Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005863

Physical Location & Seq

Genomic Coordinates Forward (+)

69748974 .. 69754694

Gene Structure 5721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG477900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAAGGCGGCAGCAGCGTCAGCAACCTTGAACCATCCCATTCGTCTCTACCCATCACCCATTTGCCGCCAAATTGACTTCCCGGCTCGACGGTCTCAACCTCTCGCACACAACTCCGGCAAAGGGTTGAAATTGTACCGAAATGAGTCTGTGTGCTCCACTTCTAGTGTAATTTGTGCTGTCAATGGAGGTCAGGGAGGGTATGTCTCTGCGTGGGACGAGAAACCATATGAGTTACTTCCGAATGGGAAAAGGGCTTACTTAGATGAACAAGACGTGGTCACATTCCTTGATCCTCCTAAAGAGTTGATTCCTTTGGACTCGGCTTCTTATAATCCTGCTGCATATCTTTGGAAAAAAATTGATGATATTCCCCAGGAAAGGCGCCGTCGGCTGCTGCGCTTGCTAGAGCCTAGGAAATTGATGGATGGGAATTCAGGATCGTTGATGTCTGGAAAATGGTTATGCAGGCTGATCTCAAGAGCTTGGGAGATAGCTGGCACACGATATGAAGAACCCAAGTTGATGAACAGAAGCTCATCTCAACTGTTGTCTAATGAAGATGGTGTCTCTCTTGAATATTATAATTGCCGAACAAGTGGAGGACCAATGCTCATTTCTTGGATAAACTTTTTCAAAACGGCAATTTTTTCTTGCAAGGATGGGAACGTATATGGACGATTTATTGGTGAAACAATTCTTAATGGACTTGCAAATTCCTTTAGTCCACTGTACTTTGTAGTGAGCCAGCTGAAGGAAGTAATGGCAACTGAACAACCTTGTGATCTAGCATATGAGTTCGGGGATGGGCTGTTTGATCTCCATGAATACCCCGAGGGCTTTCCAAGACCAGTGAAACATCCGTATCCTTTCAACGATCAGGTGGTTGTCTATGTTCGTCATCTAGGACCAGGCGTGTCAGTAGGGCAAGCGTGGCAAGAAGGAAAAGCATTACAACAAGTACCACAAAAATTATGTGGTGACATTCTAATGGTGAAAGATTATTCTACTCTTAGAGAAGATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

342

Amino Acids

38.5

Weight (kDa)

7.53

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73090 AT1G73090
fragaria_vesca	FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290 FvH4_6g37290
malus_domestica	MD09G1158700.v1.1
prunus_persica	Prupe.3G167100_v2.0.a1 Prupe.3G167100_v2.0.a1
pyrus_communis	pycom09g07730
rosa_chinensis	RchiOBHm_Chr1g0381181 RchiOBHm_Chr2g0150121
rosa_laevigata	RLG00000020468
rosa_multiflora	Rmu_sc0000156.1_g000009 Rmu_sc0009445.1_g000003
rosa_roxburghii	Rroxscaffold_2G00097430
rosa_rugosa	Rorug02G0419300
rosa_samantha	Rh1AG306600 Rh1CG035500 Rh2AG477900 Rh2BG490500 Rh2CG464100 Rh2DG499300 Rh4AG247100 Rh5DG267800
rosa_wichuraiana	Rw2G039010 Rw5G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	333, 585
AccB1I	GGYRCC	1 cut(s)	384
AciI	CCGC	2 cut(s)	8, 67
AclWI	GGATC	2 cut(s)	287, 448
AcsI	RAATTY	2 cut(s)	433, 715
AcuI	CTGAAG	1 cut(s)	773
AcyI	GRCGYC	1 cut(s)	385
AfaI	GTAC	3 cut(s)	137, 734, 963
AfiI	CCNNNNNNNGG	3 cut(s)	123, 381, 754
AgsI	TTSAA	5 cut(s)	31, 130, 578, 637, 874
AjiI	CACGTC	1 cut(s)	277
AjnI	CCWGG	2 cut(s)	375, 910
AjuI	GAANNNNNNNTTGG	2 cut(s)	601, 633
AluBI	AGCT	4 cut(s)	485, 497, 537, 751
AluI	AGCT	4 cut(s)	485, 497, 537, 751
Alw21I	GWGCWC	1 cut(s)	158
Alw26I	GTCTC	4 cut(s)	50, 99, 211, 574
AlwI	GGATC	2 cut(s)	287, 448
Ama87I	CYCGRG	1 cut(s)	833
ApeKI	GCWGC	5 cut(s)	11, 14, 341, 394, 397
ApoI	RAATTY	2 cut(s)	433, 715
Asp700I	GAANNNNTTC	1 cut(s)	696
AspA2I	CCTAGG	1 cut(s)	413
AspLEI	GCGC	2 cut(s)	387, 402
AspS9I	GGNCC	2 cut(s)	605, 908
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	4 cut(s)	48, 701, 992, 1006
AvaI	CYCGRG	1 cut(s)	833
AvaII	GGWCC	2 cut(s)	605, 908
AvrII	CCTAGG	1 cut(s)	413
BaeI	ACNNNNGTAYC	2 cut(s)	848, 881
BanI	GGYRCC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	158
BbvI	GCAGC	5 cut(s)	23, 26, 328, 381, 384
BccI	CCATC	7 cut(s)	42, 61, 418, 422, 557, 656, 800
BceAI	ACGGC	2 cut(s)	372, 657
BciT130I	CCWGG	2 cut(s)	377, 912
BciVI	GTATCC	1 cut(s)	876
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	4 cut(s)	50, 99, 211, 574
BfaI	CTAG	5 cut(s)	165, 407, 414, 788, 905
BfoI	RGCGCY	1 cut(s)	388
BfuI	GTATCC	1 cut(s)	876
BisI	GCNGC	7 cut(s)	9, 12, 15, 67, 342, 395, 398
BlnI	CCTAGG	1 cut(s)	413
BlsI	GCNGC	7 cut(s)	10, 13, 16, 68, 343, 396, 399
Bme1390I	CCNGG	3 cut(s)	83, 377, 912
Bme18I	GGWCC	2 cut(s)	605, 908
BmeT110I	CYCGRG	1 cut(s)	833
BmgBI	CACGTC	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	605, 908
BmiI	GGNNCC	1 cut(s)	386
BmrFI	CCNGG	3 cut(s)	83, 377, 912
BpuEI	CTTGAG	1 cut(s)	463
BpuMI	CCSGG	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	385
BsaI	GGTCTC	1 cut(s)	99
BsaJI	CCNNGG	3 cut(s)	375, 413, 834
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 381, 754
Bse1I	ACTGG	1 cut(s)	851
BseBI	CCWGG	2 cut(s)	377, 912
BseDI	CCNNGG	3 cut(s)	375, 413, 834
BseGI	GGATG	5 cut(s)	34, 433, 667, 811, 859
BseLI	CCNNNNNNNGG	3 cut(s)	123, 381, 754
BseNI	ACTGG	1 cut(s)	851
BseXI	GCAGC	5 cut(s)	23, 26, 328, 381, 384
BshNI	GGYRCC	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	833
BsiSI	CCGG	2 cut(s)	83, 117
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	3 cut(s)	123, 381, 754
BsmAI	GTCTC	4 cut(s)	50, 99, 211, 574
BsmBI	CGTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	230
Bso31I	GGTCTC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	833
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	7 cut(s)	292, 440, 474, 784, 817, 877, 1021
BspACI	CCGC	2 cut(s)	8, 67
BspLI	GGNNCC	1 cut(s)	386
BspPI	GGATC	2 cut(s)	287, 448
BspT107I	GGYRCC	1 cut(s)	384
BspTNI	GGTCTC	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	851
BssECI	CCNNGG	3 cut(s)	375, 413, 834
BssMI	GATC	7 cut(s)	292, 440, 474, 784, 817, 877, 1021
BssNI	GRCGYC	1 cut(s)	385
BssT1I	CCWWGG	1 cut(s)	413
Bst2UI	CCWGG	2 cut(s)	377, 912
Bst4CI	ACNGT	3 cut(s)	93, 549, 732
BstACI	GRCGYC	1 cut(s)	385
BstC8I	GCNNGC	5 cut(s)	404, 470, 499, 749, 930
BstDEI	CTNAG	2 cut(s)	262, 1013
BstF5I	GGATG	5 cut(s)	34, 433, 667, 811, 859
BstH2I	RGCGCY	1 cut(s)	388
BstHHI	GCGC	2 cut(s)	387, 402
BstKTI	GATC	7 cut(s)	295, 443, 477, 787, 820, 880, 1024
BstMAI	GTCTC	4 cut(s)	50, 99, 211, 574
BstMBI	GATC	7 cut(s)	292, 440, 474, 784, 817, 877, 1021
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 20, 391, 403, 934
BstNI	CCWGG	2 cut(s)	377, 912
BstSCI	CCNGG	3 cut(s)	81, 375, 910
BstV1I	GCAGC	5 cut(s)	23, 26, 328, 381, 384
BsuI	GTATCC	1 cut(s)	876
BtrI	CACGTC	1 cut(s)	277
BtsCI	GGATG	5 cut(s)	34, 433, 667, 811, 859
BtsIMutI	CAGTG	2 cut(s)	728, 858
Cac8I	GCNNGC	5 cut(s)	404, 470, 499, 749, 930
CfoI	GCGC	2 cut(s)	387, 402
Cfr13I	GGNCC	2 cut(s)	605, 908
CseI	GACGC	1 cut(s)	6
Csp6I	GTAC	3 cut(s)	136, 733, 962
CviAII	CATG	1 cut(s)	824
CviQI	GTAC	3 cut(s)	136, 733, 962
DdeI	CTNAG	2 cut(s)	262, 1013
DinI	GGCGCC	1 cut(s)	386
DpnI	GATC	7 cut(s)	294, 442, 476, 786, 819, 879, 1023
DpnII	GATC	7 cut(s)	292, 440, 474, 784, 817, 877, 1021
Eco130I	CCWWGG	1 cut(s)	413
Eco31I	GGTCTC	1 cut(s)	99
Eco47I	GGWCC	2 cut(s)	605, 908
Eco57I	CTGAAG	1 cut(s)	773
Eco88I	CYCGRG	1 cut(s)	833
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	375, 910
EcoT14I	CCWWGG	1 cut(s)	413
EgeI	GGCGCC	1 cut(s)	386
EheI	GGCGCC	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	413
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	1 cut(s)	827
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	1 cut(s)	823
FauNDI	CATATG	2 cut(s)	229, 793
Fnu4HI	GCNGC	7 cut(s)	9, 12, 15, 67, 342, 395, 398
FokI	GGATG	5 cut(s)	21, 440, 674, 818, 846
Fsp4HI	GCNGC	7 cut(s)	9, 12, 15, 67, 342, 395, 398
FspBI	CTAG	5 cut(s)	165, 407, 414, 788, 905
GlaI	GCGC	2 cut(s)	386, 401
GluI	GCNGC	7 cut(s)	9, 12, 15, 67, 342, 395, 398
HaeII	RGCGCY	1 cut(s)	388
HapII	CCGG	2 cut(s)	83, 117
HgaI	GACGC	1 cut(s)	6
HhaI	GCGC	2 cut(s)	387, 402
Hin1I	GRCGYC	1 cut(s)	385
Hin1II	CATG	1 cut(s)	827
Hin6I	GCGC	2 cut(s)	385, 400
HinP1I	GCGC	2 cut(s)	385, 400
HinfI	GANTC	3 cut(s)	146, 310, 320
HpaII	CCGG	2 cut(s)	83, 117
HphI	GGTGA	4 cut(s)	48, 701, 992, 1006
Hpy166II	GTNNAC	1 cut(s)	728
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	4 cut(s)	438, 453, 480, 575
Hpy8I	GTNNAC	1 cut(s)	728
Hpy99I	CGWCG	2 cut(s)	93, 393
HpyAV	CCTTC	2 cut(s)	748, 935
HpyCH4III	ACNGT	3 cut(s)	93, 549, 732
HpyCH4IV	ACGT	2 cut(s)	276, 669
HpyCH4V	TGCA	4 cut(s)	344, 468, 657, 713
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 20, 391, 403, 934
HpyF3I	CTNAG	2 cut(s)	262, 1013
HpySE526I	ACGT	2 cut(s)	276, 669
Hsp92I	GRCGYC	1 cut(s)	385
Hsp92II	CATG	1 cut(s)	827
HspAI	GCGC	2 cut(s)	385, 400
KasI	GGCGCC	1 cut(s)	384
Kzo9I	GATC	7 cut(s)	292, 440, 474, 784, 817, 877, 1021
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	5 cut(s)	23, 26, 328, 381, 384
MaeI	CTAG	5 cut(s)	165, 407, 414, 788, 905
MaeII	ACGT	2 cut(s)	276, 669
MaeIII	GTNAC	3 cut(s)	234, 280, 980
MalI	GATC	7 cut(s)	294, 442, 476, 786, 819, 879, 1023
MboI	GATC	7 cut(s)	292, 440, 474, 784, 817, 877, 1021
MboII	GAAGA	2 cut(s)	524, 572
MhlI	GDGCHC	1 cut(s)	158
Mly113I	GGCGCC	1 cut(s)	385
MlyI	GAGTC	2 cut(s)	155, 314
MnlI	CCTC	6 cut(s)	111, 182, 191, 306, 596, 829
MroXI	GAANNNNTTC	1 cut(s)	696
MseI	TTAA	1 cut(s)	702
MslI	CAYNNNNRTG	1 cut(s)	989
MspA1I	CMGCKG	1 cut(s)	751
MspI	CCGG	2 cut(s)	83, 117
MspR9I	CCNGG	3 cut(s)	83, 377, 912
MvaI	CCWGG	2 cut(s)	377, 912
MwoI	GCNNNNNNNGC	5 cut(s)	14, 20, 391, 403, 934
NarI	GGCGCC	1 cut(s)	385
NciI	CCSGG	1 cut(s)	83
NdeI	CATATG	2 cut(s)	229, 793
NdeII	GATC	7 cut(s)	292, 440, 474, 784, 817, 877, 1021
NlaIII	CATG	1 cut(s)	827
NlaIV	GGNNCC	1 cut(s)	386
NmeAIII	GCCGAG	1 cut(s)	302
NmuCI	GTSAC	2 cut(s)	280, 980
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	1 cut(s)	310
PflFI	GACNNNGTC	1 cut(s)	278
PkrI	GCNGC	7 cut(s)	10, 13, 16, 68, 343, 396, 399
PleI	GAGTC	2 cut(s)	154, 314
PluTI	GGCGCC	1 cut(s)	388
PpsI	GAGTC	2 cut(s)	154, 314
PsiI	TTATAA	2 cut(s)	333, 585
Psp6I	CCWGG	2 cut(s)	375, 910
PspGI	CCWGG	2 cut(s)	375, 910
PspN4I	GGNNCC	1 cut(s)	386
PspPI	GGNCC	2 cut(s)	605, 908
PsyI	GACNNNGTC	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	751
RsaI	GTAC	3 cut(s)	137, 734, 963
RsaNI	GTAC	3 cut(s)	136, 733, 962
RseI	CAYNNNNRTG	1 cut(s)	989
SaqAI	TTAA	1 cut(s)	702
SatI	GCNGC	7 cut(s)	9, 12, 15, 67, 342, 395, 398
Sau3AI	GATC	7 cut(s)	292, 440, 474, 784, 817, 877, 1021
Sau96I	GGNCC	2 cut(s)	605, 908
SchI	GAGTC	2 cut(s)	155, 314
ScrFI	CCNGG	3 cut(s)	83, 377, 912
SduI	GDGCHC	1 cut(s)	158
SfoI	GGCGCC	1 cut(s)	386
SinI	GGWCC	2 cut(s)	605, 908
SmiMI	CAYNNNNRTG	1 cut(s)	989
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
SsiI	CCGC	2 cut(s)	8, 67
SspDI	GGCGCC	1 cut(s)	384
SspI	AATATT	1 cut(s)	581
SspMI	CTAG	5 cut(s)	165, 407, 414, 788, 905
StyD4I	CCNGG	3 cut(s)	81, 375, 910
StyI	CCWWGG	1 cut(s)	413
TaaI	ACNGT	3 cut(s)	93, 549, 732
TaiI	ACGT	2 cut(s)	279, 672
TaqI	TCGA	1 cut(s)	88
TatI	WGTACW	1 cut(s)	732
TauI	GCSGC	2 cut(s)	11, 69
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	1 cut(s)	702
Tru9I	TTAA	1 cut(s)	702
TscAI	CASTG	2 cut(s)	735, 858
TseFI	GTSAC	2 cut(s)	280, 980
TseI	GCWGC	5 cut(s)	11, 14, 341, 394, 397
Tsp45I	GTSAC	2 cut(s)	280, 980
TspDTI	ATGAA	6 cut(s)	17, 282, 525, 542, 573, 840
TspGWI	ACGGA	1 cut(s)	852
TspRI	CASTG	2 cut(s)	735, 858
Tth111I	GACNNNGTC	1 cut(s)	278
VpaK11BI	GGWCC	2 cut(s)	605, 908
XapI	RAATTY	2 cut(s)	433, 715
XmaJI	CCTAGG	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	696
XspI	CTAG	5 cut(s)	165, 407, 414, 788, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.