAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

19.15

Weight (kDa)

9.2

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73090 AT1G73090
fragaria_vesca	FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290
malus_domestica	MD09G1158700.v1.1
prunus_persica	Prupe.3G167100_v2.0.a1 Prupe.3G167100_v2.0.a1
pyrus_communis	pycom09g07730
rosa_chinensis	RchiOBHm_Chr1g0381181 RchiOBHm_Chr2g0150121
rosa_laevigata	RLG00000020468
rosa_multiflora	Rmu_sc0000156.1_g000009 Rmu_sc0009445.1_g000003
rosa_roxburghii	Rroxscaffold_2G00097430
rosa_rugosa	Rorug02G0419300
rosa_samantha	Rh1AG306600 Rh1CG035500 Rh2AG477900 Rh2BG490500 Rh2CG464100 Rh2DG499300 Rh4AG247100 Rh5DG267800
rosa_wichuraiana	Rw2G039010 Rw5G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	138
AccB7I	CCANNNNNTGG	2 cut(s)	152, 306
AclWI	GGATC	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	426
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	2 cut(s)	152, 306
AflII	CTTAAG	1 cut(s)	415
AgsI	TTSAA	4 cut(s)	98, 131, 277, 322
AluBI	AGCT	3 cut(s)	38, 90, 200
AluI	AGCT	3 cut(s)	38, 90, 200
Alw21I	GWGCWC	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	127
AlwI	GGATC	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	426
AspS9I	GGNCC	2 cut(s)	359, 366
AvaII	GGWCC	2 cut(s)	359, 366
BauI	CACGAG	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	2 cut(s)	110, 319
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	2 cut(s)	51, 393
BfmI	CTRYAG	1 cut(s)	195
BfrI	CTTAAG	1 cut(s)	415
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme18I	GGWCC	2 cut(s)	359, 366
BmgT120I	GGNCC	2 cut(s)	359, 366
BmiI	GGNNCC	1 cut(s)	360
BmsI	GCATC	2 cut(s)	369, 379
BoxI	GACNNNNGTC	1 cut(s)	364
BpuEI	CTTGAG	3 cut(s)	16, 148, 239
BsaJI	CCNNGG	2 cut(s)	354, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 306
Bse1I	ACTGG	2 cut(s)	187, 390
Bse3DI	GCAATG	1 cut(s)	489
BseDI	CCNNGG	2 cut(s)	354, 362
BseGI	GGATG	2 cut(s)	342, 394
BseLI	CCNNNNNNNGG	2 cut(s)	152, 306
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	2 cut(s)	187, 390
BseRI	GAGGAG	1 cut(s)	476
BseXI	GCAGC	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	172
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	2 cut(s)	152, 306
BsmAI	GTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	2 cut(s)	27, 290
BspCNI	CTCAG	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	360
BspMAI	CTGCAG	1 cut(s)	199
BspPI	GGATC	1 cut(s)	298
BspTI	CTTAAG	1 cut(s)	415
BsrDI	GCAATG	1 cut(s)	489
BsrI	ACTGG	2 cut(s)	187, 390
BssECI	CCNNGG	2 cut(s)	354, 362
BssMI	GATC	2 cut(s)	27, 290
BssSI	CACGAG	1 cut(s)	228
BssT1I	CCWWGG	2 cut(s)	354, 362
Bst2BI	CACGAG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	102, 208
BstAFI	CTTAAG	1 cut(s)	415
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	1 cut(s)	237
BstF5I	GGATG	2 cut(s)	342, 394
BstKTI	GATC	2 cut(s)	30, 293
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	2 cut(s)	27, 290
BstPAI	GACNNNNGTC	1 cut(s)	364
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	342, 394
Cac8I	GCNNGC	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	359, 366
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	1 cut(s)	370
CviJI	RGCY	5 cut(s)	25, 38, 90, 200, 329
CviKI_1	RGCY	5 cut(s)	25, 38, 90, 200, 329
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	2 cut(s)	29, 292
DpnII	GATC	2 cut(s)	27, 290
Eco130I	CCWWGG	2 cut(s)	354, 362
Eco47I	GGWCC	2 cut(s)	359, 366
EcoT14I	CCWWGG	2 cut(s)	354, 362
EcoT22I	ATGCAT	1 cut(s)	459
ErhI	CCWWGG	2 cut(s)	354, 362
FaeI	CATG	1 cut(s)	373
FaiI	YATR	7 cut(s)	19, 63, 138, 180, 219, 371, 465
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	1 cut(s)	369
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	2 cut(s)	329, 401
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	2 cut(s)	51, 393
GluI	GCNGC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	373
HinfI	GANTC	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	2 cut(s)	238, 264
Hpy188III	TCNNGA	5 cut(s)	6, 33, 128, 230, 322
Hpy8I	GTNNAC	1 cut(s)	422
HpyCH4III	ACNGT	2 cut(s)	102, 208
HpyCH4V	TGCA	4 cut(s)	21, 197, 457, 463
HpyF3I	CTNAG	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	373
Kzo9I	GATC	2 cut(s)	27, 290
LpnPI	CCDG	3 cut(s)	7, 168, 371
Lsp1109I	GCAGC	1 cut(s)	209
LweI	GCATC	2 cut(s)	369, 379
MaeI	CTAG	2 cut(s)	51, 393
MaeIII	GTNAC	2 cut(s)	158, 223
MalI	GATC	2 cut(s)	29, 292
MboI	GATC	2 cut(s)	27, 290
MboII	GAAGA	2 cut(s)	77, 125
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	2 cut(s)	139, 426
MnlI	CCTC	3 cut(s)	149, 392, 497
Mph1103I	ATGCAT	1 cut(s)	459
MseI	TTAA	5 cut(s)	248, 284, 374, 416, 452
MspCI	CTTAAG	1 cut(s)	415
NdeII	GATC	2 cut(s)	27, 290
NlaIII	CATG	1 cut(s)	373
NlaIV	GGNNCC	1 cut(s)	360
NsiI	ATGCAT	1 cut(s)	459
PfeI	GAWTC	1 cut(s)	233
PflMI	CCANNNNNTGG	2 cut(s)	152, 306
PkrI	GCNGC	1 cut(s)	199
PshAI	GACNNNNGTC	1 cut(s)	364
PsiI	TTATAA	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	360
PspPI	GGNCC	2 cut(s)	359, 366
PstI	CTGCAG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SaqAI	TTAA	5 cut(s)	248, 284, 374, 416, 452
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	2 cut(s)	27, 290
Sau96I	GGNCC	2 cut(s)	359, 366
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	8 cut(s)	40, 52, 92, 160, 202, 356, 368, 403
SfaNI	GCATC	2 cut(s)	369, 379
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	2 cut(s)	359, 366
SmlI	CTYRAG	4 cut(s)	31, 163, 254, 415
SmoI	CTYRAG	4 cut(s)	31, 163, 254, 415
Sse9I	AATT	2 cut(s)	139, 426
SspI	AATATT	1 cut(s)	134
SspMI	CTAG	2 cut(s)	51, 393
StyI	CCWWGG	2 cut(s)	354, 362
TaaI	ACNGT	2 cut(s)	102, 208
TasI	AATT	2 cut(s)	139, 426
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	5 cut(s)	248, 284, 374, 416, 452
Tru9I	TTAA	5 cut(s)	248, 284, 374, 416, 452
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	3 cut(s)	78, 95, 126
TspGWI	ACGGA	1 cut(s)	335
Van91I	CCANNNNNTGG	2 cut(s)	152, 306
Vha464I	CTTAAG	1 cut(s)	415
VpaK11BI	GGWCC	2 cut(s)	359, 366
XapI	RAATTY	1 cut(s)	426
XspI	CTAG	2 cut(s)	51, 393
Zsp2I	ATGCAT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.